Rorug07G0063800

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000788
Physical Location & Seq
Reverse (-)
4829254 .. 4829919
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0063800.1

Sequence Viewer

Length: 666 bp
ATGAATGGGTCTCCTATGGAGGTGCCTGTTGCTTTGGGGATGGTGGTGGCTGAATTGAGCGAAGAGCCGTGGAAAGGGAAGGTGATCACTTTCAGTAGCAATCCTCAGCTGCATGTGATACAAGGCAAGAGTCTCAAGGCCAAGAGCGAGTTTGTGAGGAAAATGGATTGGGGAGCCACCACTGATTTTCAGAAGGTGTTTGATTTGATACTAGAAGTGGCTGTGAAGGGGAAGCTGAAGCCAGAGCAGATGATAAAGAAGGTGTTTGTGTTCAGCGACATGGAGTTTGATCAGGCTTCGCTGCATAGCAGATATGGATTTGGGTATGGAAGGGGGGTTAGGGGGCGCGGGAGAAGTGGATTTGGGAATTATCGAAGGGAGAATATTGAAACTCAAAAGGGATGGGAGACTGATTATGAGGTGATACAATGGAAGTTTAGGGAGAGAGGGTATGGGGATGTGGTGCCACAGATAGTATTTTGGAATTTGAGGCACTCCAAATCAACACCGGTGACCGAGTCACAAAATGGGGTGGCGCTGCTCAGTGGCTTCTCCAAGAATTTGCTCAAGTTATTCTTGGGTAAGGATGTGGTGACTCGCCCGGACCAAACCATGGAAGAGGCCATCTCTGGCAAAGAGTATCAGAATTTAGTTGTAGTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

221

Amino Acids

25.09

Weight (kDa)

9.13

Isoelectric Point (pI)

27.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7788 PF25043 3 - 211 1.5e-71 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 22, 463
AccB7I CCANNNNNTGG 1 cut(s) 613
AccII CGCG 1 cut(s) 348
AciI CCGC 1 cut(s) 348
AcsI RAATTY 3 cut(s) 484, 559, 646
AcuI CTGAAG 1 cut(s) 257
AfiI CCNNNNNNNGG 2 cut(s) 74, 613
AgeI ACCGGT 1 cut(s) 508
AgsI TTSAA 1 cut(s) 389
AluBI AGCT 2 cut(s) 109, 235
AluI AGCT 2 cut(s) 109, 235
Alw26I GTCTC 3 cut(s) 15, 137, 401
AoxI GGCC 2 cut(s) 138, 621
ApeKI GCWGC 3 cut(s) 109, 301, 538
ApoI RAATTY 3 cut(s) 484, 559, 646
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AsiGI ACCGGT 1 cut(s) 508
AspLEI GCGC 2 cut(s) 348, 538
AspS9I GGNCC 1 cut(s) 604
AsuC2I CCSGG 1 cut(s) 602
AsuHPI GGTGA 4 cut(s) 94, 433, 523, 604
AvaII GGWCC 1 cut(s) 604
BanI GGYRCC 2 cut(s) 22, 463
BbvCI CCTCAGC 1 cut(s) 105
BbvI GCAGC 3 cut(s) 96, 288, 525
BccI CCATC 3 cut(s) 34, 396, 632
BceAI ACGGC 1 cut(s) 52
BclI TGATCA 2 cut(s) 84, 289
BcnI CCSGG 1 cut(s) 602
BcoDI GTCTC 3 cut(s) 15, 137, 401
BfaI CTAG 1 cut(s) 212
BfoI RGCGCY 1 cut(s) 539
BisI GCNGC 3 cut(s) 110, 302, 539
BlsI GCNGC 3 cut(s) 111, 303, 540
Bme1390I CCNGG 1 cut(s) 602
Bme18I GGWCC 1 cut(s) 604
BmgT120I GGNCC 1 cut(s) 604
BmiI GGNNCC 3 cut(s) 24, 175, 465
BmrFI CCNGG 1 cut(s) 602
BplI GAGNNNNNCTC 2 cut(s) 611, 643
Bpu10I CCTNAGC 1 cut(s) 105
BpuEI CTTGAG 2 cut(s) 119, 551
BpuMI CCSGG 1 cut(s) 602
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 68, 612
BsaWI WCCGGW 1 cut(s) 508
BsaXI ACNNNNNCTCC 2 cut(s) 434, 464
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 613
Bse118I RCCGGY 1 cut(s) 508
BseDI CCNNGG 2 cut(s) 68, 612
BseGI GGATG 4 cut(s) 45, 407, 463, 592
BseLI CCNNNNNNNGG 2 cut(s) 74, 613
BseMII CTCAG 2 cut(s) 119, 556
BseXI GCAGC 3 cut(s) 96, 288, 525
Bsh1236I CGCG 1 cut(s) 348
BshFI GGCC 2 cut(s) 140, 623
BshNI GGYRCC 2 cut(s) 22, 463
BshTI ACCGGT 1 cut(s) 508
BsiSI CCGG 2 cut(s) 509, 602
BslI CCNNNNNNNGG 2 cut(s) 74, 613
BsmAI GTCTC 3 cut(s) 15, 137, 401
BsnI GGCC 2 cut(s) 140, 623
Bso31I GGTCTC 1 cut(s) 15
Bsp143I GATC 2 cut(s) 84, 289
Bsp19I CCATGG 1 cut(s) 612
BspACI CCGC 1 cut(s) 348
BspANI GGCC 2 cut(s) 140, 623
BspCNI CTCAG 2 cut(s) 118, 555
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 3 cut(s) 24, 175, 465
BspQI GCTCTTC 1 cut(s) 57
BspT107I GGYRCC 2 cut(s) 22, 463
BspTNI GGTCTC 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 508
BssAI RCCGGY 1 cut(s) 508
BssECI CCNNGG 2 cut(s) 68, 612
BssMI GATC 2 cut(s) 84, 289
BssT1I CCWWGG 1 cut(s) 612
Bst6I CTCTTC 2 cut(s) 57, 612
BstDEI CTNAG 2 cut(s) 105, 542
BstDSI CCRYGG 2 cut(s) 68, 612
BstEII GGTNACC 1 cut(s) 511
BstF5I GGATG 4 cut(s) 45, 407, 463, 592
BstFNI CGCG 1 cut(s) 348
BstH2I RGCGCY 1 cut(s) 539
BstHHI GCGC 2 cut(s) 348, 538
BstKTI GATC 2 cut(s) 87, 292
BstMAI GTCTC 3 cut(s) 15, 137, 401
BstMBI GATC 2 cut(s) 84, 289
BstNSI RCATGY 1 cut(s) 116
BstPI GGTNACC 1 cut(s) 511
BstSCI CCNGG 1 cut(s) 600
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 3 cut(s) 96, 288, 525
BsuRI GGCC 2 cut(s) 140, 623
BtgI CCRYGG 2 cut(s) 68, 612
BtsCI GGATG 4 cut(s) 45, 407, 463, 592
BtsIMutI CAGTG 2 cut(s) 180, 550
CfoI GCGC 2 cut(s) 348, 538
Cfr10I RCCGGY 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 604
CspAI ACCGGT 1 cut(s) 508
CviAII CATG 3 cut(s) 113, 280, 613
DdeI CTNAG 2 cut(s) 105, 542
DpnI GATC 2 cut(s) 86, 291
DpnII GATC 2 cut(s) 84, 289
Eam1104I CTCTTC 2 cut(s) 57, 612
EarI CTCTTC 2 cut(s) 57, 612
Eco130I CCWWGG 1 cut(s) 612
Eco31I GGTCTC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 604
Eco57I CTGAAG 1 cut(s) 257
Eco91I GGTNACC 1 cut(s) 511
EcoO65I GGTNACC 1 cut(s) 511
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
FaeI CATG 3 cut(s) 116, 283, 616
FaiI YATR 9 cut(s) 17, 114, 281, 306, 315, 327, 417, 453, 614
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FatI CATG 3 cut(s) 112, 279, 612
FauI CCCGC 1 cut(s) 341
FbaI TGATCA 2 cut(s) 84, 289
Fnu4HI GCNGC 3 cut(s) 110, 302, 539
FokI GGATG 4 cut(s) 52, 414, 470, 599
Fsp4HI GCNGC 3 cut(s) 110, 302, 539
FspBI CTAG 1 cut(s) 212
GlaI GCGC 2 cut(s) 347, 537
GluI GCNGC 3 cut(s) 110, 302, 539
HaeII RGCGCY 1 cut(s) 539
HaeIII GGCC 2 cut(s) 140, 623
HapII CCGG 2 cut(s) 509, 602
HhaI GCGC 2 cut(s) 348, 538
Hin1II CATG 3 cut(s) 116, 283, 616
Hin6I GCGC 2 cut(s) 346, 536
HinP1I GCGC 2 cut(s) 346, 536
HinfI GANTC 3 cut(s) 130, 518, 595
HpaII CCGG 2 cut(s) 509, 602
HphI GGTGA 4 cut(s) 94, 433, 523, 604
Hpy188I TCNGA 2 cut(s) 192, 645
HpyAV CCTTC 6 cut(s) 73, 187, 220, 253, 324, 369
HpyCH4V TGCA 2 cut(s) 112, 304
HpyF3I CTNAG 2 cut(s) 105, 542
Hsp92II CATG 3 cut(s) 116, 283, 616
HspAI GCGC 2 cut(s) 346, 536
Ksp22I TGATCA 2 cut(s) 84, 289
Kzo9I GATC 2 cut(s) 84, 289
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 6 cut(s) 39, 255, 278, 522, 615, 615
Lsp1109I GCAGC 3 cut(s) 96, 288, 525
MaeI CTAG 1 cut(s) 212
MaeIII GTNAC 3 cut(s) 511, 519, 592
MalI GATC 2 cut(s) 86, 291
MboI GATC 2 cut(s) 84, 289
MboII GAAGA 2 cut(s) 74, 629
MluCI AATT 5 cut(s) 53, 367, 484, 559, 646
MlyI GAGTC 3 cut(s) 139, 527, 589
MnlI CCTC 7 cut(s) 13, 114, 150, 412, 440, 483, 613
MspA1I CMGCKG 1 cut(s) 109
MspI CCGG 2 cut(s) 509, 602
MspR9I CCNGG 1 cut(s) 602
MvnI CGCG 1 cut(s) 348
NciI CCSGG 1 cut(s) 602
NcoI CCATGG 1 cut(s) 612
NdeII GATC 2 cut(s) 84, 289
NlaIII CATG 3 cut(s) 116, 283, 616
NlaIV GGNNCC 3 cut(s) 24, 175, 465
NmuCI GTSAC 3 cut(s) 511, 519, 592
NspI RCATGY 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 57
PflFI GACNNNGTC 1 cut(s) 517
PflMI CCANNNNNTGG 1 cut(s) 613
PinAI ACCGGT 1 cut(s) 508
PkrI GCNGC 3 cut(s) 111, 303, 540
PleI GAGTC 3 cut(s) 138, 526, 589
PpsI GAGTC 3 cut(s) 138, 526, 589
PspEI GGTNACC 1 cut(s) 511
PspN4I GGNNCC 3 cut(s) 24, 175, 465
PspPI GGNCC 1 cut(s) 604
PsyI GACNNNGTC 1 cut(s) 517
PvuII CAGCTG 1 cut(s) 109
SapI GCTCTTC 1 cut(s) 57
SatI GCNGC 3 cut(s) 110, 302, 539
Sau3AI GATC 2 cut(s) 84, 289
Sau96I GGNCC 1 cut(s) 604
SchI GAGTC 3 cut(s) 139, 527, 589
ScrFI CCNGG 1 cut(s) 602
SetI ASST 7 cut(s) 24, 84, 111, 198, 237, 264, 423
SgrAI CRCCGGYG 1 cut(s) 508
SinI GGWCC 1 cut(s) 604
SmlI CTYRAG 2 cut(s) 134, 566
SmoI CTYRAG 2 cut(s) 134, 566
Sse9I AATT 5 cut(s) 53, 367, 484, 559, 646
SsiI CCGC 1 cut(s) 348
SspI AATATT 1 cut(s) 385
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 600
StyI CCWWGG 1 cut(s) 612
TaqI TCGA 1 cut(s) 373
TaqII GACCGA 1 cut(s) 530
TasI AATT 5 cut(s) 53, 367, 484, 559, 646
TscAI CASTG 2 cut(s) 187, 550
TseFI GTSAC 3 cut(s) 511, 519, 592
TseI GCWGC 3 cut(s) 109, 301, 538
Tsp45I GTSAC 3 cut(s) 511, 519, 592
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 187, 550
Tth111I GACNNNGTC 1 cut(s) 517
Van91I CCANNNNNTGG 1 cut(s) 613
VpaK11BI GGWCC 1 cut(s) 604
XapI RAATTY 3 cut(s) 484, 559, 646
XceI RCATGY 1 cut(s) 116
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.