Prupe.1G216800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015310
Physical Location & Seq
Reverse (-)
22990762 .. 22992555
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G216800.1

Sequence Viewer

Length: 705 bp
ATGGTGCAGAGATTTTTCTCAGTGAGGCAAATGGACCTCCAACAAAACAGCCAATCCCACCCTGTCATGCTTCTCTCTGGCCCTCCTTCCTGCGGAAAAACCTCCTTAATATTCCAGTTTGCATTCAACTCCGCAATGGGGGAGGGCCACCATGGCAATACTAATGGTAAAGTGATGTTCATTTGCAACCGCCGCAAGTTAGAGGTCAAGCCCCCTTATCTTTCCCAGGGCGTTGATTCATCCTCTGAGACATTTCAGCGCATACAAATGAAGTATGTGGATGATGATGAAGGAATTAAGAAGTACTTTGCTGCATTTCACCTGCATGAGACATTTCCTGTGGCAGTTGTTATTGATGATTTTGGAGATTTCTTTGACGAAAGGAGCTGCCAAGAAAGATATGGTAACCCACGTGGAAGAGACTTAGCAATGGTTCGGACACTAGCTTTATGTCACAATGCCATGGTTCATGCCAATGAAACGAGTCCTTGCAAGCTTCTGCTGTCTGATACACACCATGGAGACTCCCCAAGGTTGCTCTTCATCTACAAAAGATGGGTTACAACCATTTTTACAATTCAAGGTGATGGCTCTGGATCGTTTGTTCTAAAGGACAATAGCAATTCAGGGAGAACAAAGACTGCTAAGTATTCCATTTCTCTCCAGTATCTTTTTCTGGAAGAGATCACTGAAGCGAGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

235

Amino Acids

26.52

Weight (kDa)

6.75

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23255 AT3G23255
fragaria_vesca FvH4_4g22791 FvH4_4g22791
malus_domestica MD13G1129600.v1.1 MD16G1129800.v1.1
prunus_persica Prupe.1G216800_v2.0.a1
pyrus_communis pycom16g11000
rosa_chinensis RchiOBHm_Chr4g0429021
rosa_laevigata RLG00000007103
rosa_roxburghii Rroxscaffold_5G00370670
rosa_rugosa Rorug04G0232100
rosa_samantha Rh4BG294300 Rh4CG309800 Rh4DG291200
rosa_wichuraiana Rw4G024970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 330
Acc36I ACCTGC 1 cut(s) 330
AciI CCGC 4 cut(s) 93, 132, 190, 193
AclWI GGATC 1 cut(s) 604
AcvI CACGTG 1 cut(s) 413
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 2 cut(s) 92, 138
AgsI TTSAA 2 cut(s) 127, 581
AjnI CCWGG 1 cut(s) 225
AloI GAACNNNNNNTCC 2 cut(s) 588, 620
AluBI AGCT 3 cut(s) 387, 446, 496
AluI AGCT 3 cut(s) 387, 446, 496
Alw26I GTCTC 4 cut(s) 242, 323, 414, 516
AlwI GGATC 1 cut(s) 604
AoxI GGCC 2 cut(s) 79, 145
ApeKI GCWGC 2 cut(s) 311, 387
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 3 cut(s) 34, 80, 145
AsuHPI GGTGA 2 cut(s) 311, 596
AvaII GGWCC 1 cut(s) 34
BbrPI CACGTG 1 cut(s) 413
BbvI GCAGC 2 cut(s) 298, 374
BccI CCATC 2 cut(s) 549, 581
BciT130I CCWGG 1 cut(s) 227
BcoDI GTCTC 4 cut(s) 242, 323, 414, 516
BfaI CTAG 1 cut(s) 443
BfuAI ACCTGC 1 cut(s) 330
BglI GCCNNNNNGGC 1 cut(s) 153
BisI GCNGC 3 cut(s) 193, 312, 388
BlsI GCNGC 3 cut(s) 194, 313, 389
BmcAI AGTACT 1 cut(s) 305
Bme1390I CCNGG 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 3 cut(s) 34, 80, 145
BmrFI CCNGG 1 cut(s) 227
BpmI CTGGAG 1 cut(s) 647
BsaAI YACGTR 1 cut(s) 413
BsaJI CCNNGG 6 cut(s) 151, 225, 226, 462, 517, 530
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 138
Bse1I ACTGG 2 cut(s) 115, 664
Bse3DI GCAATG 2 cut(s) 141, 435
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 6 cut(s) 151, 225, 226, 462, 517, 530
BseGI GGATG 2 cut(s) 239, 286
BseLI CCNNNNNNNGG 2 cut(s) 92, 138
BseMI GCAATG 2 cut(s) 141, 435
BseMII CTCAG 2 cut(s) 33, 237
BseNI ACTGG 2 cut(s) 115, 664
BseXI GCAGC 2 cut(s) 298, 374
BsgI GTGCAG 1 cut(s) 26
BshFI GGCC 2 cut(s) 81, 147
BslI CCNNNNNNNGG 2 cut(s) 92, 138
BsmAI GTCTC 4 cut(s) 242, 323, 414, 516
BsmI GAATGC 1 cut(s) 122
BsnI GGCC 2 cut(s) 81, 147
Bsp143I GATC 2 cut(s) 596, 684
Bsp19I CCATGG 3 cut(s) 151, 462, 517
BspACI CCGC 4 cut(s) 93, 132, 190, 193
BspANI GGCC 2 cut(s) 81, 147
BspCNI CTCAG 2 cut(s) 32, 238
BspMI ACCTGC 1 cut(s) 330
BspPI GGATC 1 cut(s) 604
BspQI GCTCTTC 1 cut(s) 545
BsrDI GCAATG 2 cut(s) 141, 435
BsrI ACTGG 2 cut(s) 115, 664
BssECI CCNNGG 6 cut(s) 151, 225, 226, 462, 517, 530
BssMI GATC 2 cut(s) 596, 684
BssT1I CCWWGG 4 cut(s) 151, 462, 517, 530
Bst2UI CCWGG 1 cut(s) 227
Bst6I CTCTTC 3 cut(s) 412, 545, 675
BstBAI YACGTR 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 494
BstDEI CTNAG 4 cut(s) 19, 246, 424, 645
BstDSI CCRYGG 3 cut(s) 151, 462, 517
BstEII GGTNACC 1 cut(s) 404
BstF5I GGATG 2 cut(s) 239, 286
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 2 cut(s) 599, 687
BstMAI GTCTC 4 cut(s) 242, 323, 414, 516
BstMBI GATC 2 cut(s) 596, 684
BstMWI GCNNNNNNNGC 2 cut(s) 153, 192
BstNI CCWGG 1 cut(s) 227
BstPI GGTNACC 1 cut(s) 404
BstSCI CCNGG 1 cut(s) 225
BstV1I GCAGC 2 cut(s) 298, 374
BsuRI GGCC 2 cut(s) 81, 147
BtgI CCRYGG 3 cut(s) 151, 462, 517
BtsCI GGATG 2 cut(s) 239, 286
BtsIMutI CAGTG 2 cut(s) 27, 687
BveI ACCTGC 1 cut(s) 330
Cac8I GCNNGC 1 cut(s) 494
CfoI GCGC 1 cut(s) 261
Cfr13I GGNCC 3 cut(s) 34, 80, 145
Csp6I GTAC 1 cut(s) 304
CviAII CATG 6 cut(s) 67, 152, 326, 463, 470, 518
CviJI RGCY 8 cut(s) 51, 81, 147, 211, 387, 446, 496, 591
CviKI_1 RGCY 8 cut(s) 51, 81, 147, 211, 387, 446, 496, 591
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 4 cut(s) 19, 246, 424, 645
DpnI GATC 2 cut(s) 598, 686
DpnII GATC 2 cut(s) 596, 684
Eam1104I CTCTTC 3 cut(s) 412, 545, 675
EarI CTCTTC 3 cut(s) 412, 545, 675
Eco130I CCWWGG 4 cut(s) 151, 462, 517, 530
Eco47I GGWCC 1 cut(s) 34
Eco72I CACGTG 1 cut(s) 413
Eco91I GGTNACC 1 cut(s) 404
EcoO65I GGTNACC 1 cut(s) 404
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 4 cut(s) 151, 462, 517, 530
ErhI CCWWGG 4 cut(s) 151, 462, 517, 530
FaeI CATG 6 cut(s) 70, 155, 329, 466, 473, 521
FalI AAGNNNNNCTT 2 cut(s) 290, 322
FatI CATG 6 cut(s) 66, 151, 325, 462, 469, 517
Fnu4HI GCNGC 3 cut(s) 193, 312, 388
FokI GGATG 2 cut(s) 226, 293
Fsp4HI GCNGC 3 cut(s) 193, 312, 388
FspBI CTAG 1 cut(s) 443
GlaI GCGC 1 cut(s) 260
GluI GCNGC 3 cut(s) 193, 312, 388
GsuI CTGGAG 1 cut(s) 647
HaeIII GGCC 2 cut(s) 81, 147
HhaI GCGC 1 cut(s) 261
Hin1II CATG 6 cut(s) 70, 155, 329, 466, 473, 521
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 3 cut(s) 236, 484, 524
HphI GGTGA 2 cut(s) 311, 596
Hpy188I TCNGA 3 cut(s) 247, 438, 508
Hpy188III TCNNGA 2 cut(s) 594, 677
HpyAV CCTTC 2 cut(s) 96, 284
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 6 cut(s) 7, 122, 186, 314, 325, 492
HpyF10VI GCNNNNNNNGC 2 cut(s) 153, 192
HpyF3I CTNAG 4 cut(s) 19, 246, 424, 645
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 6 cut(s) 70, 155, 329, 466, 473, 521
HspAI GCGC 1 cut(s) 259
Kzo9I GATC 2 cut(s) 596, 684
LguI GCTCTTC 1 cut(s) 545
LmnI GCTCC 1 cut(s) 384
Lsp1109I GCAGC 2 cut(s) 298, 374
MaeI CTAG 1 cut(s) 443
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 3 cut(s) 404, 452, 559
MalI GATC 2 cut(s) 598, 686
MboI GATC 2 cut(s) 596, 684
MboII GAAGA 3 cut(s) 429, 532, 692
MluCI AATT 3 cut(s) 294, 576, 622
MlyI GAGTC 2 cut(s) 493, 518
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 7 cut(s) 18, 47, 93, 112, 136, 196, 253
MseI TTAA 2 cut(s) 107, 297
MslI CAYNNNNRTG 3 cut(s) 266, 324, 474
MspR9I CCNGG 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 122
MvaI CCWGG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 153, 192
NcoI CCATGG 3 cut(s) 151, 462, 517
NdeII GATC 2 cut(s) 596, 684
NlaIII CATG 6 cut(s) 70, 155, 329, 466, 473, 521
NmuCI GTSAC 1 cut(s) 452
PaqCI CACCTGC 1 cut(s) 330
PasI CCCWGGG 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 545
PctI GAATGC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 3 cut(s) 194, 313, 389
PleI GAGTC 2 cut(s) 492, 518
PmaCI CACGTG 1 cut(s) 413
PmlI CACGTG 1 cut(s) 413
PpsI GAGTC 2 cut(s) 492, 518
Ppu21I YACGTR 1 cut(s) 413
Psp6I CCWGG 1 cut(s) 225
PspCI CACGTG 1 cut(s) 413
PspEI GGTNACC 1 cut(s) 404
PspGI CCWGG 1 cut(s) 225
PspPI GGNCC 3 cut(s) 34, 80, 145
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
RseI CAYNNNNRTG 3 cut(s) 266, 324, 474
SapI GCTCTTC 1 cut(s) 545
SaqAI TTAA 2 cut(s) 107, 297
SatI GCNGC 3 cut(s) 193, 312, 388
Sau3AI GATC 2 cut(s) 596, 684
Sau96I GGNCC 3 cut(s) 34, 80, 145
ScaI AGTACT 1 cut(s) 305
SchI GAGTC 2 cut(s) 493, 518
ScrFI CCNGG 1 cut(s) 227
SinI GGWCC 1 cut(s) 34
SmiMI CAYNNNNRTG 3 cut(s) 266, 324, 474
Sse9I AATT 3 cut(s) 294, 576, 622
SsiI CCGC 4 cut(s) 93, 132, 190, 193
SspI AATATT 1 cut(s) 111
SspMI CTAG 1 cut(s) 443
StyD4I CCNGG 1 cut(s) 225
StyI CCWWGG 4 cut(s) 151, 462, 517, 530
TaiI ACGT 1 cut(s) 415
TasI AATT 3 cut(s) 294, 576, 622
TatI WGTACW 1 cut(s) 303
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 2 cut(s) 107, 297
Tru9I TTAA 2 cut(s) 107, 297
TscAI CASTG 2 cut(s) 27, 694
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 2 cut(s) 311, 387
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 7 cut(s) 169, 228, 284, 303, 458, 492, 532
TspRI CASTG 2 cut(s) 27, 694
VpaK11BI GGWCC 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
XspI CTAG 1 cut(s) 443
ZrmI AGTACT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.