Belongs to the universal ribosomal protein uS5 family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 55 - 209 | 2.5e-16 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 276 - 347 | 1.9e-22 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_3 | PF07725 | 445 - 463 | 6e-06 | Leucine Rich Repeat |
| LRR_13 | PF23286 | 536 - 621 | 3.1e-11 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 547 - 615 | 8.7e-08 | Leucine-rich repeat region |
| C-JID | PF20160 | 839 - 906 | 1.9e-12 | C-JID domain |
| TIR | PF01582 | 990 - 1123 | 1.6e-29 | TIR domain |
| NB-ARC | PF00931 | 1148 - 1303 | 1.9e-19 | NB-ARC domain |
| NACHT | PF05729 | 1153 - 1250 | 5.2e-07 | NACHT domain |
| WHD_ROQ1 | PF23282 | 1371 - 1441 | 2.9e-19 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 1630 - 1714 | 2.4e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 1641 - 1710 | 5.7e-08 | Leucine-rich repeat region |
| C-JID | PF20160 | 1913 - 2054 | 1.9e-10 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 4730 |
| Acc36I | ACCTGC | 4 cut(s) | 2593, 3551, 4113, 4730 |
| AccB1I | GGYRCC | 1 cut(s) | 3147 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 2659, 4417, 5857 |
| AccI | GTMKAC | 4 cut(s) | 74, 3356, 3654, 5581 |
| AccIII | TCCGGA | 1 cut(s) | 1237 |
| AciI | CCGC | 9 cut(s) | 152, 193, 400, 2071, 3145, 3400, 3434, 3475, 3682 |
| AclI | AACGTT | 2 cut(s) | 1681, 4963 |
| AcoI | YGGCCR | 2 cut(s) | 3273, 6310 |
| AcuI | CTGAAG | 5 cut(s) | 2202, 2480, 2744, 5753, 6134 |
| AfaI | GTAC | 7 cut(s) | 493, 563, 2335, 2640, 5608, 5838, 6049 |
| AflII | CTTAAG | 2 cut(s) | 1297, 4579 |
| AgeI | ACCGGT | 1 cut(s) | 6236 |
| AjiI | CACGTC | 1 cut(s) | 4081 |
| AjnI | CCWGG | 8 cut(s) | 1051, 2518, 2793, 2908, 3248, 3775, 4333, 5991 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2240, 2272, 5513, 5545 |
| AleI | CACNNNNGTG | 1 cut(s) | 159 |
| Alw21I | GWGCWC | 4 cut(s) | 1101, 2652, 3171, 4058 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3665 |
| Ama87I | CYCGRG | 4 cut(s) | 219, 1658, 1859, 3501 |
| Aor13HI | TCCGGA | 1 cut(s) | 1237 |
| ApeKI | GCWGC | 5 cut(s) | 261, 1017, 3257, 3436, 3665 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 6166, 6198 |
| AseI | ATTAAT | 2 cut(s) | 1622, 4904 |
| AsiGI | ACCGGT | 1 cut(s) | 6236 |
| AspS9I | GGNCC | 6 cut(s) | 1231, 2906, 3097, 3773, 4513, 6104 |
| AsuC2I | CCSGG | 1 cut(s) | 6108 |
| AsuHPI | GGTGA | 7 cut(s) | 599, 2144, 2188, 2801, 5461, 5999, 6130 |
| AvaI | CYCGRG | 4 cut(s) | 219, 1658, 1859, 3501 |
| AvaII | GGWCC | 3 cut(s) | 1231, 3773, 4513 |
| BalI | TGGCCA | 2 cut(s) | 3275, 6312 |
| BamHI | GGATCC | 4 cut(s) | 180, 3130, 3462, 6299 |
| BanI | GGYRCC | 1 cut(s) | 3147 |
| BanII | GRGCYC | 1 cut(s) | 3171 |
| BauI | CACGAG | 2 cut(s) | 701, 3983 |
| Bbv12I | GWGCWC | 4 cut(s) | 1101, 2652, 3171, 4058 |
| BbvCI | CCTCAGC | 1 cut(s) | 4049 |
| BbvI | GCAGC | 5 cut(s) | 248, 1004, 3244, 3448, 3652 |
| BceAI | ACGGC | 3 cut(s) | 1757, 3139, 5039 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3751, 3785 |
| BciT130I | CCWGG | 8 cut(s) | 1053, 2520, 2795, 2910, 3250, 3777, 4335, 5993 |
| BciVI | GTATCC | 2 cut(s) | 1302, 4584 |
| BclI | TGATCA | 2 cut(s) | 3514, 5233 |
| BcnI | CCSGG | 1 cut(s) | 6108 |
| BfaI | CTAG | 9 cut(s) | 291, 305, 905, 2312, 3003, 3587, 4187, 5651, 5871 |
| BfmI | CTRYAG | 3 cut(s) | 1777, 5059, 5490 |
| BfrI | CTTAAG | 2 cut(s) | 1297, 4579 |
| BfuAI | ACCTGC | 4 cut(s) | 2593, 3551, 4113, 4730 |
| BfuI | GTATCC | 2 cut(s) | 1302, 4584 |
| BglII | AGATCT | 6 cut(s) | 956, 1483, 3005, 4238, 4583, 4765 |
| BisI | GCNGC | 6 cut(s) | 262, 1018, 3146, 3258, 3437, 3666 |
| BlsI | GCNGC | 6 cut(s) | 263, 1019, 3147, 3259, 3438, 3667 |
| Bme1390I | CCNGG | 9 cut(s) | 1053, 2520, 2795, 2910, 3250, 3777, 4335, 5993, 6108 |
| Bme18I | GGWCC | 3 cut(s) | 1231, 3773, 4513 |
| BmeT110I | CYCGRG | 4 cut(s) | 219, 1658, 1859, 3501 |
| BmgBI | CACGTC | 1 cut(s) | 4081 |
| BmgT120I | GGNCC | 6 cut(s) | 1231, 2906, 3097, 3773, 4513, 6104 |
| BmiI | GGNNCC | 5 cut(s) | 182, 3132, 3149, 3464, 6301 |
| BmrFI | CCNGG | 9 cut(s) | 1053, 2520, 2795, 2910, 3250, 3777, 4335, 5993, 6108 |
| BmrI | ACTGGG | 2 cut(s) | 1296, 4578 |
| BmuI | ACTGGG | 2 cut(s) | 1296, 4578 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 3244, 3276, 6123, 6155 |
| BpmI | CTGGAG | 2 cut(s) | 3271, 4403 |
| Bpu10I | CCTNAGC | 3 cut(s) | 681, 3963, 4049 |
| BpuMI | CCSGG | 1 cut(s) | 6108 |
| BsaAI | YACGTR | 1 cut(s) | 561 |
| BsaBI | GATNNNNATC | 4 cut(s) | 441, 885, 3723, 4167 |
| BsaI | GGTCTC | 5 cut(s) | 1080, 1308, 1436, 4362, 4718 |
| BsaJI | CCNNGG | 8 cut(s) | 157, 184, 1129, 3466, 3776, 4411, 4807, 5701 |
| BsaWI | WCCGGW | 3 cut(s) | 255, 1237, 6236 |
| Bse118I | RCCGGY | 1 cut(s) | 6236 |
| Bse8I | GATNNNNATC | 4 cut(s) | 441, 885, 3723, 4167 |
| BseAI | TCCGGA | 1 cut(s) | 1237 |
| BseBI | CCWGG | 8 cut(s) | 1053, 2520, 2795, 2910, 3250, 3777, 4335, 5993 |
| BseDI | CCNNGG | 8 cut(s) | 157, 184, 1129, 3466, 3776, 4411, 4807, 5701 |
| BseJI | GATNNNNATC | 4 cut(s) | 441, 885, 3723, 4167 |
| BseMII | CTCAG | 8 cut(s) | 695, 2105, 2526, 3258, 3977, 4040, 4932, 5378 |
| BseRI | GAGGAG | 4 cut(s) | 1265, 2936, 4066, 4547 |
| BseXI | GCAGC | 5 cut(s) | 248, 1004, 3244, 3448, 3652 |
| BseYI | CCCAGC | 2 cut(s) | 3288, 4299 |
| BsgI | GTGCAG | 2 cut(s) | 2571, 5769 |
| BshNI | GGYRCC | 1 cut(s) | 3147 |
| BshTI | ACCGGT | 1 cut(s) | 6236 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1101, 2652, 3171, 4058 |
| BsiHKCI | CYCGRG | 4 cut(s) | 219, 1658, 1859, 3501 |
| BsiSI | CCGG | 4 cut(s) | 256, 1238, 6107, 6237 |
| BslFI | GGGAC | 3 cut(s) | 615, 3897, 6256 |
| BsmBI | CGTCTC | 1 cut(s) | 6143 |
| BsmFI | GGGAC | 3 cut(s) | 615, 3897, 6256 |
| Bso31I | GGTCTC | 5 cut(s) | 1080, 1308, 1436, 4362, 4718 |
| BsoBI | CYCGRG | 4 cut(s) | 219, 1658, 1859, 3501 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1101, 2652, 3171, 4058 |
| Bsp13I | TCCGGA | 1 cut(s) | 1237 |
| Bsp19I | CCATGG | 2 cut(s) | 184, 3466 |
| BspACI | CCGC | 9 cut(s) | 152, 193, 400, 2071, 3145, 3400, 3434, 3475, 3682 |
| BspCNI | CTCAG | 8 cut(s) | 694, 2106, 2527, 3259, 3976, 4041, 4933, 5379 |
| BspEI | TCCGGA | 1 cut(s) | 1237 |
| BspHI | TCATGA | 1 cut(s) | 1078 |
| BspLI | GGNNCC | 5 cut(s) | 182, 3132, 3149, 3464, 6301 |
| BspMAI | CTGCAG | 2 cut(s) | 1781, 5063 |
| BspMI | ACCTGC | 4 cut(s) | 2593, 3551, 4113, 4730 |
| BspT107I | GGYRCC | 1 cut(s) | 3147 |
| BspTI | CTTAAG | 2 cut(s) | 1297, 4579 |
| BspTNI | GGTCTC | 5 cut(s) | 1080, 1308, 1436, 4362, 4718 |
| BsrFI | RCCGGY | 1 cut(s) | 6236 |
| BssAI | RCCGGY | 1 cut(s) | 6236 |
| BssECI | CCNNGG | 8 cut(s) | 157, 184, 1129, 3466, 3776, 4411, 4807, 5701 |
| BssNAI | GTATAC | 4 cut(s) | 75, 3357, 3655, 5582 |
| BssSI | CACGAG | 2 cut(s) | 701, 3983 |
| BssT1I | CCWWGG | 7 cut(s) | 157, 184, 1129, 3466, 4411, 4807, 5701 |
| Bst1107I | GTATAC | 4 cut(s) | 75, 3357, 3655, 5582 |
| Bst2BI | CACGAG | 2 cut(s) | 701, 3983 |
| Bst2UI | CCWGG | 8 cut(s) | 1053, 2520, 2795, 2910, 3250, 3777, 4335, 5993 |
| Bst6I | CTCTTC | 2 cut(s) | 2731, 4311 |
| BstAFI | CTTAAG | 2 cut(s) | 1297, 4579 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1000, 6157, 6258 |
| BstBAI | YACGTR | 1 cut(s) | 561 |
| BstDSI | CCRYGG | 2 cut(s) | 184, 3466 |
| BstEII | GGTNACC | 2 cut(s) | 2176, 5449 |
| BstNI | CCWGG | 8 cut(s) | 1053, 2520, 2795, 2910, 3250, 3777, 4335, 5993 |
| BstNSI | RCATGY | 2 cut(s) | 193, 3475 |
| BstPI | GGTNACC | 2 cut(s) | 2176, 5449 |
| BstSCI | CCNGG | 9 cut(s) | 1051, 2518, 2793, 2908, 3248, 3775, 4333, 5991, 6106 |
| BstSFI | CTRYAG | 3 cut(s) | 1777, 5059, 5490 |
| BstSNI | TACGTA | 1 cut(s) | 561 |
| BstV1I | GCAGC | 5 cut(s) | 248, 1004, 3244, 3448, 3652 |
| BstZ17I | GTATAC | 4 cut(s) | 75, 3357, 3655, 5582 |
| BsuI | GTATCC | 2 cut(s) | 1302, 4584 |
| BtgI | CCRYGG | 2 cut(s) | 184, 3466 |
| BtrI | CACGTC | 1 cut(s) | 4081 |
| BtsIMutI | CAGTG | 6 cut(s) | 735, 2339, 2484, 2664, 5612, 6306 |
| BveI | ACCTGC | 4 cut(s) | 2593, 3551, 4113, 4730 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3665 |
| CciI | TCATGA | 1 cut(s) | 1078 |
| Cfr10I | RCCGGY | 1 cut(s) | 6236 |
| Cfr13I | GGNCC | 6 cut(s) | 1231, 2906, 3097, 3773, 4513, 6104 |
| Csp6I | GTAC | 7 cut(s) | 492, 562, 2334, 2639, 5607, 5837, 6048 |
| CspAI | ACCGGT | 1 cut(s) | 6236 |
| CviQI | GTAC | 7 cut(s) | 492, 562, 2334, 2639, 5607, 5837, 6048 |
| DraI | TTTAAA | 3 cut(s) | 2013, 5295, 6094 |
| EaeI | YGGCCR | 2 cut(s) | 3273, 6310 |
| Eam1104I | CTCTTC | 2 cut(s) | 2731, 4311 |
| EarI | CTCTTC | 2 cut(s) | 2731, 4311 |
| Ecl136II | GAGCTC | 1 cut(s) | 3169 |
| Eco105I | TACGTA | 1 cut(s) | 561 |
| Eco130I | CCWWGG | 7 cut(s) | 157, 184, 1129, 3466, 4411, 4807, 5701 |
| Eco147I | AGGCCT | 3 cut(s) | 1245, 2974, 4527 |
| Eco24I | GRGCYC | 1 cut(s) | 3171 |
| Eco31I | GGTCTC | 5 cut(s) | 1080, 1308, 1436, 4362, 4718 |
| Eco47I | GGWCC | 3 cut(s) | 1231, 3773, 4513 |
| Eco53kI | GAGCTC | 1 cut(s) | 3169 |
| Eco57I | CTGAAG | 5 cut(s) | 2202, 2480, 2744, 5753, 6134 |
| Eco88I | CYCGRG | 4 cut(s) | 219, 1658, 1859, 3501 |
| Eco91I | GGTNACC | 2 cut(s) | 2176, 5449 |
| EcoICRI | GAGCTC | 1 cut(s) | 3169 |
| EcoO65I | GGTNACC | 2 cut(s) | 2176, 5449 |
| EcoRI | GAATTC | 4 cut(s) | 2050, 2681, 3394, 5879 |
| EcoRII | CCWGG | 8 cut(s) | 1051, 2518, 2793, 2908, 3248, 3775, 4333, 5991 |
| EcoT14I | CCWWGG | 7 cut(s) | 157, 184, 1129, 3466, 4411, 4807, 5701 |
| EcoT22I | ATGCAT | 4 cut(s) | 996, 2362, 3086, 5635 |
| EcoT38I | GRGCYC | 1 cut(s) | 3171 |
| ErhI | CCWWGG | 7 cut(s) | 157, 184, 1129, 3466, 4411, 4807, 5701 |
| Esp3I | CGTCTC | 1 cut(s) | 6143 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 309, 341, 3591, 3623 |
| FaqI | GGGAC | 3 cut(s) | 615, 3897, 6256 |
| FauI | CCCGC | 3 cut(s) | 186, 3407, 3468 |
| FauNDI | CATATG | 2 cut(s) | 146, 3428 |
| FbaI | TGATCA | 2 cut(s) | 3514, 5233 |
| FblI | GTMKAC | 4 cut(s) | 74, 3356, 3654, 5581 |
| Fnu4HI | GCNGC | 6 cut(s) | 262, 1018, 3146, 3258, 3437, 3666 |
| FriOI | GRGCYC | 1 cut(s) | 3171 |
| Fsp4HI | GCNGC | 6 cut(s) | 262, 1018, 3146, 3258, 3437, 3666 |
| FspBI | CTAG | 9 cut(s) | 291, 305, 905, 2312, 3003, 3587, 4187, 5651, 5871 |
| GluI | GCNGC | 6 cut(s) | 262, 1018, 3146, 3258, 3437, 3666 |
| GsaI | CCCAGC | 2 cut(s) | 3292, 4303 |
| GsuI | CTGGAG | 2 cut(s) | 3271, 4403 |
| HapII | CCGG | 4 cut(s) | 256, 1238, 6107, 6237 |
| HincII | GTYRAC | 6 cut(s) | 91, 450, 1149, 3373, 3732, 4431 |
| HindII | GTYRAC | 6 cut(s) | 91, 450, 1149, 3373, 3732, 4431 |
| HindIII | AAGCTT | 6 cut(s) | 1541, 2240, 4823, 5513, 5864, 5924 |
| HpaII | CCGG | 4 cut(s) | 256, 1238, 6107, 6237 |
| HphI | GGTGA | 7 cut(s) | 599, 2144, 2188, 2801, 5461, 5999, 6130 |
| HpyCH4IV | ACGT | 5 cut(s) | 560, 1681, 4080, 4342, 4963 |
| HpySE526I | ACGT | 5 cut(s) | 560, 1681, 4080, 4342, 4963 |
| Kpn2I | TCCGGA | 1 cut(s) | 1237 |
| Ksp22I | TGATCA | 2 cut(s) | 3514, 5233 |
| LmnI | GCTCC | 5 cut(s) | 258, 2138, 3662, 4053, 5411 |
| Lsp1109I | GCAGC | 5 cut(s) | 248, 1004, 3244, 3448, 3652 |
| MaeI | CTAG | 9 cut(s) | 291, 305, 905, 2312, 3003, 3587, 4187, 5651, 5871 |
| MaeII | ACGT | 5 cut(s) | 560, 1681, 4080, 4342, 4963 |
| MaeIII | GTNAC | 9 cut(s) | 892, 1756, 2159, 2176, 4174, 4479, 5038, 5432, 5449 |
| MfeI | CAATTG | 5 cut(s) | 1734, 2404, 2991, 5016, 5677 |
| MhlI | GDGCHC | 4 cut(s) | 1101, 2652, 3171, 4058 |
| MlsI | TGGCCA | 2 cut(s) | 3275, 6312 |
| MluNI | TGGCCA | 2 cut(s) | 3275, 6312 |
| MlyI | GAGTC | 8 cut(s) | 1266, 1591, 2810, 2993, 4328, 4548, 4873, 6141 |
| MmeI | TCCRAC | 6 cut(s) | 999, 1648, 3329, 4281, 4930, 6258 |
| Mox20I | TGGCCA | 2 cut(s) | 3275, 6312 |
| Mph1103I | ATGCAT | 4 cut(s) | 996, 2362, 3086, 5635 |
| MroI | TCCGGA | 1 cut(s) | 1237 |
| MscI | TGGCCA | 2 cut(s) | 3275, 6312 |
| MslI | CAYNNNNRTG | 6 cut(s) | 107, 159, 1139, 2553, 3389, 4421 |
| Msp20I | TGGCCA | 2 cut(s) | 3275, 6312 |
| MspCI | CTTAAG | 2 cut(s) | 1297, 4579 |
| MspI | CCGG | 4 cut(s) | 256, 1238, 6107, 6237 |
| MspR9I | CCNGG | 9 cut(s) | 1053, 2520, 2795, 2910, 3250, 3777, 4335, 5993, 6108 |
| MunI | CAATTG | 5 cut(s) | 1734, 2404, 2991, 5016, 5677 |
| MvaI | CCWGG | 8 cut(s) | 1053, 2520, 2795, 2910, 3250, 3777, 4335, 5993 |
| NciI | CCSGG | 1 cut(s) | 6108 |
| NcoI | CCATGG | 2 cut(s) | 184, 3466 |
| NdeI | CATATG | 2 cut(s) | 146, 3428 |
| NlaIV | GGNNCC | 5 cut(s) | 182, 3132, 3149, 3464, 6301 |
| NmeAIII | GCCGAG | 1 cut(s) | 5121 |
| NmuCI | GTSAC | 7 cut(s) | 892, 1756, 2176, 4174, 4479, 5038, 5449 |
| NsiI | ATGCAT | 4 cut(s) | 996, 2362, 3086, 5635 |
| NspI | RCATGY | 2 cut(s) | 193, 3475 |
| OliI | CACNNNNGTG | 1 cut(s) | 159 |
| PaeI | GCATGC | 2 cut(s) | 193, 3475 |
| PaeR7I | CTCGAG | 2 cut(s) | 219, 3501 |
| PagI | TCATGA | 1 cut(s) | 1078 |
| PaqCI | CACCTGC | 1 cut(s) | 4730 |
| PceI | AGGCCT | 3 cut(s) | 1245, 2974, 4527 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 2659, 4417, 5857 |
| PfoI | TCCNGGA | 1 cut(s) | 2518 |
| PinAI | ACCGGT | 1 cut(s) | 6236 |
| PkrI | GCNGC | 6 cut(s) | 263, 1019, 3147, 3259, 3438, 3667 |
| PleI | GAGTC | 8 cut(s) | 1266, 1590, 2809, 2993, 4327, 4548, 4872, 6140 |
| PpsI | GAGTC | 8 cut(s) | 1266, 1590, 2809, 2993, 4327, 4548, 4872, 6140 |
| Ppu21I | YACGTR | 1 cut(s) | 561 |
| PshBI | ATTAAT | 2 cut(s) | 1622, 4904 |
| Psp124BI | GAGCTC | 1 cut(s) | 3171 |
| Psp1406I | AACGTT | 2 cut(s) | 1681, 4963 |
| Psp6I | CCWGG | 8 cut(s) | 1051, 2518, 2793, 2908, 3248, 3775, 4333, 5991 |
| PspEI | GGTNACC | 2 cut(s) | 2176, 5449 |
| PspFI | CCCAGC | 2 cut(s) | 3288, 4299 |
| PspGI | CCWGG | 8 cut(s) | 1051, 2518, 2793, 2908, 3248, 3775, 4333, 5991 |
| PspN4I | GGNNCC | 5 cut(s) | 182, 3132, 3149, 3464, 6301 |
| PspPI | GGNCC | 6 cut(s) | 1231, 2906, 3097, 3773, 4513, 6104 |
| PspXI | VCTCGAGB | 2 cut(s) | 219, 3501 |
| PstI | CTGCAG | 2 cut(s) | 1781, 5063 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3665 |
| RsaI | GTAC | 7 cut(s) | 493, 563, 2335, 2640, 5608, 5838, 6049 |
| RsaNI | GTAC | 7 cut(s) | 492, 562, 2334, 2639, 5607, 5837, 6048 |
| RseI | CAYNNNNRTG | 6 cut(s) | 107, 159, 1139, 2553, 3389, 4421 |
| SacI | GAGCTC | 1 cut(s) | 3171 |
| SatI | GCNGC | 6 cut(s) | 262, 1018, 3146, 3258, 3437, 3666 |
| Sau96I | GGNCC | 6 cut(s) | 1231, 2906, 3097, 3773, 4513, 6104 |
| SchI | GAGTC | 8 cut(s) | 1266, 1591, 2810, 2993, 4328, 4548, 4873, 6141 |
| ScrFI | CCNGG | 9 cut(s) | 1053, 2520, 2795, 2910, 3250, 3777, 4335, 5993, 6108 |
| SduI | GDGCHC | 4 cut(s) | 1101, 2652, 3171, 4058 |
| SfcI | CTRYAG | 3 cut(s) | 1777, 5059, 5490 |
| Sfr274I | CTCGAG | 2 cut(s) | 219, 3501 |
| SinI | GGWCC | 3 cut(s) | 1231, 3773, 4513 |
| SlaI | CTCGAG | 2 cut(s) | 219, 3501 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 107, 159, 1139, 2553, 3389, 4421 |
| SnaBI | TACGTA | 1 cut(s) | 561 |
| SphI | GCATGC | 2 cut(s) | 193, 3475 |
| SseBI | AGGCCT | 3 cut(s) | 1245, 2974, 4527 |
| SsiI | CCGC | 9 cut(s) | 152, 193, 400, 2071, 3145, 3400, 3434, 3475, 3682 |
| SspI | AATATT | 4 cut(s) | 846, 2530, 4128, 5401 |
| SspMI | CTAG | 9 cut(s) | 291, 305, 905, 2312, 3003, 3587, 4187, 5651, 5871 |
| SstI | GAGCTC | 1 cut(s) | 3171 |
| StuI | AGGCCT | 3 cut(s) | 1245, 2974, 4527 |
| StyD4I | CCNGG | 9 cut(s) | 1051, 2518, 2793, 2908, 3248, 3775, 4333, 5991, 6106 |
| StyI | CCWWGG | 7 cut(s) | 157, 184, 1129, 3466, 4411, 4807, 5701 |
| TaiI | ACGT | 5 cut(s) | 563, 1684, 4083, 4345, 4966 |
| TaqI | TCGA | 8 cut(s) | 220, 989, 1278, 2730, 3502, 4271, 4560, 6267 |
| TaqII | GACCGA | 2 cut(s) | 3552, 3761 |
| TatI | WGTACW | 4 cut(s) | 2333, 2638, 5606, 5836 |
| TauI | GCSGC | 1 cut(s) | 3148 |
| TscAI | CASTG | 6 cut(s) | 742, 2346, 2491, 2664, 5619, 6313 |
| TseFI | GTSAC | 7 cut(s) | 892, 1756, 2176, 4174, 4479, 5038, 5449 |
| TseI | GCWGC | 5 cut(s) | 261, 1017, 3257, 3436, 3665 |
| Tsp45I | GTSAC | 7 cut(s) | 892, 1756, 2176, 4174, 4479, 5038, 5449 |
| TspGWI | ACGGA | 6 cut(s) | 58, 681, 3043, 3340, 3963, 6125 |
| TspRI | CASTG | 6 cut(s) | 742, 2346, 2491, 2664, 5619, 6313 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 2659, 4417, 5857 |
| Vha464I | CTTAAG | 2 cut(s) | 1297, 4579 |
| VpaK11BI | GGWCC | 3 cut(s) | 1231, 3773, 4513 |
| VspI | ATTAAT | 2 cut(s) | 1622, 4904 |
| XbaI | TCTAGA | 2 cut(s) | 290, 3002 |
| XceI | RCATGY | 2 cut(s) | 193, 3475 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 2555, 3622, 4805 |
| XhoI | CTCGAG | 2 cut(s) | 219, 3501 |
| XmiI | GTMKAC | 4 cut(s) | 74, 3356, 3654, 5581 |
| XspI | CTAG | 9 cut(s) | 291, 305, 905, 2312, 3003, 3587, 4187, 5651, 5871 |
| Zsp2I | ATGCAT | 4 cut(s) | 996, 2362, 3086, 5635 |