Rh4DG291200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0015310
Physical Location & Seq
Reverse (-)
51243378 .. 51244631
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG291200.1

Sequence Viewer

Length: 693 bp
ATGGTGCAGAGATTCTTCTCGGTGAGGCAAACTGACCTCCAACAAAACCACCCTATTATGCTTCTCTCTGGTCCTCCTTCATGCGGAAAGACCTCTCTACTATTCCAGTTCGCATTCAACGAAGCCCACAACAGCAATGGACTTGTCATCTTTATTTGCAGCCGGCGCCGGTTAGAGGCAAAACCTCCTTATCTTTCCCAGGGCGTTGATTCATCCTGTGAGACTTTTCAGCTCATTAAAATGAAGTATGTGGATGATGATGAAGGAATTAAGAAGTTCTTTGCTGCATTCCATCTGTATGACGAATTTCCTGTGTCGGTTGTTATTGATGATTTTGGAGATTTCTTTGAGGAAAGGAGCTGCCAACAGAGATATGGGAACCCACGAGGAAGAGACTTGGCAATGGTGAGGACACTGGCTTTGTGTCACAATGCCGTGGTTCATGCAAATAAAACAAGGCCGTGCAAGCTTCTGTTATCAGATACACACCATGGAGACTCCCCTCGGTTGCTCTACATCTACAAACGATGGGTTTCGACCATCTTCAAAATTCAAGGTGAGGGCTCCGGATCATTTCTCCTAAAAGACTATAACCATTCAGGGAGTGGCAGCTCAAGGAAAAGAAAGACTGCCAAGTACTCCATAGCTCTCCAGTACCTTGTTTTGGAGGATATCGATGAAGATGGTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

230

Amino Acids

26.2

Weight (kDa)

8.48

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23255 AT3G23255
fragaria_vesca FvH4_4g22791 FvH4_4g22791
malus_domestica MD13G1129600.v1.1 MD16G1129800.v1.1
prunus_persica Prupe.1G216800_v2.0.a1
pyrus_communis pycom16g11000
rosa_chinensis RchiOBHm_Chr4g0429021
rosa_laevigata RLG00000007103
rosa_roxburghii Rroxscaffold_5G00370670
rosa_rugosa Rorug04G0232100
rosa_samantha Rh4BG294300 Rh4CG309800 Rh4DG291200
rosa_wichuraiana Rw4G024970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 165
AccIII TCCGGA 1 cut(s) 566
AciI CCGC 1 cut(s) 84
AclWI GGATC 1 cut(s) 577
AcsI RAATTY 2 cut(s) 305, 549
AcyI GRCGYC 1 cut(s) 166
AfaI GTAC 2 cut(s) 638, 656
AfiI CCNNNNNNNGG 3 cut(s) 83, 175, 664
AgsI TTSAA 3 cut(s) 118, 547, 554
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 5 cut(s) 232, 360, 469, 612, 647
AluI AGCT 5 cut(s) 232, 360, 469, 612, 647
Alw26I GTCTC 3 cut(s) 215, 387, 489
AlwI GGATC 1 cut(s) 577
Aor13HI TCCGGA 1 cut(s) 566
AoxI GGCC 1 cut(s) 458
ApeKI GCWGC 4 cut(s) 159, 284, 360, 609
ApoI RAATTY 2 cut(s) 305, 549
ArsI GACNNNNNNTTYG 2 cut(s) 403, 435
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 3 cut(s) 34, 418, 569
AvaII GGWCC 1 cut(s) 71
BanI GGYRCC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 566
BauI CACGAG 1 cut(s) 384
BbvI GCAGC 4 cut(s) 171, 271, 347, 621
BccI CCATC 4 cut(s) 300, 522, 548, 677
BceAI ACGGC 2 cut(s) 419, 445
BciT130I CCWGG 1 cut(s) 200
BcoDI GTCTC 3 cut(s) 215, 387, 489
BfoI RGCGCY 1 cut(s) 169
BisI GCNGC 4 cut(s) 160, 285, 361, 610
BlsI GCNGC 4 cut(s) 161, 286, 362, 611
BmcAI AGTACT 1 cut(s) 638
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 3 cut(s) 167, 380, 565
BmrFI CCNGG 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 635
BpuEI CTTGAG 1 cut(s) 598
Bsa29I ATCGAT 1 cut(s) 675
BsaHI GRCGYC 1 cut(s) 166
BsaJI CCNNGG 5 cut(s) 198, 199, 435, 490, 503
BsaWI WCCGGW 1 cut(s) 566
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 175, 664
Bse118I RCCGGY 2 cut(s) 162, 168
Bse1I ACTGG 3 cut(s) 106, 420, 652
Bse3DI GCAATG 2 cut(s) 142, 408
BseAI TCCGGA 1 cut(s) 566
BseBI CCWGG 1 cut(s) 200
BseCI ATCGAT 1 cut(s) 675
BseDI CCNNGG 5 cut(s) 198, 199, 435, 490, 503
BseGI GGATG 2 cut(s) 212, 259
BseLI CCNNNNNNNGG 3 cut(s) 83, 175, 664
BseMI GCAATG 2 cut(s) 142, 408
BseNI ACTGG 3 cut(s) 106, 420, 652
BseXI GCAGC 4 cut(s) 171, 271, 347, 621
BsgI GTGCAG 1 cut(s) 26
BshFI GGCC 1 cut(s) 460
BshNI GGYRCC 1 cut(s) 165
BshVI ATCGAT 1 cut(s) 675
BsiSI CCGG 3 cut(s) 163, 169, 567
BslI CCNNNNNNNGG 3 cut(s) 83, 175, 664
BsmAI GTCTC 3 cut(s) 215, 387, 489
BsmI GAATGC 2 cut(s) 113, 287
BsnI GGCC 1 cut(s) 460
Bsp1286I GDGCHC 1 cut(s) 566
Bsp13I TCCGGA 1 cut(s) 566
Bsp143I GATC 1 cut(s) 569
Bsp19I CCATGG 1 cut(s) 490
BspACI CCGC 1 cut(s) 84
BspANI GGCC 1 cut(s) 460
BspDI ATCGAT 1 cut(s) 675
BspEI TCCGGA 1 cut(s) 566
BspLI GGNNCC 3 cut(s) 167, 380, 565
BspPI GGATC 1 cut(s) 577
BspT107I GGYRCC 1 cut(s) 165
BsrDI GCAATG 2 cut(s) 142, 408
BsrFI RCCGGY 2 cut(s) 162, 168
BsrI ACTGG 3 cut(s) 106, 420, 652
BssAI RCCGGY 2 cut(s) 162, 168
BssECI CCNNGG 5 cut(s) 198, 199, 435, 490, 503
BssMI GATC 1 cut(s) 569
BssNI GRCGYC 1 cut(s) 166
BssSI CACGAG 1 cut(s) 384
BssT1I CCWWGG 1 cut(s) 490
Bst2BI CACGAG 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 200
Bst6I CTCTTC 1 cut(s) 385
BstACI GRCGYC 1 cut(s) 166
BstC8I GCNNGC 2 cut(s) 164, 467
BstDSI CCRYGG 2 cut(s) 435, 490
BstF5I GGATG 2 cut(s) 212, 259
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 1 cut(s) 572
BstMAI GTCTC 3 cut(s) 215, 387, 489
BstMBI GATC 1 cut(s) 569
BstMWI GCNNNNNNNGC 2 cut(s) 165, 466
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstV1I GCAGC 4 cut(s) 171, 271, 347, 621
Bsu15I ATCGAT 1 cut(s) 675
BsuRI GGCC 1 cut(s) 460
BsuTUI ATCGAT 1 cut(s) 675
BtgI CCRYGG 2 cut(s) 435, 490
BtsCI GGATG 2 cut(s) 212, 259
BtsIMutI CAGTG 1 cut(s) 413
Cac8I GCNNGC 2 cut(s) 164, 467
CfoI GCGC 1 cut(s) 168
Cfr10I RCCGGY 2 cut(s) 162, 168
Cfr13I GGNCC 1 cut(s) 71
ClaI ATCGAT 1 cut(s) 675
Csp6I GTAC 2 cut(s) 637, 655
CviAII CATG 3 cut(s) 81, 443, 491
CviQI GTAC 2 cut(s) 637, 655
DinI GGCGCC 1 cut(s) 167
DpnI GATC 1 cut(s) 571
DpnII GATC 1 cut(s) 569
Eam1104I CTCTTC 1 cut(s) 385
EarI CTCTTC 1 cut(s) 385
Eco130I CCWWGG 1 cut(s) 490
Eco24I GRGCYC 1 cut(s) 566
Eco32I GATATC 1 cut(s) 673
Eco47I GGWCC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 198
EcoRV GATATC 1 cut(s) 673
EcoT14I CCWWGG 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 566
EgeI GGCGCC 1 cut(s) 167
EheI GGCGCC 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 490
FaeI CATG 3 cut(s) 84, 446, 494
FaiI YATR 9 cut(s) 59, 82, 249, 300, 375, 444, 492, 591, 644
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FatI CATG 3 cut(s) 80, 442, 490
Fnu4HI GCNGC 4 cut(s) 160, 285, 361, 610
FokI GGATG 2 cut(s) 199, 266
FriOI GRGCYC 1 cut(s) 566
Fsp4HI GCNGC 4 cut(s) 160, 285, 361, 610
GlaI GCGC 1 cut(s) 167
GluI GCNGC 4 cut(s) 160, 285, 361, 610
GsuI CTGGAG 1 cut(s) 635
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 1 cut(s) 460
HapII CCGG 3 cut(s) 163, 169, 567
HhaI GCGC 1 cut(s) 168
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 3 cut(s) 84, 446, 494
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 3 cut(s) 12, 209, 497
HpaII CCGG 3 cut(s) 163, 169, 567
HphI GGTGA 3 cut(s) 34, 418, 569
Hpy188I TCNGA 1 cut(s) 481
Hpy188III TCNNGA 1 cut(s) 567
HpyAV CCTTC 2 cut(s) 87, 257
HpyCH4V TGCA 5 cut(s) 7, 159, 287, 446, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 466
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 3 cut(s) 84, 446, 494
HspAI GCGC 1 cut(s) 166
KasI GGCGCC 1 cut(s) 165
Kpn2I TCCGGA 1 cut(s) 566
KroI GCCGGC 1 cut(s) 162
KroNI GCCGGC 1 cut(s) 164
Kzo9I GATC 1 cut(s) 569
LmnI GCTCC 2 cut(s) 357, 569
Lsp1109I GCAGC 4 cut(s) 171, 271, 347, 621
MaeIII GTNAC 1 cut(s) 425
MalI GATC 1 cut(s) 571
MboI GATC 1 cut(s) 569
MboII GAAGA 4 cut(s) 7, 402, 535, 692
MhlI GDGCHC 1 cut(s) 566
MluCI AATT 3 cut(s) 267, 305, 549
Mly113I GGCGCC 1 cut(s) 166
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 1 cut(s) 64
MroI TCCGGA 1 cut(s) 566
MroNI GCCGGC 1 cut(s) 162
MseI TTAA 2 cut(s) 237, 270
MslI CAYNNNNRTG 2 cut(s) 239, 297
MspI CCGG 3 cut(s) 163, 169, 567
MspR9I CCNGG 1 cut(s) 200
Mva1269I GAATGC 2 cut(s) 113, 287
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 165, 466
NaeI GCCGGC 1 cut(s) 164
NarI GGCGCC 1 cut(s) 166
NcoI CCATGG 1 cut(s) 490
NdeII GATC 1 cut(s) 569
NgoMIV GCCGGC 1 cut(s) 162
NlaIII CATG 3 cut(s) 84, 446, 494
NlaIV GGNNCC 3 cut(s) 167, 380, 565
NmuCI GTSAC 1 cut(s) 425
PasI CCCWGGG 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PctI GAATGC 2 cut(s) 113, 287
PdiI GCCGGC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 12, 209
PkrI GCNGC 4 cut(s) 161, 286, 362, 611
PleI GAGTC 1 cut(s) 491
PluTI GGCGCC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 491
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 3 cut(s) 167, 380, 565
PspPI GGNCC 1 cut(s) 71
RsaI GTAC 2 cut(s) 638, 656
RsaNI GTAC 2 cut(s) 637, 655
RseI CAYNNNNRTG 2 cut(s) 239, 297
SaqAI TTAA 2 cut(s) 237, 270
SatI GCNGC 4 cut(s) 160, 285, 361, 610
Sau3AI GATC 1 cut(s) 569
Sau96I GGNCC 1 cut(s) 71
ScaI AGTACT 1 cut(s) 638
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 1 cut(s) 566
SfoI GGCGCC 1 cut(s) 167
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 2 cut(s) 239, 297
SmlI CTYRAG 1 cut(s) 613
SmoI CTYRAG 1 cut(s) 613
Sse9I AATT 3 cut(s) 267, 305, 549
SsiI CCGC 1 cut(s) 84
SspDI GGCGCC 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 490
TaqI TCGA 2 cut(s) 536, 675
TasI AATT 3 cut(s) 267, 305, 549
TatI WGTACW 1 cut(s) 636
TfiI GAWTC 2 cut(s) 12, 209
Tru1I TTAA 2 cut(s) 237, 270
Tru9I TTAA 2 cut(s) 237, 270
TscAI CASTG 1 cut(s) 420
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 4 cut(s) 159, 284, 360, 609
Tsp45I GTSAC 1 cut(s) 425
TspDTI ATGAA 6 cut(s) 69, 201, 257, 276, 431, 693
TspRI CASTG 1 cut(s) 420
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 2 cut(s) 305, 549
XcmI CCANNNNNNNNNTGG 3 cut(s) 134, 371, 602
ZrmI AGTACT 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.