Rh4CG380100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000788
Physical Location & Seq
Reverse (-)
63363381 .. 63365717
2337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG380100.1

Sequence Viewer

Length: 324 bp
ATGGCCATAGGACGGGAAATTAGCCAACGCGCCATCACCAATGGTTTGCTGACTTCAACAGCTGCCGATCGTGTTCTGCAAACGGGTTCCACCTTTCTTTACTCTGAATCTTGTTCTAGCTGTGGAGACTTTGAATCAGTTCCTTGGTTGGTGCAAGCTCTCATTATTTTTCGTAAGAATCAAGCAAGAGACAAGTTCATTCCAATTCCTATTCCTCTCATTGATCTCCATCATCAGGCATTCCTACAAGTAAATCTGGGTTATCATCATCAATTGTATCCTAATTTCTTTTGCTTCTGTTTTTCTCAGATGCAGCAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.21

Weight (kDa)

6.39

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 30
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 2 cut(s) 12, 235
AgsI TTSAA 2 cut(s) 57, 134
AluBI AGCT 3 cut(s) 62, 120, 158
AluI AGCT 3 cut(s) 62, 120, 158
Alw26I GTCTC 2 cut(s) 120, 183
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 62, 313
Asp700I GAANNNNTTC 1 cut(s) 138
AspLEI GCGC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 28
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 49
BccI CCATC 2 cut(s) 41, 237
BciVI GTATCC 1 cut(s) 288
BcoDI GTCTC 2 cut(s) 120, 183
BfaI CTAG 1 cut(s) 117
BfuI GTATCC 1 cut(s) 288
BisI GCNGC 2 cut(s) 63, 314
BlsI GCNGC 2 cut(s) 64, 315
BmiI GGNNCC 1 cut(s) 88
BmsI GCATC 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 143
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 235
Bse8I GATNNNNATC 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 143
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 12, 235
BseMII CTCAG 1 cut(s) 320
BseXI GCAGC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 70
BslI CCNNNNNNNGG 2 cut(s) 12, 235
BsmAI GTCTC 2 cut(s) 120, 183
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 67, 223
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 319
BspFNI CGCG 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 143
BssMI GATC 2 cut(s) 67, 223
BssT1I CCWWGG 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 306
BstFNI CGCG 1 cut(s) 30
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 2 cut(s) 70, 226
BstMAI GTCTC 2 cut(s) 120, 183
BstMBI GATC 2 cut(s) 67, 223
BstMCI CGRYCG 1 cut(s) 70
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 49
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 156
CfoI GCGC 1 cut(s) 32
CviJI RGCY 5 cut(s) 5, 24, 62, 120, 158
CviKI_1 RGCY 5 cut(s) 5, 24, 62, 120, 158
DdeI CTNAG 1 cut(s) 306
DpnI GATC 2 cut(s) 69, 225
DpnII GATC 2 cut(s) 67, 223
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 143
FaiI YATR 1 cut(s) 8
Fnu4HI GCNGC 2 cut(s) 63, 314
Fsp4HI GCNGC 2 cut(s) 63, 314
FspBI CTAG 1 cut(s) 117
GlaI GCGC 1 cut(s) 31
GluI GCNGC 2 cut(s) 63, 314
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 32
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HinfI GANTC 3 cut(s) 107, 134, 178
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 106, 309
HpyCH4V TGCA 3 cut(s) 79, 154, 313
HpyF3I CTNAG 1 cut(s) 306
HspAI GCGC 1 cut(s) 30
Kzo9I GATC 2 cut(s) 67, 223
LpnPI CCDG 2 cut(s) 221, 242
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 300
MaeI CTAG 1 cut(s) 117
MalI GATC 2 cut(s) 69, 225
MboI GATC 2 cut(s) 67, 223
MfeI CAATTG 1 cut(s) 272
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 18, 204, 272, 283
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 1 cut(s) 225
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 138
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 62
MunI CAATTG 1 cut(s) 272
Mva1269I GAATGC 1 cut(s) 239
MvnI CGCG 1 cut(s) 30
NdeII GATC 2 cut(s) 67, 223
NlaIV GGNNCC 1 cut(s) 88
PctI GAATGC 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 3 cut(s) 107, 134, 178
PkrI GCNGC 2 cut(s) 64, 315
Ple19I CGATCG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 88
PvuI CGATCG 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 62
SatI GCNGC 2 cut(s) 63, 314
Sau3AI GATC 2 cut(s) 67, 223
SetI ASST 4 cut(s) 64, 95, 122, 160
SfaNI GCATC 1 cut(s) 300
Sse9I AATT 4 cut(s) 18, 204, 272, 283
SspMI CTAG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 143
TasI AATT 4 cut(s) 18, 204, 272, 283
TfiI GAWTC 3 cut(s) 107, 134, 178
TseI GCWGC 2 cut(s) 62, 313
TspDTI ATGAA 1 cut(s) 187
XmnI GAANNNNTTC 1 cut(s) 138
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.