MD16G1129800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0015310
Physical Location & Seq
Forward (+)
9471109 .. 9472493
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1129800.v1.1.491

Sequence Viewer

Length: 705 bp
ATGGTGCGGAGATTTTTCTCCGTGCGGCAAATGGACCTCCAACAAAACCACCAATGCCACCCTATTCTACTTCTCTCTGGCCCTCCTTCCTGCGGAAAGACCTCCTTACTATTCCAGTTTGCATTCAACTCCGCCATGGAGGTCGCCCATCAATGCACAAATGGTCAAGTAACTTTCATCTGCAACCGCCGCAGGTTAGAGGTCAAACCGCCCTATCTTTCCCAGGGCGTTGATTCATCCTCCGAAGCATTTCGACGAATACGAATGAAGTATGTGGACGATGAGGAAGGAATTAAGAAGTACTTTGCTGCATTTCATCTGCACGAAACATTTCCGGCCACGGTTGTCATCGATGATTTTGGAGATTTCTTTGATACAAGGAGCTGCCAAGAAAGATACGGAAACCCACGAGGAAGAGACTTGGCAATAGTTCGGACACTGGCTTTGTGTCACAATGCCATGATCCATGCCAACGAAACAAGGCCTTGCAAGCTTGTGTTATCGGATACGCACCATGGAGACTCCCCGCGGTTGCTCTTCATATACAAAAGATGGATTTCGACCATTTTTACAATTCGAGGTGATGGCTCTGGATCGTTTATTGTTAAAGACCATAGCAATTCAGGGGGAAGCAAGAGTGCTAAGTACTCCGTAGCTCTCCAGAATCTTTTGCTAGAGGAGATCACTGAAGCAAGTGAATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

235

Amino Acids

26.55

Weight (kDa)

8.47

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23255 AT3G23255
fragaria_vesca FvH4_4g22791 FvH4_4g22791
malus_domestica MD13G1129600.v1.1 MD16G1129800.v1.1
prunus_persica Prupe.1G216800_v2.0.a1
pyrus_communis pycom16g11000
rosa_chinensis RchiOBHm_Chr4g0429021
rosa_laevigata RLG00000007103
rosa_roxburghii Rroxscaffold_5G00370670
rosa_rugosa Rorug04G0232100
rosa_samantha Rh4BG294300 Rh4CG309800 Rh4DG291200
rosa_wichuraiana Rw4G024970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 183
AccII CGCG 1 cut(s) 529
AciI CCGC 9 cut(s) 7, 25, 93, 132, 187, 190, 209, 527, 529
AclWI GGATC 2 cut(s) 457, 601
AcoI YGGCCR 1 cut(s) 336
AfaI GTAC 2 cut(s) 302, 647
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 3 cut(s) 384, 493, 656
AluI AGCT 3 cut(s) 384, 493, 656
Alw26I GTCTC 2 cut(s) 411, 513
AlwI GGATC 2 cut(s) 457, 601
AoxI GGCC 3 cut(s) 79, 336, 482
ApeKI GCWGC 2 cut(s) 308, 384
ArsI GACNNNNNNTTYG 2 cut(s) 427, 459
Asp700I GAANNNNTTC 2 cut(s) 249, 330
AspS9I GGNCC 2 cut(s) 34, 80
AsuHPI GGTGA 1 cut(s) 593
AvaII GGWCC 1 cut(s) 34
BauI CACGAG 1 cut(s) 408
BbvI GCAGC 2 cut(s) 295, 371
BccI CCATC 3 cut(s) 156, 546, 578
BcgI CGANNNNNNTGC 1 cut(s) 681
BciT130I CCWGG 1 cut(s) 224
BciVI GTATCC 1 cut(s) 499
BcoDI GTCTC 2 cut(s) 411, 513
BfaI CTAG 1 cut(s) 674
BfuAI ACCTGC 1 cut(s) 183
BfuI GTATCC 1 cut(s) 499
BisI GCNGC 4 cut(s) 26, 190, 309, 385
BlsI GCNGC 4 cut(s) 27, 191, 310, 386
BmcAI AGTACT 2 cut(s) 302, 647
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 2 cut(s) 34, 80
BmrFI CCNGG 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 644
Bsa29I ATCGAT 1 cut(s) 351
BsaJI CCNNGG 6 cut(s) 135, 222, 223, 339, 514, 527
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 115, 444
BseBI CCWGG 1 cut(s) 224
BseCI ATCGAT 1 cut(s) 351
BseDI CCNNGG 6 cut(s) 135, 222, 223, 339, 514, 527
BseGI GGATG 1 cut(s) 236
BseLI CCNNNNNNNGG 1 cut(s) 92
BseNI ACTGG 2 cut(s) 115, 444
BseRI GAGGAG 1 cut(s) 692
BseXI GCAGC 2 cut(s) 295, 371
BsgI GTGCAG 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 529
BshFI GGCC 3 cut(s) 81, 338, 484
BshVI ATCGAT 1 cut(s) 351
BsiSI CCGG 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 2 cut(s) 411, 513
BsmI GAATGC 1 cut(s) 122
BsnI GGCC 3 cut(s) 81, 338, 484
Bsp143I GATC 3 cut(s) 462, 593, 681
Bsp19I CCATGG 2 cut(s) 135, 514
BspACI CCGC 9 cut(s) 7, 25, 93, 132, 187, 190, 209, 527, 529
BspANI GGCC 3 cut(s) 81, 338, 484
BspDI ATCGAT 1 cut(s) 351
BspFNI CGCG 1 cut(s) 529
BspMI ACCTGC 1 cut(s) 183
BspPI GGATC 2 cut(s) 457, 601
BspQI GCTCTTC 1 cut(s) 542
BsrI ACTGG 2 cut(s) 115, 444
BssECI CCNNGG 6 cut(s) 135, 222, 223, 339, 514, 527
BssMI GATC 3 cut(s) 462, 593, 681
BssSI CACGAG 1 cut(s) 408
BssT1I CCWWGG 2 cut(s) 135, 514
Bst2BI CACGAG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 2 cut(s) 409, 542
BstC8I GCNNGC 1 cut(s) 491
BstDEI CTNAG 1 cut(s) 642
BstDSI CCRYGG 4 cut(s) 135, 339, 514, 527
BstF5I GGATG 1 cut(s) 236
BstFNI CGCG 1 cut(s) 529
BstKTI GATC 3 cut(s) 465, 596, 684
BstMAI GTCTC 2 cut(s) 411, 513
BstMBI GATC 3 cut(s) 462, 593, 681
BstMWI GCNNNNNNNGC 2 cut(s) 189, 490
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstUI CGCG 1 cut(s) 529
BstV1I GCAGC 2 cut(s) 295, 371
Bsu15I ATCGAT 1 cut(s) 351
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 3 cut(s) 81, 338, 484
BsuTUI ATCGAT 1 cut(s) 351
BtgI CCRYGG 4 cut(s) 135, 339, 514, 527
BtsCI GGATG 1 cut(s) 236
BtsIMutI CAGTG 2 cut(s) 437, 684
BveI ACCTGC 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 491
Cfr13I GGNCC 2 cut(s) 34, 80
Cfr42I CCGCGG 1 cut(s) 530
ClaI ATCGAT 1 cut(s) 351
Csp6I GTAC 2 cut(s) 301, 646
CviAII CATG 4 cut(s) 136, 460, 467, 515
CviJI RGCY 8 cut(s) 81, 338, 384, 443, 484, 493, 588, 656
CviKI_1 RGCY 8 cut(s) 81, 338, 384, 443, 484, 493, 588, 656
CviQI GTAC 2 cut(s) 301, 646
DdeI CTNAG 1 cut(s) 642
DpnI GATC 3 cut(s) 464, 595, 683
DpnII GATC 3 cut(s) 462, 593, 681
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 2 cut(s) 409, 542
EarI CTCTTC 2 cut(s) 409, 542
EciI GGCGGA 1 cut(s) 121
Eco130I CCWWGG 2 cut(s) 135, 514
Eco147I AGGCCT 1 cut(s) 484
Eco47I GGWCC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 2 cut(s) 135, 514
ErhI CCWWGG 2 cut(s) 135, 514
FaeI CATG 4 cut(s) 139, 463, 470, 518
FaiI YATR 8 cut(s) 137, 273, 461, 468, 516, 542, 544, 615
FalI AAGNNNNNCTT 4 cut(s) 89, 121, 287, 319
FatI CATG 4 cut(s) 135, 459, 466, 514
FauI CCCGC 1 cut(s) 534
Fnu4HI GCNGC 4 cut(s) 26, 190, 309, 385
FokI GGATG 1 cut(s) 223
Fsp4HI GCNGC 4 cut(s) 26, 190, 309, 385
FspBI CTAG 1 cut(s) 674
GluI GCNGC 4 cut(s) 26, 190, 309, 385
GsuI CTGGAG 1 cut(s) 644
HaeIII GGCC 3 cut(s) 81, 338, 484
HapII CCGG 1 cut(s) 335
Hin1II CATG 4 cut(s) 139, 463, 470, 518
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 4 cut(s) 233, 521, 664, 698
HpaII CCGG 1 cut(s) 335
HphI GGTGA 1 cut(s) 593
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 3 cut(s) 244, 435, 505
Hpy188III TCNNGA 2 cut(s) 591, 661
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 1 cut(s) 258
HpyAV CCTTC 2 cut(s) 96, 281
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4V TGCA 6 cut(s) 122, 156, 183, 311, 322, 489
HpyF10VI GCNNNNNNNGC 2 cut(s) 189, 490
HpyF3I CTNAG 1 cut(s) 642
Hsp92II CATG 4 cut(s) 139, 463, 470, 518
KspI CCGCGG 1 cut(s) 530
Kzo9I GATC 3 cut(s) 462, 593, 681
LguI GCTCTTC 1 cut(s) 542
LmnI GCTCC 1 cut(s) 381
Lsp1109I GCAGC 2 cut(s) 295, 371
MaeI CTAG 1 cut(s) 674
MaeIII GTNAC 2 cut(s) 169, 449
MalI GATC 3 cut(s) 464, 595, 683
MboI GATC 3 cut(s) 462, 593, 681
MboII GAAGA 2 cut(s) 426, 529
MluCI AATT 3 cut(s) 291, 573, 619
MlyI GAGTC 1 cut(s) 515
MmeI TCCRAC 1 cut(s) 64
MroXI GAANNNNTTC 2 cut(s) 249, 330
MseI TTAA 2 cut(s) 294, 606
MspA1I CMGCKG 1 cut(s) 529
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 224
Mva1269I GAATGC 1 cut(s) 122
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 1 cut(s) 529
MwoI GCNNNNNNNGC 2 cut(s) 189, 490
NcoI CCATGG 2 cut(s) 135, 514
NdeII GATC 3 cut(s) 462, 593, 681
NlaIII CATG 4 cut(s) 139, 463, 470, 518
NmuCI GTSAC 1 cut(s) 449
PasI CCCWGGG 1 cut(s) 223
PceI AGGCCT 1 cut(s) 484
PciSI GCTCTTC 1 cut(s) 542
PcsI WCGNNNNNNNCGW 1 cut(s) 259
PctI GAATGC 1 cut(s) 122
PdmI GAANNNNTTC 2 cut(s) 249, 330
PfeI GAWTC 3 cut(s) 233, 664, 698
PkrI GCNGC 4 cut(s) 27, 191, 310, 386
PleI GAGTC 1 cut(s) 515
PpsI GAGTC 1 cut(s) 515
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspPI GGNCC 2 cut(s) 34, 80
RsaI GTAC 2 cut(s) 302, 647
RsaNI GTAC 2 cut(s) 301, 646
SacII CCGCGG 1 cut(s) 530
SapI GCTCTTC 1 cut(s) 542
SaqAI TTAA 2 cut(s) 294, 606
SatI GCNGC 4 cut(s) 26, 190, 309, 385
Sau3AI GATC 3 cut(s) 462, 593, 681
Sau96I GGNCC 2 cut(s) 34, 80
ScaI AGTACT 2 cut(s) 302, 647
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 1 cut(s) 224
SetI ASST 9 cut(s) 39, 104, 144, 197, 204, 386, 495, 583, 658
Sfr303I CCGCGG 1 cut(s) 530
SgrBI CCGCGG 1 cut(s) 530
SinI GGWCC 1 cut(s) 34
Sse9I AATT 3 cut(s) 291, 573, 619
SseBI AGGCCT 1 cut(s) 484
SsiI CCGC 9 cut(s) 7, 25, 93, 132, 187, 190, 209, 527, 529
SspMI CTAG 1 cut(s) 674
StuI AGGCCT 1 cut(s) 484
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 2 cut(s) 135, 514
TaaI ACNGT 1 cut(s) 343
TaqI TCGA 4 cut(s) 253, 351, 560, 577
TasI AATT 3 cut(s) 291, 573, 619
TatI WGTACW 2 cut(s) 300, 645
TauI GCSGC 2 cut(s) 28, 192
TfiI GAWTC 3 cut(s) 233, 664, 698
Tru1I TTAA 2 cut(s) 294, 606
Tru9I TTAA 2 cut(s) 294, 606
TscAI CASTG 2 cut(s) 444, 691
TseFI GTSAC 1 cut(s) 449
TseI GCWGC 2 cut(s) 308, 384
Tsp45I GTSAC 1 cut(s) 449
TspDTI ATGAA 5 cut(s) 166, 225, 281, 305, 529
TspGWI ACGGA 3 cut(s) 10, 414, 640
TspRI CASTG 2 cut(s) 444, 691
VpaK11BI GGWCC 1 cut(s) 34
XmnI GAANNNNTTC 2 cut(s) 249, 330
XspI CTAG 1 cut(s) 674
ZrmI AGTACT 2 cut(s) 302, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.