AT3G23255

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015310
Physical Location & Seq
Forward (+)
8311722 .. 8313125
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23255.2

Sequence Viewer

Length: 675 bp
ATGGTAGAGAGATTCTTCCCGACGAAGCGGAGCTCCGGCGACGAGAATCACCGTCGGGGAAATCTCTCGCTTCTCTCCGGTCCAATTTCCTCAGGCAAAACCTCTCTGCTCTTCCAATTAGCTCTCAATGTAGCGAGTGCTTCTACAACCACTCGTGTCGTCTTCATCTGTCACCGGAAAAAAATCGAATCCAATCCTCCGTTTCTCTCTCAGGGAATCGATCCTTCCTCTGATGTATTCAATCGAATCCAGATTAAATATGTAGATGATGATGAAGGAATCAGAAAATACTTTGCTGCGTTTCATCTTCATCATGTTGATGATTTACCATCTGCAGTTATAATCGATGATTTTGGTGATTACTTTAGCAAATTGAACTCGGTGATGAATTCTCGGGCTAGAGACATGGCGATGGTTCGGACTCTTGCTCTATGCCACAATGCTATAGTTGATGCTAAGAAAGCTTTGTGCGAGCTTGTCTTATCTGAGACTAACCATGGAGACTCTCCGAGGTCGTTGTTCATCTACAAACGATGGATTCCGAAGATCTTTACTATAAAAGGTCATGGTGATGGATCGTTTCTATTGACAAGTAATGATACATCCGAGAGAAGCGCCAAGTATTCGATCGCGCTGCAATATCTCATCTTGGAGCAGATTATTGATGATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.16

Weight (kDa)

7.77

Isoelectric Point (pI)

39.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23255 AT3G23255
fragaria_vesca FvH4_4g22791 FvH4_4g22791
malus_domestica MD13G1129600.v1.1 MD16G1129800.v1.1
prunus_persica Prupe.1G216800_v2.0.a1
pyrus_communis pycom16g11000
rosa_chinensis RchiOBHm_Chr4g0429021
rosa_laevigata RLG00000007103
rosa_roxburghii Rroxscaffold_5G00370670
rosa_rugosa Rorug04G0232100
rosa_samantha Rh4BG294300 Rh4CG309800 Rh4DG291200
rosa_wichuraiana Rw4G024970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 341
AccII CGCG 1 cut(s) 632
AciI CCGC 1 cut(s) 28
AclWI GGATC 2 cut(s) 215, 583
AcsI RAATTY 1 cut(s) 388
AgsI TTSAA 2 cut(s) 241, 376
AluBI AGCT 4 cut(s) 33, 122, 464, 475
AluI AGCT 4 cut(s) 33, 122, 464, 475
Alw21I GWGCWC 1 cut(s) 35
Alw26I GTCTC 3 cut(s) 396, 482, 495
AlwI GGATC 2 cut(s) 215, 583
Ama87I CYCGRG 1 cut(s) 393
ApeKI GCWGC 2 cut(s) 296, 634
ApoI RAATTY 1 cut(s) 388
AspLEI GCGC 2 cut(s) 617, 634
AspS9I GGNCC 1 cut(s) 80
AsuHPI GGTGA 5 cut(s) 41, 164, 368, 394, 581
AvaI CYCGRG 1 cut(s) 393
AvaII GGWCC 1 cut(s) 80
AxyI CCTNAGG 1 cut(s) 91
BanII GRGCYC 1 cut(s) 35
BauI CACGAG 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 2 cut(s) 283, 621
BccI CCATC 4 cut(s) 337, 406, 528, 566
BcgI CGANNNNNNTGC 2 cut(s) 616, 650
BcoDI GTCTC 3 cut(s) 396, 482, 495
BfaI CTAG 1 cut(s) 399
BfmI CTRYAG 2 cut(s) 333, 444
BfoI RGCGCY 1 cut(s) 618
BglII AGATCT 1 cut(s) 546
BisI GCNGC 2 cut(s) 297, 635
BlsI GCNGC 2 cut(s) 298, 636
Bme18I GGWCC 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 393
BmgT120I GGNCC 1 cut(s) 80
BmsI GCATC 1 cut(s) 442
BpiI GAAGAC 1 cut(s) 154
Bsa29I ATCGAT 2 cut(s) 219, 345
BsaJI CCNNGG 2 cut(s) 496, 509
BsaWI WCCGGW 2 cut(s) 77, 174
Bse21I CCTNAGG 1 cut(s) 91
BseCI ATCGAT 2 cut(s) 219, 345
BseDI CCNNGG 2 cut(s) 496, 509
BseGI GGATG 1 cut(s) 602
BseMII CTCAG 3 cut(s) 105, 224, 477
BseXI GCAGC 2 cut(s) 283, 621
Bsh1236I CGCG 1 cut(s) 632
Bsh1285I CGRYCG 1 cut(s) 630
BshVI ATCGAT 2 cut(s) 219, 345
BsiEI CGRYCG 1 cut(s) 630
BsiHKAI GWGCWC 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 393
BsiSI CCGG 3 cut(s) 36, 78, 175
BsmAI GTCTC 3 cut(s) 396, 482, 495
BsoBI CYCGRG 1 cut(s) 393
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 4 cut(s) 220, 546, 575, 627
Bsp19I CCATGG 1 cut(s) 496
BspACI CCGC 1 cut(s) 28
BspCNI CTCAG 3 cut(s) 104, 223, 478
BspDI ATCGAT 2 cut(s) 219, 345
BspFNI CGCG 1 cut(s) 632
BspMAI CTGCAG 1 cut(s) 337
BspPI GGATC 2 cut(s) 215, 583
BspQI GCTCTTC 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 496, 509
BssMI GATC 4 cut(s) 220, 546, 575, 627
BssSI CACGAG 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 496
Bst2BI CACGAG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 473
BstDEI CTNAG 4 cut(s) 91, 210, 456, 486
BstDSI CCRYGG 1 cut(s) 496
BstF5I GGATG 1 cut(s) 602
BstFNI CGCG 1 cut(s) 632
BstH2I RGCGCY 1 cut(s) 618
BstHHI GCGC 2 cut(s) 617, 634
BstKTI GATC 4 cut(s) 223, 549, 578, 630
BstMAI GTCTC 3 cut(s) 396, 482, 495
BstMBI GATC 4 cut(s) 220, 546, 575, 627
BstMCI CGRYCG 1 cut(s) 630
BstMWI GCNNNNNNNGC 1 cut(s) 461
BstSFI CTRYAG 2 cut(s) 333, 444
BstUI CGCG 1 cut(s) 632
BstV1I GCAGC 2 cut(s) 283, 621
BstV2I GAAGAC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
Bsu15I ATCGAT 2 cut(s) 219, 345
Bsu36I CCTNAGG 1 cut(s) 91
BsuTUI ATCGAT 2 cut(s) 219, 345
BtgI CCRYGG 1 cut(s) 496
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 1 cut(s) 602
Cac8I GCNNGC 1 cut(s) 473
CfoI GCGC 2 cut(s) 617, 634
Cfr13I GGNCC 1 cut(s) 80
ClaI ATCGAT 2 cut(s) 219, 345
CviAII CATG 4 cut(s) 314, 406, 497, 566
CviJI RGCY 5 cut(s) 33, 122, 398, 464, 475
CviKI_1 RGCY 5 cut(s) 33, 122, 398, 464, 475
DdeI CTNAG 4 cut(s) 91, 210, 456, 486
DpnI GATC 4 cut(s) 222, 548, 577, 629
DpnII GATC 4 cut(s) 220, 546, 575, 627
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 496
Eco24I GRGCYC 1 cut(s) 35
Eco47I GGWCC 1 cut(s) 80
Eco53kI GAGCTC 1 cut(s) 33
Eco81I CCTNAGG 1 cut(s) 91
Eco88I CYCGRG 1 cut(s) 393
EcoICRI GAGCTC 1 cut(s) 33
EcoRI GAATTC 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 496
EcoT38I GRGCYC 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 496
FaeI CATG 4 cut(s) 317, 409, 500, 569
FaiI YATR 9 cut(s) 261, 315, 341, 407, 433, 446, 498, 557, 567
FatI CATG 4 cut(s) 313, 405, 496, 565
Fnu4HI GCNGC 2 cut(s) 297, 635
FokI GGATG 1 cut(s) 589
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 2 cut(s) 297, 635
FspBI CTAG 1 cut(s) 399
GlaI GCGC 2 cut(s) 616, 633
GluI GCNGC 2 cut(s) 297, 635
HaeII RGCGCY 1 cut(s) 618
HapII CCGG 3 cut(s) 36, 78, 175
HhaI GCGC 2 cut(s) 617, 634
Hin1II CATG 4 cut(s) 317, 409, 500, 569
Hin6I GCGC 2 cut(s) 615, 632
HinP1I GCGC 2 cut(s) 615, 632
HindIII AAGCTT 1 cut(s) 462
HinfI GANTC 9 cut(s) 12, 46, 188, 216, 246, 279, 421, 503, 538
HpaII CCGG 3 cut(s) 36, 78, 175
HphI GGTGA 5 cut(s) 41, 164, 368, 394, 581
Hpy188I TCNGA 7 cut(s) 232, 284, 420, 487, 510, 543, 607
Hpy188III TCNNGA 2 cut(s) 19, 250
Hpy99I CGWCG 3 cut(s) 25, 44, 57
HpyAV CCTTC 2 cut(s) 234, 269
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 2 cut(s) 335, 637
HpyF10VI GCNNNNNNNGC 1 cut(s) 461
HpyF3I CTNAG 4 cut(s) 91, 210, 456, 486
Hsp92II CATG 4 cut(s) 317, 409, 500, 569
HspAI GCGC 2 cut(s) 615, 632
Kzo9I GATC 4 cut(s) 220, 546, 575, 627
LguI GCTCTTC 1 cut(s) 116
LmnI GCTCC 3 cut(s) 30, 38, 652
LpnPI CCDG 6 cut(s) 49, 78, 91, 188, 197, 263
Lsp1109I GCAGC 2 cut(s) 283, 621
LweI GCATC 1 cut(s) 442
MaeI CTAG 1 cut(s) 399
MaeIII GTNAC 1 cut(s) 170
MalI GATC 4 cut(s) 222, 548, 577, 629
MboI GATC 4 cut(s) 220, 546, 575, 627
MboII GAAGA 5 cut(s) 7, 103, 154, 299, 556
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 4 cut(s) 84, 116, 371, 388
MlyI GAGTC 2 cut(s) 415, 497
MnlI CCTC 5 cut(s) 100, 112, 207, 238, 504
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 3 cut(s) 318, 410, 570
MspI CCGG 3 cut(s) 36, 78, 175
MvnI CGCG 1 cut(s) 632
MwoI GCNNNNNNNGC 1 cut(s) 461
NcoI CCATGG 1 cut(s) 496
NdeII GATC 4 cut(s) 220, 546, 575, 627
NlaIII CATG 4 cut(s) 317, 409, 500, 569
NmuCI GTSAC 1 cut(s) 170
PciSI GCTCTTC 1 cut(s) 116
PfeI GAWTC 7 cut(s) 12, 46, 188, 216, 246, 279, 538
PkrI GCNGC 2 cut(s) 298, 636
Ple19I CGATCG 1 cut(s) 630
PleI GAGTC 2 cut(s) 415, 497
PpsI GAGTC 2 cut(s) 415, 497
PsiI TTATAA 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 35
PspPI GGNCC 1 cut(s) 80
PstI CTGCAG 1 cut(s) 337
PsuI RGATCY 1 cut(s) 546
PvuI CGATCG 1 cut(s) 630
RseI CAYNNNNRTG 3 cut(s) 318, 410, 570
SacI GAGCTC 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 2 cut(s) 297, 635
Sau3AI GATC 4 cut(s) 220, 546, 575, 627
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 2 cut(s) 415, 497
SduI GDGCHC 1 cut(s) 35
SetI ASST 7 cut(s) 35, 104, 124, 466, 477, 515, 565
SfaNI GCATC 1 cut(s) 442
SfcI CTRYAG 2 cut(s) 333, 444
SinI GGWCC 1 cut(s) 80
SmiMI CAYNNNNRTG 3 cut(s) 318, 410, 570
Sse9I AATT 4 cut(s) 84, 116, 371, 388
SsiI CCGC 1 cut(s) 28
SspMI CTAG 1 cut(s) 399
SstI GAGCTC 1 cut(s) 35
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 1 cut(s) 53
TaqI TCGA 5 cut(s) 186, 219, 244, 345, 626
TasI AATT 4 cut(s) 84, 116, 371, 388
TfiI GAWTC 7 cut(s) 12, 46, 188, 216, 246, 279, 538
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 2 cut(s) 296, 634
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 6 cut(s) 154, 288, 293, 299, 401, 511
TspGWI ACGGA 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 80
XapI RAATTY 1 cut(s) 388
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.