Prupe.1G025500_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
1758692 .. 1761948
3257 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G025500.1

Sequence Viewer

Length: 1401 bp
ATGCAGAAGAGGGAGCAGAGCAAGTTAGGTGGAGTGGGTGGCGGGGCCTCGGCGCCGCCGGCGAAAAGAGGCCGCCCATTCGGAAGCGGCGGGAATAGCGCCGCAGCTGCGGCTGCCGCCGCCGCCGAAACGGCAGCTCCGTCGACTCTTCTCGGTCCTTCCCTCCACGTCCACAGTTCCTTCGCCGATCAGAACAATAAAAGGATAGTTCTGGCTCTGCAGAGTGGGCTGAAGAGTGAGTTGACATGGGCATTGAACACTCTCACATTACTCTCTTTCAAAGAAAAAGATGACATGCGCAAAGACACAACCCCTCTTGCAAAGATTCCTGGCTTGCTTGATGCTCTCCTCAGTGTTATTGATGATTGGCGTGATATAGCCCTTCCGAAGGAACACGTAAAGGCGCCGAGAGTCAGAAATTTGGGTGCAAATTTGCTTGTAACTGGGTTTGGAAATGAGTACGAGGCATTAGGTTCAAATGGCACTCTCCCACTTCCTGGCTTGGGATCCAGTTCTCAAGAAGCATCGGTGCTGAGTAATGTGACCAAACTTCGTTCTTCTTCAGAGTGGTGGCTTGATGAAGATGGTCTGTTTAATCTAGATGAAGAAGGTCGAGCAGAAAGACAGCAGTGTGCTGTTGCTGCTTCCAATATCATTCGCAACTTCTCTTTCATGCCAGATAATGAAGTCATTATGGCCCAGCATCGCCATTGTCTGGAAACAGTGTTCCAGTGCATAGAAGATTACCTTACAGAGGATGAGGAACTTGTGACAAATGCTCTTGAGACAATTGTAAATTTGGCTCCGTTGCTTGATCTTGGAATTTTCAGCTCATCAAAGCCATCCTACATCAAGATAACAGGAAAACGAGCAGTTCAAGCTATCATGGGGATGCTGGGATCTGTAGTCAAAACCTGGCATTGTGCTGCAGCTGAGTTACTCGGGCGTCTGATCATAAACCCTGATAATGAATCTTTCCTTCTTCCCTTTGTTCCACAGATACATAAGCGATTGGTTGATCTTATGAGCTTACCATCAGTAGATGCGCAAACAGCACATGGGGCACAAGCGGCTGCAGTTGGCGCACTCTACAACCTCGCTGAAGTTAATATGGACTGCAGGCTAAAACTAGCTAGTGAGCGATGGGCAATTGATAGACTGTTAAAAGTTATCAAGGCACCCCATCCAGTTCCTGAAGTTTGCAGGAAAGCTGCTATGATATTGGAAAGTCTTGTGTCTGAGCCACAAAACCGAGCCTTGCTGCTAGCTTATGAGAATGCATTTGCTGAAATACTATTCTCAGATGCCAGGTATTCCGATACCTTTGCCAGGATTTTGTACGAACTGACGTCTAGACCAAACAACAAAGTGGCAGCAGCCCGTGGTGTTTGGGGAATGTAA

Protein Analysis

467

Amino Acids

50.5

Weight (kDa)

6.05

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22990
fragaria_vesca FvH4_4g01960
malus_domestica MD13G1203000.v1.1 MD16G1218200.v1.1
prunus_persica Prupe.1G025500_v2.0.a1
pyrus_communis pycom13g17630 pycom16g17250
rosa_chinensis RchiOBHm_Chr4g0388931
rosa_laevigata RLG00000010006
rosa_multiflora Rmu_sc0005486.1_g000003
rosa_roxburghii Rroxscaffold_5G00335250
rosa_rugosa Rorug03G0321400 Rorug03G0321500
rosa_samantha Rh4AG025800 Rh4BG019100 Rh4DG019600
rosa_wichuraiana Rw4G001860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1352
Acc16I TGCGCA 2 cut(s) 299, 1047
AccB1I GGYRCC 3 cut(s) 52, 403, 1177
AccB7I CCANNNNNTGG 2 cut(s) 497, 715
AccI GTMKAC 1 cut(s) 143
AclWI GGATC 3 cut(s) 501, 514, 907
AcsI RAATTY 4 cut(s) 418, 430, 796, 822
AcuI CTGAAG 4 cut(s) 251, 546, 1122, 1215
AcyI GRCGYC 4 cut(s) 53, 404, 946, 1349
AfaI GTAC 2 cut(s) 461, 1340
AfiI CCNNNNNNNGG 6 cut(s) 388, 497, 503, 715, 754, 1329
AflIII ACRYGT 1 cut(s) 394
AgsI TTSAA 4 cut(s) 256, 280, 477, 878
AjiI CACGTC 1 cut(s) 169
AjnI CCWGG 5 cut(s) 328, 496, 914, 1307, 1328
AloI GAACNNNNNNTCC 2 cut(s) 710, 742
AluBI AGCT 9 cut(s) 107, 137, 831, 881, 932, 1029, 1133, 1211, 1268
AluI AGCT 9 cut(s) 107, 137, 831, 881, 932, 1029, 1133, 1211, 1268
Alw26I GTCTC 1 cut(s) 779
AlwI GGATC 3 cut(s) 501, 514, 907
AlwNI CAGNNNCTG 1 cut(s) 1193
Ama87I CYCGRG 1 cut(s) 941
AoxI GGCC 3 cut(s) 45, 70, 696
ApoI RAATTY 4 cut(s) 418, 430, 796, 822
AspLEI GCGC 6 cut(s) 55, 101, 300, 406, 1048, 1085
AspS9I GGNCC 3 cut(s) 45, 155, 697
AsuNHI GCTAGC 1 cut(s) 1264
AvaI CYCGRG 1 cut(s) 941
AvaII GGWCC 1 cut(s) 155
BaeGI GKGCMC 1 cut(s) 1066
BamHI GGATCC 1 cut(s) 506
BanI GGYRCC 3 cut(s) 52, 403, 1177
BccI CCATC 5 cut(s) 578, 850, 1042, 1137, 1191
BceAI ACGGC 1 cut(s) 147
BcgI CGANNNNNNTGC 4 cut(s) 123, 157, 1307, 1341
BciT130I CCWGG 5 cut(s) 330, 498, 916, 1309, 1330
BclI TGATCA 1 cut(s) 951
BcoDI GTCTC 1 cut(s) 779
BfaI CTAG 5 cut(s) 599, 1130, 1134, 1265, 1353
BfmI CTRYAG 5 cut(s) 218, 903, 927, 1074, 1117
BfoI RGCGCY 3 cut(s) 56, 102, 407
BglI GCCNNNNNGGC 1 cut(s) 131
Bme1390I CCNGG 5 cut(s) 330, 498, 916, 1309, 1330
Bme18I GGWCC 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 941
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 3 cut(s) 45, 155, 697
BmiI GGNNCC 6 cut(s) 46, 54, 405, 508, 804, 1179
BmrFI CCNGG 5 cut(s) 330, 498, 916, 1309, 1330
BmrI ACTGGG 1 cut(s) 453
BmsI GCATC 6 cut(s) 331, 533, 712, 882, 1033, 1294
BmtI GCTAGC 1 cut(s) 1268
BmuI ACTGGG 1 cut(s) 453
BpuEI CTTGAG 2 cut(s) 501, 803
BsaAI YACGTR 1 cut(s) 397
BsaHI GRCGYC 4 cut(s) 53, 404, 946, 1349
BsaJI CCNNGG 2 cut(s) 48, 1381
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bsc4I CCNNNNNNNGG 6 cut(s) 388, 497, 503, 715, 754, 1329
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 4 cut(s) 448, 510, 730, 1187
BseBI CCWGG 5 cut(s) 330, 498, 916, 1309, 1330
BseDI CCNNGG 2 cut(s) 48, 1381
BseGI GGATG 4 cut(s) 763, 842, 897, 1183
BseLI CCNNNNNNNGG 6 cut(s) 388, 497, 503, 715, 754, 1329
BseMII CTCAG 5 cut(s) 364, 524, 924, 1230, 1314
BseNI ACTGG 4 cut(s) 448, 510, 730, 1187
BseRI GAGGAG 1 cut(s) 338
BseSI GKGCMC 1 cut(s) 1066
BseYI CCCAGC 2 cut(s) 699, 895
BshFI GGCC 3 cut(s) 47, 72, 698
BshNI GGYRCC 3 cut(s) 52, 403, 1177
BsiHKCI CYCGRG 1 cut(s) 941
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 6 cut(s) 388, 497, 503, 715, 754, 1329
BsmAI GTCTC 1 cut(s) 779
BsmI GAATGC 1 cut(s) 1282
BsnI GGCC 3 cut(s) 47, 72, 698
BsoBI CYCGRG 1 cut(s) 941
Bsp1286I GDGCHC 1 cut(s) 1066
Bsp143I GATC 6 cut(s) 187, 506, 814, 899, 951, 1018
BspANI GGCC 3 cut(s) 47, 72, 698
BspCNI CTCAG 5 cut(s) 363, 525, 925, 1231, 1313
BspLI GGNNCC 6 cut(s) 46, 54, 405, 508, 804, 1179
BspMAI CTGCAG 4 cut(s) 222, 931, 1078, 1121
BspOI GCTAGC 1 cut(s) 1268
BspPI GGATC 3 cut(s) 501, 514, 907
BspT107I GGYRCC 3 cut(s) 52, 403, 1177
BsrFI RCCGGY 1 cut(s) 58
BsrI ACTGG 4 cut(s) 448, 510, 730, 1187
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 2 cut(s) 48, 1381
BssMI GATC 6 cut(s) 187, 506, 814, 899, 951, 1018
BssNI GRCGYC 4 cut(s) 53, 404, 946, 1349
Bst2UI CCWGG 5 cut(s) 330, 498, 916, 1309, 1330
Bst4CI ACNGT 3 cut(s) 176, 724, 1161
Bst6I CTCTTC 3 cut(s) 2, 153, 227
BstACI GRCGYC 4 cut(s) 53, 404, 946, 1349
BstBAI YACGTR 1 cut(s) 397
BstC8I GCNNGC 4 cut(s) 60, 335, 1121, 1266
BstDEI CTNAG 5 cut(s) 350, 533, 933, 1239, 1300
BstDSI CCRYGG 1 cut(s) 1381
BstENI CCTNNNNNAGG 3 cut(s) 386, 752, 1327
BstF5I GGATG 4 cut(s) 763, 842, 897, 1183
BstH2I RGCGCY 3 cut(s) 56, 102, 407
BstHHI GCGC 6 cut(s) 55, 101, 300, 406, 1048, 1085
BstKTI GATC 6 cut(s) 190, 509, 817, 902, 954, 1021
BstMAI GTCTC 1 cut(s) 779
BstMBI GATC 6 cut(s) 187, 506, 814, 899, 951, 1018
BstNI CCWGG 5 cut(s) 330, 498, 916, 1309, 1330
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 5 cut(s) 328, 496, 914, 1307, 1328
BstSFI CTRYAG 5 cut(s) 218, 903, 927, 1074, 1117
BstSLI GKGCMC 1 cut(s) 1066
BstX2I RGATCY 2 cut(s) 506, 899
BstYI RGATCY 2 cut(s) 506, 899
BsuRI GGCC 3 cut(s) 47, 72, 698
BtgI CCRYGG 1 cut(s) 1381
BtgZI GCGATG 2 cut(s) 689, 1156
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 4 cut(s) 763, 842, 897, 1183
BtsI GCAGTG 1 cut(s) 635
BtsIMutI CAGTG 4 cut(s) 358, 635, 729, 737
Cac8I GCNNGC 4 cut(s) 60, 335, 1121, 1266
CaiI CAGNNNCTG 1 cut(s) 1193
CfoI GCGC 6 cut(s) 55, 101, 300, 406, 1048, 1085
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 3 cut(s) 45, 155, 697
CseI GACGC 1 cut(s) 935
Csp6I GTAC 2 cut(s) 460, 1339
CspCI CAANNNNNGTGG 2 cut(s) 10, 45
CviAII CATG 5 cut(s) 246, 295, 673, 886, 1058
CviQI GTAC 2 cut(s) 460, 1339
DdeI CTNAG 5 cut(s) 350, 533, 933, 1239, 1300
DinI GGCGCC 2 cut(s) 54, 405
DpnI GATC 6 cut(s) 189, 508, 816, 901, 953, 1020
DpnII GATC 6 cut(s) 187, 506, 814, 899, 951, 1018
Eam1104I CTCTTC 3 cut(s) 2, 153, 227
EarI CTCTTC 3 cut(s) 2, 153, 227
Eco47I GGWCC 1 cut(s) 155
Eco57I CTGAAG 4 cut(s) 251, 546, 1122, 1215
Eco88I CYCGRG 1 cut(s) 941
EcoNI CCTNNNNNAGG 3 cut(s) 386, 752, 1327
EcoO109I RGGNCCY 1 cut(s) 45
EcoRII CCWGG 5 cut(s) 328, 496, 914, 1307, 1328
EcoT22I ATGCAT 1 cut(s) 1282
EgeI GGCGCC 2 cut(s) 54, 405
EheI GGCGCC 2 cut(s) 54, 405
FaeI CATG 5 cut(s) 249, 298, 676, 889, 1061
FalI AAGNNNNNCTT 2 cut(s) 732, 764
FatI CATG 5 cut(s) 245, 294, 672, 885, 1057
FauI CCCGC 2 cut(s) 35, 83
FbaI TGATCA 1 cut(s) 951
FblI GTMKAC 1 cut(s) 143
FokI GGATG 4 cut(s) 770, 829, 904, 1170
FspBI CTAG 5 cut(s) 599, 1130, 1134, 1265, 1353
FspI TGCGCA 2 cut(s) 299, 1047
GlaI GCGC 6 cut(s) 54, 100, 299, 405, 1047, 1084
GsaI CCCAGC 2 cut(s) 703, 899
HaeII RGCGCY 3 cut(s) 56, 102, 407
HaeIII GGCC 3 cut(s) 47, 72, 698
HapII CCGG 1 cut(s) 59
HgaI GACGC 1 cut(s) 935
HhaI GCGC 6 cut(s) 55, 101, 300, 406, 1048, 1085
Hin1I GRCGYC 4 cut(s) 53, 404, 946, 1349
Hin1II CATG 5 cut(s) 249, 298, 676, 889, 1061
Hin6I GCGC 6 cut(s) 53, 99, 298, 404, 1046, 1083
HinP1I GCGC 6 cut(s) 53, 99, 298, 404, 1046, 1083
HincII GTYRAC 2 cut(s) 144, 243
HindII GTYRAC 2 cut(s) 144, 243
HinfI GANTC 4 cut(s) 145, 325, 411, 971
HpaII CCGG 1 cut(s) 59
Hpy166II GTNNAC 3 cut(s) 144, 172, 243
Hpy188I TCNGA 9 cut(s) 83, 192, 387, 416, 565, 951, 1240, 1303, 1318
Hpy188III TCNNGA 7 cut(s) 518, 599, 716, 782, 853, 1193, 1353
Hpy8I GTNNAC 3 cut(s) 144, 172, 243
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 6 cut(s) 168, 190, 382, 392, 602, 989
HpyCH4III ACNGT 3 cut(s) 176, 724, 1161
HpyCH4IV ACGT 3 cut(s) 168, 396, 1349
HpyF3I CTNAG 5 cut(s) 350, 533, 933, 1239, 1300
HpySE526I ACGT 3 cut(s) 168, 396, 1349
Hsp92I GRCGYC 4 cut(s) 53, 404, 946, 1349
Hsp92II CATG 5 cut(s) 249, 298, 676, 889, 1061
HspAI GCGC 6 cut(s) 53, 99, 298, 404, 1046, 1083
KasI GGCGCC 2 cut(s) 52, 403
KroI GCCGGC 1 cut(s) 58
KroNI GCCGGC 1 cut(s) 60
Ksp22I TGATCA 1 cut(s) 951
Kzo9I GATC 6 cut(s) 187, 506, 814, 899, 951, 1018
LmnI GCTCC 3 cut(s) 13, 142, 808
LweI GCATC 6 cut(s) 331, 533, 712, 882, 1033, 1294
MaeI CTAG 5 cut(s) 599, 1130, 1134, 1265, 1353
MaeII ACGT 3 cut(s) 168, 396, 1349
MaeIII GTNAC 4 cut(s) 439, 541, 769, 936
MalI GATC 6 cut(s) 189, 508, 816, 901, 953, 1020
MboI GATC 6 cut(s) 187, 506, 814, 899, 951, 1018
MboII GAAGA 9 cut(s) 19, 140, 244, 549, 552, 593, 617, 752, 974
MfeI CAATTG 2 cut(s) 789, 1149
MflI RGATCY 2 cut(s) 506, 899
MhlI GDGCHC 1 cut(s) 1066
MluCI AATT 6 cut(s) 418, 430, 789, 796, 822, 1149
Mly113I GGCGCC 2 cut(s) 53, 404
MlyI GAGTC 2 cut(s) 139, 420
Mph1103I ATGCAT 1 cut(s) 1282
MreI CGCCGGCG 1 cut(s) 58
MroNI GCCGGC 1 cut(s) 58
MseI TTAA 3 cut(s) 594, 1107, 1163
MslI CAYNNNNRTG 1 cut(s) 890
MspA1I CMGCKG 2 cut(s) 107, 932
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 5 cut(s) 330, 498, 916, 1309, 1330
MunI CAATTG 2 cut(s) 789, 1149
Mva1269I GAATGC 1 cut(s) 1282
MvaI CCWGG 5 cut(s) 330, 498, 916, 1309, 1330
NaeI GCCGGC 1 cut(s) 60
NarI GGCGCC 2 cut(s) 53, 404
NdeII GATC 6 cut(s) 187, 506, 814, 899, 951, 1018
NgoMIV GCCGGC 1 cut(s) 58
NheI GCTAGC 1 cut(s) 1264
NlaIII CATG 5 cut(s) 249, 298, 676, 889, 1061
NlaIV GGNNCC 6 cut(s) 46, 54, 405, 508, 804, 1179
NmeAIII GCCGAG 2 cut(s) 29, 432
NmuCI GTSAC 2 cut(s) 541, 769
NsbI TGCGCA 2 cut(s) 299, 1047
NsiI ATGCAT 1 cut(s) 1282
NspI RCATGY 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PctI GAATGC 1 cut(s) 1282
PdiI GCCGGC 1 cut(s) 60
PfeI GAWTC 2 cut(s) 325, 971
PflMI CCANNNNNTGG 2 cut(s) 497, 715
PleI GAGTC 2 cut(s) 139, 419
PluTI GGCGCC 2 cut(s) 56, 407
PpsI GAGTC 2 cut(s) 139, 419
Ppu21I YACGTR 1 cut(s) 397
Psp6I CCWGG 5 cut(s) 328, 496, 914, 1307, 1328
PspFI CCCAGC 2 cut(s) 699, 895
PspGI CCWGG 5 cut(s) 328, 496, 914, 1307, 1328
PspN4I GGNNCC 6 cut(s) 46, 54, 405, 508, 804, 1179
PspPI GGNCC 3 cut(s) 45, 155, 697
PstI CTGCAG 4 cut(s) 222, 931, 1078, 1121
PstNI CAGNNNCTG 1 cut(s) 1193
PsuI RGATCY 2 cut(s) 506, 899
PvuII CAGCTG 2 cut(s) 107, 932
RsaI GTAC 2 cut(s) 461, 1340
RsaNI GTAC 2 cut(s) 460, 1339
RseI CAYNNNNRTG 1 cut(s) 890
SalI GTCGAC 1 cut(s) 142
SaqAI TTAA 3 cut(s) 594, 1107, 1163
Sau3AI GATC 6 cut(s) 187, 506, 814, 899, 951, 1018
Sau96I GGNCC 3 cut(s) 45, 155, 697
SchI GAGTC 2 cut(s) 139, 420
ScrFI CCNGG 5 cut(s) 330, 498, 916, 1309, 1330
SduI GDGCHC 1 cut(s) 1066
SfaNI GCATC 6 cut(s) 331, 533, 712, 882, 1033, 1294
SfcI CTRYAG 5 cut(s) 218, 903, 927, 1074, 1117
SfoI GGCGCC 2 cut(s) 54, 405
SgrAI CRCCGGYG 1 cut(s) 58
SinI GGWCC 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 890
SmlI CTYRAG 2 cut(s) 516, 782
SmoI CTYRAG 2 cut(s) 516, 782
Sse9I AATT 6 cut(s) 418, 430, 789, 796, 822, 1149
SspDI GGCGCC 2 cut(s) 52, 403
SspMI CTAG 5 cut(s) 599, 1130, 1134, 1265, 1353
StyD4I CCNGG 5 cut(s) 328, 496, 914, 1307, 1328
TaaI ACNGT 3 cut(s) 176, 724, 1161
TaiI ACGT 3 cut(s) 171, 399, 1352
TaqI TCGA 2 cut(s) 143, 613
TaqII GACCGA 1 cut(s) 143
TasI AATT 6 cut(s) 418, 430, 789, 796, 822, 1149
TauI GCSGC 9 cut(s) 58, 75, 90, 104, 113, 119, 122, 125, 1073
TfiI GAWTC 2 cut(s) 325, 971
Tru1I TTAA 3 cut(s) 594, 1107, 1163
Tru9I TTAA 3 cut(s) 594, 1107, 1163
TscAI CASTG 4 cut(s) 358, 635, 729, 737
TseFI GTSAC 2 cut(s) 541, 769
Tsp45I GTSAC 2 cut(s) 541, 769
TspDTI ATGAA 5 cut(s) 594, 618, 661, 699, 984
TspGWI ACGGA 2 cut(s) 129, 795
TspRI CASTG 4 cut(s) 358, 635, 729, 737
Van91I CCANNNNNTGG 2 cut(s) 497, 715
VpaK11BI GGWCC 1 cut(s) 155
XagI CCTNNNNNAGG 3 cut(s) 386, 752, 1327
XapI RAATTY 4 cut(s) 418, 430, 796, 822
XbaI TCTAGA 2 cut(s) 598, 1352
XceI RCATGY 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 143
XspI CTAG 5 cut(s) 599, 1130, 1134, 1265, 1353
ZraI GACGTC 1 cut(s) 1350
Zsp2I ATGCAT 1 cut(s) 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.