Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000199.1

Orthogroup ID

OG0000788

Physical Location & Seq

Genomic Coordinates Forward (+)

93838 .. 95761

Gene Structure 1924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000199.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atggatgaaagaggaggcggcgccactggcgagcgtggaggctttggccacggaatcgaaggcttcaaggtctttgtcttcgtcggcgacagcaaaagccacgtcggactcggcgtcaagtgcaacaaagagcttgctactgctattcgtggagccattattgtggctaagctgtgggtgattcctgtgaggaggggttacaagatcggaaagccccacaccaagcattgcaaggtcaccggaaagtgtggctctgttatagtggggatggtgcttgctcctcgtggttctagtattgtggtggctagggttcccaagaaggtgttccaatttgttggtattgatgatgtgttcacttcatctagggggtctaccaagactctcgaaactttgtcaaggaattttaacttctgttttgtagtcgtgttggttgcttcaacaagaactatgactggtgacctttctaatccattgctggttaaacctcttcaaccggttgctgctccagtggctccagtagctcagaaatctgatgcacctgatcgtcttaataatttagttggcattgggtatcaatcatttgagaatgctgttttgaagaaactcgcacagatggtatatgtcagaaattgctggagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

213

Amino Acids

22.82

Weight (kDa)

10.03

Isoelectric Point (pI)

17.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58380 AT1G58684 AT1G58983 AT1G59359 AT2G41840 AT3G57490
fragaria_vesca	FvH4_6g30350
malus_domestica	MD01G1213700.v1.1 MD03G1173600.v1.1 MD11G1191800.v1.1
prunus_persica	Prupe.2G075700_v2.0.a1 Prupe.2G075800_v2.0.a1
pyrus_communis	pycom03g13120 pycom11g16750
rosa_chinensis	RchiOBHm_Chr1g0319931 RchiOBHm_Chr2g0088631 RchiOBHm_Chr2g0091771 RchiOBHm_Chr2g0112861 RchiOBHm_Chr2g0136671 RchiOBHm_Chr5g0009771
rosa_laevigata	RLG00000004173 RLG00000019545
rosa_multiflora	Rmu_sc0000199.1_g000025 Rmu_sc0000213.1_g000003 Rmu_sc0000897.1_g000002 Rmu_sc0001299.1_g000030 Rmu_sc0001772.1_g000057 Rmu_sc0006440.1_g000007 Rmu_sc0006440.1_g000008 Rmu_sc0016044.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091420 Rroxscaffold_2G00148850 Rroxscaffold_5G00343290 Rroxscaffold_5G00345770
rosa_rugosa	Rorug01G0043800 Rorug01G0043900 Rorug01G0044000 Rorug01G0044100 Rorug01G0044200 Rorug01G0044300 Rorug02G0332200 Rorug03G0321500 Rorug04G0348800 Rorug05G0462600 Rorug07G0063800
rosa_samantha	Rh1AG112900 Rh1CG214700 Rh2AG065200 Rh2AG383100 Rh2BG064600 Rh2BG389800 Rh2BG508900 Rh2CG066100 Rh2CG241700 Rh2CG241800 Rh2CG369500 Rh2DG064500 Rh2DG406400 Rh2DG520600 Rh3CG318800 Rh4AG273900 Rh4BG279600 Rh4CG380100 Rh5AG485400 Rh5BG339500 Rh5CG236500 Rh5DG351900
rosa_wichuraiana	Rw2G031310 Rw7G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	371
AciI	CCGC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	400
AcyI	GRCGYC	2 cut(s)	21, 114
AgeI	ACCGGT	1 cut(s)	493
AgsI	TTSAA	4 cut(s)	67, 438, 491, 598
AhdI	GACNNNNNGTC	1 cut(s)	113
AjiI	CACGTC	1 cut(s)	103
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	4 cut(s)	133, 172, 521, 639
AluI	AGCT	4 cut(s)	133, 172, 521, 639
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	500
ApoI	RAATTY	1 cut(s)	400
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
AsiGI	ACCGGT	1 cut(s)	493
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	23
AsuHPI	GGTGA	3 cut(s)	190, 229, 467
BalI	TGGCCA	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	20
BauI	CACGAG	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	487
BccI	CCATC	2 cut(s)	262, 607
BfaI	CTAG	3 cut(s)	291, 306, 363
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	2 cut(s)	19, 501
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	2 cut(s)	20, 502
BmeRI	GACNNNNNGTC	1 cut(s)	113
BmgBI	CACGTC	1 cut(s)	103
BmiI	GGNNCC	4 cut(s)	22, 154, 312, 513
BmsI	GCATC	1 cut(s)	523
BpiI	GAAGAC	1 cut(s)	70
BpmI	CTGGAG	2 cut(s)	489, 498
Bpu1102I	GCTNAGC	1 cut(s)	168
BsaHI	GRCGYC	2 cut(s)	21, 114
BsaJI	CCNNGG	1 cut(s)	49
BsaWI	WCCGGW	2 cut(s)	239, 493
Bse118I	RCCGGY	1 cut(s)	493
Bse1I	ACTGG	4 cut(s)	31, 457, 506, 515
Bse3DI	GCAATG	2 cut(s)	226, 470
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	2 cut(s)	10, 273
BseMI	GCAATG	2 cut(s)	226, 470
BseMII	CTCAG	1 cut(s)	536
BseNI	ACTGG	4 cut(s)	31, 457, 506, 515
BseRI	GAGGAG	3 cut(s)	27, 205, 270
BseXI	GCAGC	1 cut(s)	487
BshFI	GGCC	1 cut(s)	48
BshNI	GGYRCC	1 cut(s)	20
BshTI	ACCGGT	1 cut(s)	493
BsiSI	CCGG	2 cut(s)	240, 494
BsmI	GAATGC	1 cut(s)	592
BsnI	GGCC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	204, 541
Bsp1720I	GCTNAGC	1 cut(s)	168
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	535
BspLI	GGNNCC	4 cut(s)	22, 154, 312, 513
BspT107I	GGYRCC	1 cut(s)	20
BsrDI	GCAATG	2 cut(s)	226, 470
BsrFI	RCCGGY	1 cut(s)	493
BsrI	ACTGG	4 cut(s)	31, 457, 506, 515
BssAI	RCCGGY	1 cut(s)	493
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	2 cut(s)	204, 541
BssNI	GRCGYC	2 cut(s)	21, 114
BssSI	CACGAG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	282
Bst6I	CTCTTC	1 cut(s)	492
BstACI	GRCGYC	2 cut(s)	21, 114
BstC8I	GCNNGC	3 cut(s)	32, 135, 276
BstDEI	CTNAG	2 cut(s)	168, 522
BstDSI	CCRYGG	1 cut(s)	49
BstEII	GGTNACC	2 cut(s)	235, 455
BstF5I	GGATG	2 cut(s)	10, 273
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	2 cut(s)	207, 544
BstMBI	GATC	2 cut(s)	204, 541
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 120, 509, 518
BstPI	GGTNACC	2 cut(s)	235, 455
BstV1I	GCAGC	1 cut(s)	487
BstV2I	GAAGAC	1 cut(s)	70
BstXI	CCANNNNNNTGG	2 cut(s)	163, 335
BsuRI	GGCC	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	49
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	10, 273
BtsIMutI	CAGTG	2 cut(s)	24, 513
Cac8I	GCNNGC	3 cut(s)	32, 135, 276
CfoI	GCGC	1 cut(s)	23
Cfr10I	RCCGGY	1 cut(s)	493
CseI	GACGC	1 cut(s)	103
CspAI	ACCGGT	1 cut(s)	493
DdeI	CTNAG	2 cut(s)	168, 522
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	2 cut(s)	206, 543
DpnII	GATC	2 cut(s)	204, 541
DriI	GACNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	492
Eam1105I	GACNNNNNGTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	492
Eco91I	GGTNACC	2 cut(s)	235, 455
EcoO65I	GGTNACC	2 cut(s)	235, 455
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
FaiI	YATR	4 cut(s)	260, 449, 619, 621
FblI	GTMKAC	1 cut(s)	371
Fnu4HI	GCNGC	2 cut(s)	19, 501
FokI	GGATG	2 cut(s)	17, 280
Fsp4HI	GCNGC	2 cut(s)	19, 501
FspBI	CTAG	3 cut(s)	291, 306, 363
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	2 cut(s)	19, 501
GsuI	CTGGAG	2 cut(s)	489, 498
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	2 cut(s)	240, 494
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	2 cut(s)	21, 114
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HinfI	GANTC	4 cut(s)	54, 108, 181, 379
HpaII	CCGG	2 cut(s)	240, 494
HphI	GGTGA	3 cut(s)	190, 229, 467
Hpy166II	GTNNAC	2 cut(s)	354, 372
Hpy188I	TCNGA	5 cut(s)	107, 209, 525, 532, 626
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	2 cut(s)	354, 372
Hpy99I	CGWCG	2 cut(s)	86, 107
HpyAV	CCTTC	2 cut(s)	53, 313
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	3 cut(s)	123, 231, 536
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 120, 509, 518
HpyF3I	CTNAG	2 cut(s)	168, 522
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	2 cut(s)	21, 114
HspAI	GCGC	1 cut(s)	21
KasI	GGCGCC	1 cut(s)	20
Kzo9I	GATC	2 cut(s)	204, 541
LmnI	GCTCC	5 cut(s)	152, 283, 508, 517, 636
Lsp1109I	GCAGC	1 cut(s)	487
LweI	GCATC	1 cut(s)	523
MaeI	CTAG	3 cut(s)	291, 306, 363
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	3 cut(s)	197, 235, 455
MalI	GATC	2 cut(s)	206, 543
MboI	GATC	2 cut(s)	204, 541
MboII	GAAGA	3 cut(s)	70, 479, 610
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	4 cut(s)	329, 400, 553, 628
MluNI	TGGCCA	1 cut(s)	48
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	2 cut(s)	102, 373
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	7 cut(s)	5, 8, 32, 183, 186, 291, 495
Mox20I	TGGCCA	1 cut(s)	48
MroXI	GAANNNNTTC	1 cut(s)	323
MscI	TGGCCA	1 cut(s)	48
MseI	TTAA	3 cut(s)	405, 480, 549
MslI	CAYNNNNRTG	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	48
MspI	CCGG	2 cut(s)	240, 494
Mva1269I	GAATGC	1 cut(s)	592
MwoI	GCNNNNNNNGC	4 cut(s)	27, 120, 509, 518
NarI	GGCGCC	1 cut(s)	21
NdeII	GATC	2 cut(s)	204, 541
NlaIV	GGNNCC	4 cut(s)	22, 154, 312, 513
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	2 cut(s)	235, 455
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	592
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	2 cut(s)	54, 181
PinAI	ACCGGT	1 cut(s)	493
PkrI	GCNGC	2 cut(s)	20, 502
PleI	GAGTC	2 cut(s)	102, 373
PluTI	GGCGCC	1 cut(s)	24
PpsI	GAGTC	2 cut(s)	102, 373
PspEI	GGTNACC	2 cut(s)	235, 455
PspN4I	GGNNCC	4 cut(s)	22, 154, 312, 513
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	405, 480, 549
SatI	GCNGC	2 cut(s)	19, 501
Sau3AI	GATC	2 cut(s)	204, 541
SchI	GAGTC	2 cut(s)	102, 373
SfaNI	GCATC	1 cut(s)	523
SfoI	GGCGCC	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	4 cut(s)	329, 400, 553, 628
SsiI	CCGC	1 cut(s)	18
SspDI	GGCGCC	1 cut(s)	20
SspMI	CTAG	3 cut(s)	291, 306, 363
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	57, 384
TasI	AATT	4 cut(s)	329, 400, 553, 628
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	2 cut(s)	54, 181
Tru1I	TTAA	3 cut(s)	405, 480, 549
Tru9I	TTAA	3 cut(s)	405, 480, 549
TscAI	CASTG	2 cut(s)	31, 513
TseFI	GTSAC	2 cut(s)	235, 455
TseI	GCWGC	1 cut(s)	500
Tsp45I	GTSAC	2 cut(s)	235, 455
TspDTI	ATGAA	2 cut(s)	21, 348
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	2 cut(s)	31, 513
XapI	RAATTY	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	3 cut(s)	291, 306, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.