Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014252

Physical Location & Seq

Genomic Coordinates Forward (+)

1756010 .. 1761018

Gene Structure 5009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g01960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGCAGAAGAGGGAGTTCAATAAGTCCGGTGGATCTTACGGCGGAGCCTCCGCTCCTCCGGCGAAGCGAGGCCGTCCATTCGGAAGCGGCAACAGTAGCGCCGCAGCTGCTGCTGCCGCCGCCGCCGCCGCCGCCGATCACACCGCAGCTCCGTCGAATCTCCTCGGTCCTTCTCTCCTCGTCCACAACGCCTTCACCGTTGAAAACAATAAAAGAATAGTCCACGCTCTTCAGAGCGGACTGAAGAGTGAGCTGACATGGGCTTTGAACACTCTCACATTACTATCCTTCAAAGAAAAAGATGACAATCGAAAAGATAGCAATAATGCTCTTACGAGGATTTCCGGCTTGCTTGATGCTCTCCTCACTGTTATTGATGATTGGCGTGATATAGCGCTGCCTAAGGAACATGTGAGGGCACCGAGAGTGAGGAATTTAGGTGCGAATTTGCTTGTGACTGGGTTCGGAAATGAGTACGAGGTGTTGGGGTCAAATAGCAGTGTCCCACATCCGGGCTTAGGATCTGGTGCTCAAGATGCGTCTATGCTGAGTAATGTGAGCAATCTTCGTTCTTCGGAGTGGTGGCTTGAGGAAGATGGTCTGTTTAATCTTGATGATGAAGGTAGAGCGGAAAGACAGCAATGTGCTGTTGCGGCTTCTAATATCATTCGCAACTTCTCTTTCATGCAAGACAATGAGACCATTATGGCTTTCCATCGCCATTGTCTGGAAACATTATTCCAGTGCATAGAAGATTACATCACAGAAGATGAAGAACTTGTGACAAATGCTCTCGAAACAATTGTAAATTTGTCTCCAATGCTGGATCTTCAAGTTTTTGGTTCATCAAAGGCATCCTACATCAAGATGACAGCAAAACGTGCAGTTCAAGCCATAGTTGGTGTGCTGGAGTCTCCGGTCAAAGCTTGGCATTGCTCTGCAGCAGAGTTACTTGGGCGTTTGGTCATAAATCCTGATAATGAACCTTTTCTTCTTCCCTTCATTCCACAGATACACAAACGATTAGTTGATCTTATGAGCTTACCAGCATTTGATGCACAAGCAGCTGCTGTTGGTGCGCTCTATAACTTCTCTGAAGTAAATATGGACTGCAGACTAAAACTTGCTAACGAGCGATGGGCAATTGATCGACTGCTAAAAGTTATAAAGGGGCCCCATCCTATTCCCGATATTTGCAAGAAAGCTGCTATGATAGTAGAAAGCCTCGTGTCTGAACCACAGAACAGAGGAATGCTGCTAGCTTATGAGAATGCATTTGCAGAAGTACTATTCTCAGATACCAGATGTTCTGAAATCTTTGCCAGAATTTTGTATGAACTGACGTCTAGACCAAACAACAAAGTGGCAGCAGCCCGTGGTATTTGGGGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAF250_C

Protein Analysis

465

Amino Acids

50.73

Weight (kDa)

5.87

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22990
fragaria_vesca	FvH4_4g01960
malus_domestica	MD13G1203000.v1.1 MD16G1218200.v1.1
prunus_persica	Prupe.1G025500_v2.0.a1
pyrus_communis	pycom13g17630 pycom16g17250
rosa_chinensis	RchiOBHm_Chr4g0388931
rosa_laevigata	RLG00000010006
rosa_multiflora	Rmu_sc0005486.1_g000003
rosa_roxburghii	Rroxscaffold_5G00335250
rosa_rugosa	Rorug03G0321400 Rorug03G0321500
rosa_samantha	Rh4AG025800 Rh4BG019100 Rh4DG019600
rosa_wichuraiana	Rw4G001860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1166
AatII	GACGTC	1 cut(s)	1346
AccB1I	GGYRCC	1 cut(s)	418
AccB7I	CCANNNNNTGG	1 cut(s)	727
AccBSI	CCGCTC	3 cut(s)	53, 237, 629
AclWI	GGATC	3 cut(s)	40, 529, 834
AcsI	RAATTY	4 cut(s)	433, 445, 808, 1326
AcuI	CTGAAG	3 cut(s)	215, 263, 1116
AcyI	GRCGYC	1 cut(s)	1343
AfaI	GTAC	2 cut(s)	476, 1287
AfeI	AGCGCT	1 cut(s)	396
AfiI	CCNNNNNNNGG	4 cut(s)	511, 512, 518, 727
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	6 cut(s)	19, 203, 268, 292, 833, 890
AluBI	AGCT	8 cut(s)	107, 149, 253, 926, 1041, 1067, 1205, 1262
AluI	AGCT	8 cut(s)	107, 149, 253, 926, 1041, 1067, 1205, 1262
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	3 cut(s)	692, 819, 918
AlwI	GGATC	3 cut(s)	40, 529, 834
AlwNI	CAGNNNCTG	2 cut(s)	110, 1070
Aor51HI	AGCGCT	1 cut(s)	396
AoxI	GGCC	2 cut(s)	70, 1172
ApaI	GGGCCC	1 cut(s)	1176
ApoI	RAATTY	4 cut(s)	433, 445, 808, 1326
ArsI	GACNNNNNNTTYG	2 cut(s)	247, 279
Asp700I	GAANNNNTTC	1 cut(s)	987
AspLEI	GCGC	3 cut(s)	101, 397, 1081
AspS9I	GGNCC	3 cut(s)	167, 1172, 1173
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	1 cut(s)	187
AsuNHI	GCTAGC	1 cut(s)	1258
AvaII	GGWCC	1 cut(s)	167
AxyI	CCTNAGG	1 cut(s)	402
BaeGI	GKGCMC	2 cut(s)	421, 1176
BanI	GGYRCC	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	1176
BauI	CACGAG	1 cut(s)	1226
Bbv12I	GWGCWC	1 cut(s)	532
BccI	CCATC	4 cut(s)	590, 723, 1131, 1185
BceAI	ACGGC	2 cut(s)	55, 57
BcgI	CGANNNNNNTGC	2 cut(s)	135, 169
BcnI	CCSGG	1 cut(s)	513
BcoDI	GTCTC	3 cut(s)	692, 819, 918
BfaI	CTAG	2 cut(s)	1259, 1347
BfmI	CTRYAG	2 cut(s)	939, 1111
BfoI	RGCGCY	2 cut(s)	102, 398
BmcAI	AGTACT	1 cut(s)	1287
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	3 cut(s)	167, 1172, 1173
BmiI	GGNNCC	5 cut(s)	46, 420, 1173, 1174, 1175
BmrFI	CCNGG	1 cut(s)	513
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	4 cut(s)	346, 526, 863, 1045
BmtI	GCTAGC	1 cut(s)	1262
BmuI	ACTGGG	1 cut(s)	468
BpmI	CTGGAG	1 cut(s)	929
Bpu10I	CCTNAGC	1 cut(s)	517
BpuEI	CTTGAG	2 cut(s)	516, 608
BpuMI	CCSGG	1 cut(s)	513
BsaBI	GATNNNNATC	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	1343
BsaI	GGTCTC	1 cut(s)	692
BsaJI	CCNNGG	2 cut(s)	163, 1375
BsaWI	WCCGGW	2 cut(s)	26, 916
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	4 cut(s)	511, 512, 518, 727
Bse1I	ACTGG	2 cut(s)	463, 742
Bse21I	CCTNAGG	1 cut(s)	402
Bse3DI	GCAATG	2 cut(s)	647, 931
Bse8I	GATNNNNATC	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	163, 1375
BseGI	GGATG	3 cut(s)	508, 854, 1177
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	4 cut(s)	511, 512, 518, 727
BseMI	GCAATG	2 cut(s)	647, 931
BseMII	CTCAG	2 cut(s)	539, 1308
BseNI	ACTGG	2 cut(s)	463, 742
BseRI	GAGGAG	4 cut(s)	45, 152, 167, 353
BseSI	GKGCMC	2 cut(s)	421, 1176
BsgI	GTGCAG	1 cut(s)	903
BshFI	GGCC	2 cut(s)	72, 1174
BshNI	GGYRCC	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	532
BsiSI	CCGG	5 cut(s)	27, 59, 345, 512, 917
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	4 cut(s)	511, 512, 518, 727
BsmAI	GTCTC	3 cut(s)	692, 819, 918
BsmFI	GGGAC	1 cut(s)	488
BsmI	GAATGC	2 cut(s)	1257, 1276
BsnI	GGCC	2 cut(s)	72, 1174
Bso31I	GGTCTC	1 cut(s)	692
Bsp120I	GGGCCC	1 cut(s)	1172
Bsp1286I	GDGCHC	3 cut(s)	421, 532, 1176
Bsp143I	GATC	6 cut(s)	32, 136, 521, 826, 1030, 1147
BspANI	GGCC	2 cut(s)	72, 1174
BspCNI	CTCAG	2 cut(s)	540, 1307
BspLI	GGNNCC	5 cut(s)	46, 420, 1173, 1174, 1175
BspMAI	CTGCAG	2 cut(s)	943, 1115
BspOI	GCTAGC	1 cut(s)	1262
BspPI	GGATC	3 cut(s)	40, 529, 834
BspQI	GCTCTTC	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	418
BspTNI	GGTCTC	1 cut(s)	692
BsrBI	CCGCTC	3 cut(s)	53, 237, 629
BsrDI	GCAATG	2 cut(s)	647, 931
BsrI	ACTGG	2 cut(s)	463, 742
BssECI	CCNNGG	2 cut(s)	163, 1375
BssMI	GATC	6 cut(s)	32, 136, 521, 826, 1030, 1147
BssNI	GRCGYC	1 cut(s)	1343
BssSI	CACGAG	1 cut(s)	1226
Bst2BI	CACGAG	1 cut(s)	1226
Bst4CI	ACNGT	3 cut(s)	95, 199, 370
Bst6I	CTCTTC	3 cut(s)	2, 234, 239
BstACI	GRCGYC	1 cut(s)	1343
BstAPI	GCANNNNNTGC	3 cut(s)	110, 881, 1055
BstC8I	GCNNGC	2 cut(s)	350, 1260
BstDEI	CTNAG	4 cut(s)	402, 517, 548, 1294
BstDSI	CCRYGG	1 cut(s)	1375
BstF5I	GGATG	3 cut(s)	508, 854, 1177
BstH2I	RGCGCY	2 cut(s)	102, 398
BstHHI	GCGC	3 cut(s)	101, 397, 1081
BstKTI	GATC	6 cut(s)	35, 139, 524, 829, 1033, 1150
BstMAI	GTCTC	3 cut(s)	692, 819, 918
BstMBI	GATC	6 cut(s)	32, 136, 521, 826, 1030, 1147
BstNSI	RCATGY	2 cut(s)	413, 1393
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	2 cut(s)	939, 1111
BstSLI	GKGCMC	2 cut(s)	421, 1176
BstX2I	RGATCY	3 cut(s)	32, 521, 826
BstYI	RGATCY	3 cut(s)	32, 521, 826
Bsu36I	CCTNAGG	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	72, 1174
BtgI	CCRYGG	1 cut(s)	1375
BtgZI	GCGATG	2 cut(s)	701, 1150
BtsCI	GGATG	3 cut(s)	508, 854, 1177
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	3 cut(s)	366, 505, 749
Cac8I	GCNNGC	2 cut(s)	350, 1260
CaiI	CAGNNNCTG	2 cut(s)	110, 1070
CfoI	GCGC	3 cut(s)	101, 397, 1081
Cfr13I	GGNCC	3 cut(s)	167, 1172, 1173
CseI	GACGC	1 cut(s)	528
Csp6I	GTAC	2 cut(s)	475, 1286
CviAII	CATG	4 cut(s)	258, 410, 685, 1390
CviQI	GTAC	2 cut(s)	475, 1286
DdeI	CTNAG	4 cut(s)	402, 517, 548, 1294
DpnI	GATC	6 cut(s)	34, 138, 523, 828, 1032, 1149
DpnII	GATC	6 cut(s)	32, 136, 521, 826, 1030, 1147
Eam1104I	CTCTTC	3 cut(s)	2, 234, 239
EarI	CTCTTC	3 cut(s)	2, 234, 239
EciI	GGCGGA	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	1176
Eco31I	GGTCTC	1 cut(s)	692
Eco47I	GGWCC	1 cut(s)	167
Eco47III	AGCGCT	1 cut(s)	396
Eco57I	CTGAAG	3 cut(s)	215, 263, 1116
Eco81I	CCTNAGG	1 cut(s)	402
EcoO109I	RGGNCCY	2 cut(s)	1172, 1173
EcoT22I	ATGCAT	1 cut(s)	1276
EcoT38I	GRGCYC	1 cut(s)	1176
FaeI	CATG	4 cut(s)	261, 413, 688, 1393
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	4 cut(s)	257, 409, 684, 1389
FokI	GGATG	3 cut(s)	495, 841, 1164
FriOI	GRGCYC	1 cut(s)	1176
FspBI	CTAG	2 cut(s)	1259, 1347
GlaI	GCGC	3 cut(s)	100, 396, 1080
GsuI	CTGGAG	1 cut(s)	929
HaeII	RGCGCY	2 cut(s)	102, 398
HaeIII	GGCC	2 cut(s)	72, 1174
HapII	CCGG	5 cut(s)	27, 59, 345, 512, 917
HgaI	GACGC	1 cut(s)	528
HhaI	GCGC	3 cut(s)	101, 397, 1081
Hin1I	GRCGYC	1 cut(s)	1343
Hin1II	CATG	4 cut(s)	261, 413, 688, 1393
Hin6I	GCGC	3 cut(s)	99, 395, 1079
HinP1I	GCGC	3 cut(s)	99, 395, 1079
HindIII	AAGCTT	1 cut(s)	924
HinfI	GANTC	2 cut(s)	157, 911
HpaII	CCGG	5 cut(s)	27, 59, 345, 512, 917
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	2 cut(s)	184, 223
Hpy188I	TCNGA	8 cut(s)	83, 234, 467, 577, 1096, 1234, 1297, 1312
Hpy188III	TCNNGA	8 cut(s)	533, 611, 728, 794, 865, 974, 1187, 1347
Hpy8I	GTNNAC	2 cut(s)	184, 223
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	5 cut(s)	180, 202, 298, 614, 1009
HpyCH4III	ACNGT	3 cut(s)	95, 199, 370
HpyCH4IV	ACGT	2 cut(s)	880, 1343
HpyF3I	CTNAG	4 cut(s)	402, 517, 548, 1294
HpySE526I	ACGT	2 cut(s)	880, 1343
Hsp92I	GRCGYC	1 cut(s)	1343
Hsp92II	CATG	4 cut(s)	261, 413, 688, 1393
HspAI	GCGC	3 cut(s)	99, 395, 1079
Kzo9I	GATC	6 cut(s)	32, 136, 521, 826, 1030, 1147
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	3 cut(s)	44, 58, 154
LweI	GCATC	4 cut(s)	346, 526, 863, 1045
MaeI	CTAG	2 cut(s)	1259, 1347
MaeII	ACGT	2 cut(s)	880, 1343
MaeIII	GTNAC	3 cut(s)	454, 781, 948
MalI	GATC	6 cut(s)	34, 138, 523, 828, 1032, 1149
MbiI	CCGCTC	3 cut(s)	53, 237, 629
MboI	GATC	6 cut(s)	32, 136, 521, 826, 1030, 1147
MfeI	CAATTG	2 cut(s)	801, 1143
MflI	RGATCY	3 cut(s)	32, 521, 826
MhlI	GDGCHC	3 cut(s)	421, 532, 1176
MluCI	AATT	6 cut(s)	433, 445, 801, 808, 1143, 1326
MlyI	GAGTC	1 cut(s)	920
Mph1103I	ATGCAT	1 cut(s)	1276
MroXI	GAANNNNTTC	1 cut(s)	987
MseI	TTAA	1 cut(s)	606
MslI	CAYNNNNRTG	1 cut(s)	866
MspA1I	CMGCKG	2 cut(s)	107, 1067
MspI	CCGG	5 cut(s)	27, 59, 345, 512, 917
MspR9I	CCNGG	1 cut(s)	513
MunI	CAATTG	2 cut(s)	801, 1143
Mva1269I	GAATGC	2 cut(s)	1257, 1276
NciI	CCSGG	1 cut(s)	513
NdeII	GATC	6 cut(s)	32, 136, 521, 826, 1030, 1147
NheI	GCTAGC	1 cut(s)	1258
NlaIII	CATG	4 cut(s)	261, 413, 688, 1393
NlaIV	GGNNCC	5 cut(s)	46, 420, 1173, 1174, 1175
NmuCI	GTSAC	2 cut(s)	454, 781
NsiI	ATGCAT	1 cut(s)	1276
NspI	RCATGY	2 cut(s)	413, 1393
PciI	ACATGT	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PctI	GAATGC	2 cut(s)	1257, 1276
PdmI	GAANNNNTTC	1 cut(s)	987
PfeI	GAWTC	1 cut(s)	157
PflMI	CCANNNNNTGG	1 cut(s)	727
PleI	GAGTC	1 cut(s)	919
PpsI	GAGTC	1 cut(s)	919
PscI	ACATGT	1 cut(s)	409
PsiI	TTATAA	1 cut(s)	1166
PspN4I	GGNNCC	5 cut(s)	46, 420, 1173, 1174, 1175
PspOMI	GGGCCC	1 cut(s)	1172
PspPI	GGNCC	3 cut(s)	167, 1172, 1173
PstI	CTGCAG	2 cut(s)	943, 1115
PstNI	CAGNNNCTG	2 cut(s)	110, 1070
PsuI	RGATCY	3 cut(s)	32, 521, 826
PvuII	CAGCTG	2 cut(s)	107, 1067
RsaI	GTAC	2 cut(s)	476, 1287
RsaNI	GTAC	2 cut(s)	475, 1286
RseI	CAYNNNNRTG	1 cut(s)	866
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	606
Sau3AI	GATC	6 cut(s)	32, 136, 521, 826, 1030, 1147
Sau96I	GGNCC	3 cut(s)	167, 1172, 1173
ScaI	AGTACT	1 cut(s)	1287
SchI	GAGTC	1 cut(s)	920
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	3 cut(s)	421, 532, 1176
SfaNI	GCATC	4 cut(s)	346, 526, 863, 1045
SfcI	CTRYAG	2 cut(s)	939, 1111
SinI	GGWCC	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	866
SmlI	CTYRAG	2 cut(s)	531, 587
SmoI	CTYRAG	2 cut(s)	531, 587
Sse9I	AATT	6 cut(s)	433, 445, 801, 808, 1143, 1326
SspMI	CTAG	2 cut(s)	1259, 1347
StyD4I	CCNGG	1 cut(s)	511
TaaI	ACNGT	3 cut(s)	95, 199, 370
TaiI	ACGT	2 cut(s)	883, 1346
TaqI	TCGA	4 cut(s)	155, 310, 795, 1150
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	6 cut(s)	433, 445, 801, 808, 1143, 1326
TatI	WGTACW	1 cut(s)	1285
TauI	GCSGC	9 cut(s)	90, 104, 119, 122, 125, 128, 131, 134, 656
TfiI	GAWTC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TscAI	CASTG	3 cut(s)	373, 505, 749
TseFI	GTSAC	2 cut(s)	454, 781
Tsp45I	GTSAC	2 cut(s)	454, 781
TspDTI	ATGAA	7 cut(s)	633, 673, 786, 834, 991, 996, 1350
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	3 cut(s)	373, 505, 749
Van91I	CCANNNNNTGG	1 cut(s)	727
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	4 cut(s)	433, 445, 808, 1326
XbaI	TCTAGA	1 cut(s)	1346
XceI	RCATGY	2 cut(s)	413, 1393
XmnI	GAANNNNTTC	1 cut(s)	987
XspI	CTAG	2 cut(s)	1259, 1347
ZraI	GACGTC	1 cut(s)	1344
ZrmI	AGTACT	1 cut(s)	1287
Zsp2I	ATGCAT	1 cut(s)	1276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.