Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Forward (+)

45350953 .. 45356887

Gene Structure 5935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG279600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGATGTGTTCACTTCATCCAGGGGGTCTACCAAGACTCTCGAAACTTTGTCAAGGAATAATGATTGAGCTATTTAAAGTGAAGGAAAAGCAGAGGGAGCTTGCTGAAAATGCCAAAGGAAAGTCACTGGTTAAGAAGCAAAGTTCTGGAGAATTACAAAGGCAGAAGTGGAATAATGAGAGGCAGAATAAAGTTGAGAAAAAGAACTTGAAGTACGCAAAGGAGTTACTTGCAGAAAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

81

Amino Acids

9.4

Weight (kDa)

9.97

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	28
AfaI	GTAC	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	2 cut(s)	70, 100
AluI	AGCT	2 cut(s)	70, 100
BciT130I	CCWGG	1 cut(s)	21
Bme1390I	CCNGG	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	16
BseNI	ACTGG	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 110
BstNI	CCWGG	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	125
Cac8I	GCNNGC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	214
CviJI	RGCY	2 cut(s)	70, 100
CviKI_1	RGCY	2 cut(s)	70, 100
CviQI	GTAC	1 cut(s)	214
DraI	TTTAAA	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	28
FokI	GGATG	1 cut(s)	3
GsuI	CTGGAG	1 cut(s)	168
HinfI	GANTC	1 cut(s)	36
Hpy166II	GTNNAC	2 cut(s)	11, 29
Hpy188III	TCNNGA	2 cut(s)	40, 147
Hpy8I	GTNNAC	2 cut(s)	11, 29
HpyAV	CCTTC	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 110
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	4 cut(s)	6, 33, 113, 132
MaeIII	GTNAC	2 cut(s)	123, 225
MluCI	AATT	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	30
MnlI	CCTC	2 cut(s)	87, 174
MseI	TTAA	2 cut(s)	75, 132
MspR9I	CCNGG	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	97, 110
NmuCI	GTSAC	1 cut(s)	123
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
PsrI	GAACNNNNNNTAC	2 cut(s)	197, 229
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	2 cut(s)	75, 132
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	1 cut(s)	21
SetI	ASST	2 cut(s)	72, 102
Sse9I	AATT	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	19
TaqI	TCGA	1 cut(s)	41
TasI	AATT	1 cut(s)	152
Tru1I	TTAA	2 cut(s)	75, 132
Tru9I	TTAA	2 cut(s)	75, 132
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	123
TspDTI	ATGAA	1 cut(s)	5
TspRI	CASTG	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.