Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Forward (+)

47993364 .. 47994237

Gene Structure 874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G032800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGATGAAAGCGGAGGCGGCGCCACTGGCGAGCGTGGAGGCTTCGGCAGCGGAATCGGAGGCTTCAAGGTCTTTGTCGTCGGCGACAGCAAAAGCCATGTCGGACTCGGCGTCAAGTGCAGCAAGGAGGTTGCTACTGCTATTCGTGGAGCCATTATTGTGGCTAAGCTGTGGGTGATTCCTGTGAGGAGGGGTTACAAGATCGGAAAGCCCCACACCAAGCATTGCAAGGTCACCGGAAAGTGTGGCTCTGTTATAGTGGGGATGGTGCTTGCTCCTCGTGGTTCTAGTATTGTGGTGGCTAGGGTTCCCAAGAAGGTGTTCCAATTTGTTGGTATTGATGATGTGTTCACTTCATCTAGGGGGTCTACCAAGACTCTCGAAACTTTGTCAAGGTTGCTTCAACAAGAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

138

Amino Acids

14.44

Weight (kDa)

10.14

Isoelectric Point (pI)

15.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	24 - 63	1.3e-12	Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C	PF03719	80 - 127	7.7e-11	Ribosomal protein S5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	368
AciI	CCGC	3 cut(s)	12, 18, 51
AcyI	GRCGYC	2 cut(s)	21, 111
AgsI	TTSAA	2 cut(s)	67, 404
AhdI	GACNNNNNGTC	1 cut(s)	110
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
ApeKI	GCWGC	2 cut(s)	48, 120
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
Asp700I	GAANNNNTTC	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	187, 226
BanI	GGYRCC	1 cut(s)	20
BauI	CACGAG	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	60, 132
BccI	CCATC	1 cut(s)	259
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BfaI	CTAG	3 cut(s)	288, 303, 360
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	3 cut(s)	19, 49, 121
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	3 cut(s)	20, 50, 122
BmeRI	GACNNNNNGTC	1 cut(s)	110
BmiI	GGNNCC	3 cut(s)	22, 151, 309
Bpu1102I	GCTNAGC	1 cut(s)	165
BsaHI	GRCGYC	2 cut(s)	21, 111
BsaWI	WCCGGW	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	223
BseGI	GGATG	2 cut(s)	10, 270
BseMI	GCAATG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	2 cut(s)	202, 267
BseXI	GCAGC	2 cut(s)	60, 132
BsgI	GTGCAG	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	201
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	3 cut(s)	12, 18, 51
BspLI	GGNNCC	3 cut(s)	22, 151, 309
BspT107I	GGYRCC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	201
BssNI	GRCGYC	2 cut(s)	21, 111
BssSI	CACGAG	1 cut(s)	279
Bst2BI	CACGAG	1 cut(s)	279
BstACI	GRCGYC	2 cut(s)	21, 111
BstC8I	GCNNGC	2 cut(s)	32, 273
BstDEI	CTNAG	1 cut(s)	165
BstEII	GGTNACC	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	10, 270
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 27, 48, 117
BstPI	GGTNACC	1 cut(s)	232
BstV1I	GCAGC	2 cut(s)	60, 132
BstXI	CCANNNNNNTGG	2 cut(s)	160, 332
BtsCI	GGATG	2 cut(s)	10, 270
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	2 cut(s)	32, 273
CfoI	GCGC	1 cut(s)	23
CseI	GACGC	1 cut(s)	100
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	9 cut(s)	42, 63, 96, 152, 164, 169, 211, 249, 302
CviKI_1	RGCY	9 cut(s)	42, 63, 96, 152, 164, 169, 211, 249, 302
DdeI	CTNAG	1 cut(s)	165
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
DriI	GACNNNNNGTC	1 cut(s)	110
Eam1105I	GACNNNNNGTC	1 cut(s)	110
Eco91I	GGTNACC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	232
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
FaeI	CATG	1 cut(s)	101
FaiI	YATR	3 cut(s)	99, 257, 415
FatI	CATG	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	368
Fnu4HI	GCNGC	3 cut(s)	19, 49, 121
FokI	GGATG	2 cut(s)	17, 277
Fsp4HI	GCNGC	3 cut(s)	19, 49, 121
FspBI	CTAG	3 cut(s)	288, 303, 360
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	3 cut(s)	19, 49, 121
HaeII	RGCGCY	1 cut(s)	24
HapII	CCGG	1 cut(s)	237
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	2 cut(s)	21, 111
Hin1II	CATG	1 cut(s)	101
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HinfI	GANTC	4 cut(s)	54, 105, 178, 376
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	2 cut(s)	187, 226
Hpy166II	GTNNAC	2 cut(s)	351, 369
Hpy188I	TCNGA	3 cut(s)	59, 104, 206
Hpy188III	TCNNGA	1 cut(s)	380
Hpy8I	GTNNAC	2 cut(s)	351, 369
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	310
HpyCH4V	TGCA	2 cut(s)	120, 228
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 27, 48, 117
HpyF3I	CTNAG	1 cut(s)	165
Hsp92I	GRCGYC	2 cut(s)	21, 111
Hsp92II	CATG	1 cut(s)	101
HspAI	GCGC	1 cut(s)	21
KasI	GGCGCC	1 cut(s)	20
Kzo9I	GATC	1 cut(s)	201
LmnI	GCTCC	2 cut(s)	149, 280
LpnPI	CCDG	3 cut(s)	12, 195, 250
Lsp1109I	GCAGC	2 cut(s)	60, 132
MaeI	CTAG	3 cut(s)	288, 303, 360
MaeIII	GTNAC	2 cut(s)	194, 232
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MluCI	AATT	1 cut(s)	326
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	2 cut(s)	99, 370
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	7 cut(s)	8, 32, 53, 121, 180, 183, 288
MroXI	GAANNNNTTC	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	4 cut(s)	18, 27, 48, 117
NarI	GGCGCC	1 cut(s)	21
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	3 cut(s)	22, 151, 309
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	54, 178
PkrI	GCNGC	3 cut(s)	20, 50, 122
PleI	GAGTC	2 cut(s)	99, 370
PluTI	GGCGCC	1 cut(s)	24
PpsI	GAGTC	2 cut(s)	99, 370
PspEI	GGTNACC	1 cut(s)	232
PspN4I	GGNNCC	3 cut(s)	22, 151, 309
RseI	CAYNNNNRTG	1 cut(s)	158
SatI	GCNGC	3 cut(s)	19, 49, 121
Sau3AI	GATC	1 cut(s)	201
SchI	GAGTC	2 cut(s)	99, 370
SetI	ASST	6 cut(s)	72, 132, 171, 234, 321, 398
SfoI	GGCGCC	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse9I	AATT	1 cut(s)	326
SsiI	CCGC	3 cut(s)	12, 18, 51
SspDI	GGCGCC	1 cut(s)	20
SspMI	CTAG	3 cut(s)	288, 303, 360
TaqI	TCGA	1 cut(s)	381
TasI	AATT	1 cut(s)	326
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	2 cut(s)	54, 178
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	2 cut(s)	48, 120
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	21, 345
TspRI	CASTG	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	368
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	3 cut(s)	288, 303, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.