Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Forward (+)

48739953 .. 48748216

Gene Structure 8264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG351900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCAACTTCGAACACCCAACTCATTTGAACAACTTAGGTGTGCTGGCCGTCGTGACGAGGAGGAGAAATGTATCCCAGTGACCAAGCTTGGTCGTCACGTCAAGGACGGTAAGATCTCATCTTTGGGGAAGATTTATTTCCACTCGCTTCCAATCAAGGAGCACCAGATCATTGACACTCTCTGCGCTGGTCTGAAGGATGAGGTCATGAAGATCATGGCGGTTCAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

77

Amino Acids

8.81

Weight (kDa)

9.15

Isoelectric Point (pI)

30.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	46
AcuI	CTGAAG	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	29
AjiI	CACGTC	1 cut(s)	100
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw21I	GWGCWC	1 cut(s)	165
AoxI	GGCC	1 cut(s)	46
AspLEI	GCGC	1 cut(s)	188
AsuII	TTCGAA	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	165
BceAI	ACGGC	1 cut(s)	33
BciVI	GTATCC	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	83
BglII	AGATCT	1 cut(s)	114
BmgBI	CACGTC	1 cut(s)	100
BmrI	ACTGGG	1 cut(s)	71
BmuI	ACTGGG	1 cut(s)	71
Bpu14I	TTCGAA	1 cut(s)	10
Bse1I	ACTGG	1 cut(s)	77
BseGI	GGATG	1 cut(s)	205
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	2 cut(s)	74, 77
BshFI	GGCC	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	48
Bsp119I	TTCGAA	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	114, 168, 213
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	207
BspT104I	TTCGAA	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	77
BssMI	GATC	3 cut(s)	114, 168, 213
Bst4CI	ACNGT	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	3 cut(s)	117, 171, 216
BstMBI	GATC	3 cut(s)	114, 168, 213
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	48
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	46
CciI	TCATGA	1 cut(s)	207
CfoI	GCGC	1 cut(s)	188
CviAII	CATG	2 cut(s)	208, 217
CviJI	RGCY	2 cut(s)	48, 88
CviKI_1	RGCY	2 cut(s)	48, 88
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	3 cut(s)	116, 170, 215
DpnII	GATC	3 cut(s)	114, 168, 213
EaeI	YGGCCR	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	215
FaeI	CATG	2 cut(s)	211, 220
FaiI	YATR	2 cut(s)	209, 218
FatI	CATG	2 cut(s)	207, 216
FokI	GGATG	1 cut(s)	212
GlaI	GCGC	1 cut(s)	187
HaeIII	GGCC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	2 cut(s)	211, 220
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HindIII	AAGCTT	1 cut(s)	86
Hpy188I	TCNGA	2 cut(s)	195, 228
Hpy188III	TCNNGA	2 cut(s)	53, 208
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	211, 220
HspAI	GCGC	1 cut(s)	186
Kzo9I	GATC	3 cut(s)	114, 168, 213
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	4 cut(s)	30, 90, 174, 179
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	3 cut(s)	53, 79, 95
MalI	GATC	3 cut(s)	116, 170, 215
MboI	GATC	3 cut(s)	114, 168, 213
MboII	GAAGA	2 cut(s)	142, 223
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	165
MnlI	CCTC	3 cut(s)	52, 55, 196
NdeII	GATC	3 cut(s)	114, 168, 213
NlaIII	CATG	2 cut(s)	211, 220
NmuCI	GTSAC	3 cut(s)	53, 79, 95
NspV	TTCGAA	1 cut(s)	10
PagI	TCATGA	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	114
Sau3AI	GATC	3 cut(s)	114, 168, 213
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	4 cut(s)	41, 90, 102, 207
SfuI	TTCGAA	1 cut(s)	10
SsiI	CCGC	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	10
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	3 cut(s)	53, 79, 95
Tsp45I	GTSAC	3 cut(s)	53, 79, 95
TspDTI	ATGAA	1 cut(s)	224
TspRI	CASTG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.