FvH4_4g22791

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015310
Physical Location & Seq
Reverse (-)
25484545 .. 25486368
1824 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g22791.t1

Sequence Viewer

Length: 702 bp
ATGGTGCAGAGATTCTTCTCAGTTAGGCAAATTGACATCCAACAAAACCACCCAACCAACCCTATTATGCTTCTCTCTGGTCCTCCTTCATGTGGAAAAACATCATTACTGTTCCAGTTCGCATTCAACGAAGCCCACAATAACAATGGACCAGTCATCTTTATCTGCAGCCGGCGCCGGTTAGAGGCAAAACCTCCTTATCTTTCCCAGGGCGTTGATTCGTCCTGTGAGACCTTTCAGCGCGTAAAAATGAAGTATGTGGATGATGATGAAGGGATTAAGAAGTTCTTTGCTGCATTCCACCTGTATGATGAATTTCCTGTGTCGGTTGTTATTGATGATTTTGGAGATTTCTTTGAGGAAAGGAGCTGCCAACAGAGATATGGCAATCCAAGGGGAAAAGACATGGCAATGGTGAGGACACTAGCTTTGTGTCACAATGCCATGGTTCATGCAAATGAAACAAGGCCTTGCAAGCTTCTGTTATCAGATACACACCATGGAGACTCCCCACGGTTGCTGTTCATCTACAAACGGTGGGTTTCGACCATTTTCACGATTCAAGGTGATGGCTGTGGATCGTTTCTTCTAAAGGACTATAACCATTCAGCAAGTGGCAGCTCAAGGAAAAGAAAGACTGCCAAGTACTCCATAGCTCTCCAGAACCTGGTTTTGGAGAAGATTGATGAAGATGGTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

234

Amino Acids

26.53

Weight (kDa)

8.44

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23255 AT3G23255
fragaria_vesca FvH4_4g22791 FvH4_4g22791
malus_domestica MD13G1129600.v1.1 MD16G1129800.v1.1
prunus_persica Prupe.1G216800_v2.0.a1
pyrus_communis pycom16g11000
rosa_chinensis RchiOBHm_Chr4g0429021
rosa_laevigata RLG00000007103
rosa_roxburghii Rroxscaffold_5G00370670
rosa_rugosa Rorug04G0232100
rosa_samantha Rh4BG294300 Rh4CG309800 Rh4DG291200
rosa_wichuraiana Rw4G024970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 174
AccB7I CCANNNNNTGG 1 cut(s) 667
AccII CGCG 1 cut(s) 243
AclWI GGATC 1 cut(s) 586
AcsI RAATTY 1 cut(s) 314
AcyI GRCGYC 1 cut(s) 175
AfaI GTAC 1 cut(s) 647
AfiI CCNNNNNNNGG 4 cut(s) 92, 184, 667, 673
AgsI TTSAA 2 cut(s) 127, 563
AjnI CCWGG 2 cut(s) 207, 666
AjuI GAANNNNNNNTTGG 2 cut(s) 656, 688
AluBI AGCT 5 cut(s) 369, 428, 478, 621, 656
AluI AGCT 5 cut(s) 369, 428, 478, 621, 656
Alw26I GTCTC 2 cut(s) 224, 498
AlwI GGATC 1 cut(s) 586
AlwNI CAGNNNCTG 1 cut(s) 667
AoxI GGCC 1 cut(s) 467
ApeKI GCWGC 4 cut(s) 168, 293, 369, 618
ApoI RAATTY 1 cut(s) 314
ArsI GACNNNNNNTTYG 2 cut(s) 412, 444
AspLEI GCGC 2 cut(s) 177, 243
AspS9I GGNCC 2 cut(s) 80, 149
AsuHPI GGTGA 2 cut(s) 427, 578
AvaII GGWCC 2 cut(s) 80, 149
BanI GGYRCC 1 cut(s) 174
BbvI GCAGC 4 cut(s) 180, 280, 356, 630
BccI CCATC 2 cut(s) 563, 686
BciT130I CCWGG 2 cut(s) 209, 668
BcoDI GTCTC 2 cut(s) 224, 498
BfaI CTAG 1 cut(s) 425
BfmI CTRYAG 1 cut(s) 166
BfoI RGCGCY 1 cut(s) 178
BisI GCNGC 4 cut(s) 169, 294, 370, 619
BlsI GCNGC 4 cut(s) 170, 295, 371, 620
BmcAI AGTACT 1 cut(s) 647
Bme1390I CCNGG 2 cut(s) 209, 668
Bme18I GGWCC 2 cut(s) 80, 149
BmgT120I GGNCC 2 cut(s) 80, 149
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 2 cut(s) 209, 668
BpmI CTGGAG 1 cut(s) 644
BpuEI CTTGAG 1 cut(s) 607
BsaHI GRCGYC 1 cut(s) 175
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 6 cut(s) 207, 208, 392, 444, 499, 512
Bsc4I CCNNNNNNNGG 4 cut(s) 92, 184, 667, 673
Bse118I RCCGGY 2 cut(s) 171, 177
Bse1I ACTGG 2 cut(s) 115, 152
Bse3DI GCAATG 1 cut(s) 417
BseBI CCWGG 2 cut(s) 209, 668
BseDI CCNNGG 6 cut(s) 207, 208, 392, 444, 499, 512
BseGI GGATG 2 cut(s) 36, 268
BseLI CCNNNNNNNGG 4 cut(s) 92, 184, 667, 673
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 2 cut(s) 115, 152
BseXI GCAGC 4 cut(s) 180, 280, 356, 630
BsgI GTGCAG 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 243
BshFI GGCC 1 cut(s) 469
BshNI GGYRCC 1 cut(s) 174
BsiSI CCGG 2 cut(s) 172, 178
BslI CCNNNNNNNGG 4 cut(s) 92, 184, 667, 673
BsmAI GTCTC 2 cut(s) 224, 498
BsmI GAATGC 2 cut(s) 122, 296
BsnI GGCC 1 cut(s) 469
Bso31I GGTCTC 1 cut(s) 224
Bsp143I GATC 1 cut(s) 578
Bsp19I CCATGG 2 cut(s) 444, 499
BspANI GGCC 1 cut(s) 469
BspCNI CTCAG 1 cut(s) 32
BspFNI CGCG 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 176
BspMAI CTGCAG 1 cut(s) 170
BspPI GGATC 1 cut(s) 586
BspT107I GGYRCC 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 417
BsrFI RCCGGY 2 cut(s) 171, 177
BsrI ACTGG 2 cut(s) 115, 152
BssAI RCCGGY 2 cut(s) 171, 177
BssECI CCNNGG 6 cut(s) 207, 208, 392, 444, 499, 512
BssMI GATC 1 cut(s) 578
BssNI GRCGYC 1 cut(s) 175
BssT1I CCWWGG 3 cut(s) 392, 444, 499
Bst2UI CCWGG 2 cut(s) 209, 668
Bst4CI ACNGT 3 cut(s) 111, 516, 537
BstACI GRCGYC 1 cut(s) 175
BstC8I GCNNGC 2 cut(s) 173, 476
BstDEI CTNAG 1 cut(s) 19
BstDSI CCRYGG 3 cut(s) 444, 499, 512
BstF5I GGATG 2 cut(s) 36, 268
BstFNI CGCG 1 cut(s) 243
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 2 cut(s) 177, 243
BstKTI GATC 1 cut(s) 581
BstMAI GTCTC 2 cut(s) 224, 498
BstMBI GATC 1 cut(s) 578
BstMWI GCNNNNNNNGC 2 cut(s) 174, 475
BstNI CCWGG 2 cut(s) 209, 668
BstSCI CCNGG 2 cut(s) 207, 666
BstSFI CTRYAG 1 cut(s) 166
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 4 cut(s) 180, 280, 356, 630
BsuRI GGCC 1 cut(s) 469
BtgI CCRYGG 3 cut(s) 444, 499, 512
BtsCI GGATG 2 cut(s) 36, 268
Cac8I GCNNGC 2 cut(s) 173, 476
CaiI CAGNNNCTG 1 cut(s) 667
CfoI GCGC 2 cut(s) 177, 243
Cfr10I RCCGGY 2 cut(s) 171, 177
Cfr13I GGNCC 2 cut(s) 80, 149
CsiI ACCWGGT 1 cut(s) 666
Csp6I GTAC 1 cut(s) 646
CviAII CATG 5 cut(s) 90, 406, 445, 452, 500
CviJI RGCY 9 cut(s) 134, 171, 369, 428, 469, 478, 573, 621, 656
CviKI_1 RGCY 9 cut(s) 134, 171, 369, 428, 469, 478, 573, 621, 656
CviQI GTAC 1 cut(s) 646
DdeI CTNAG 1 cut(s) 19
DinI GGCGCC 1 cut(s) 176
DpnI GATC 1 cut(s) 580
DpnII GATC 1 cut(s) 578
Eco130I CCWWGG 3 cut(s) 392, 444, 499
Eco147I AGGCCT 1 cut(s) 469
Eco31I GGTCTC 1 cut(s) 224
Eco47I GGWCC 2 cut(s) 80, 149
EcoRII CCWGG 2 cut(s) 207, 666
EcoT14I CCWWGG 3 cut(s) 392, 444, 499
EgeI GGCGCC 1 cut(s) 176
EheI GGCGCC 1 cut(s) 176
ErhI CCWWGG 3 cut(s) 392, 444, 499
FaeI CATG 5 cut(s) 93, 409, 448, 455, 503
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 5 cut(s) 89, 405, 444, 451, 499
Fnu4HI GCNGC 4 cut(s) 169, 294, 370, 619
FokI GGATG 2 cut(s) 23, 275
Fsp4HI GCNGC 4 cut(s) 169, 294, 370, 619
FspBI CTAG 1 cut(s) 425
GlaI GCGC 2 cut(s) 176, 242
GluI GCNGC 4 cut(s) 169, 294, 370, 619
GsuI CTGGAG 1 cut(s) 644
HaeII RGCGCY 1 cut(s) 178
HaeIII GGCC 1 cut(s) 469
HapII CCGG 2 cut(s) 172, 178
HhaI GCGC 2 cut(s) 177, 243
Hin1I GRCGYC 1 cut(s) 175
Hin1II CATG 5 cut(s) 93, 409, 448, 455, 503
Hin6I GCGC 2 cut(s) 175, 241
HinP1I GCGC 2 cut(s) 175, 241
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 4 cut(s) 12, 218, 506, 559
HpaII CCGG 2 cut(s) 172, 178
HphI GGTGA 2 cut(s) 427, 578
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 2 cut(s) 556, 661
HpyAV CCTTC 2 cut(s) 96, 266
HpyCH4III ACNGT 3 cut(s) 111, 516, 537
HpyCH4V TGCA 5 cut(s) 7, 168, 296, 455, 474
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 475
HpyF3I CTNAG 1 cut(s) 19
Hsp92I GRCGYC 1 cut(s) 175
Hsp92II CATG 5 cut(s) 93, 409, 448, 455, 503
HspAI GCGC 2 cut(s) 175, 241
KasI GGCGCC 1 cut(s) 174
KroI GCCGGC 1 cut(s) 171
KroNI GCCGGC 1 cut(s) 173
Kzo9I GATC 1 cut(s) 578
LmnI GCTCC 1 cut(s) 366
Lsp1109I GCAGC 4 cut(s) 180, 280, 356, 630
MabI ACCWGGT 1 cut(s) 666
MaeI CTAG 1 cut(s) 425
MaeIII GTNAC 1 cut(s) 434
MalI GATC 1 cut(s) 580
MboI GATC 1 cut(s) 578
MboII GAAGA 4 cut(s) 7, 578, 691, 701
MluCI AATT 2 cut(s) 30, 314
Mly113I GGCGCC 1 cut(s) 175
MlyI GAGTC 1 cut(s) 500
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 5 cut(s) 93, 178, 204, 352, 411
MroNI GCCGGC 1 cut(s) 171
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 3 cut(s) 306, 410, 456
MspI CCGG 2 cut(s) 172, 178
MspR9I CCNGG 2 cut(s) 209, 668
Mva1269I GAATGC 2 cut(s) 122, 296
MvaI CCWGG 2 cut(s) 209, 668
MvnI CGCG 1 cut(s) 243
MwoI GCNNNNNNNGC 2 cut(s) 174, 475
NaeI GCCGGC 1 cut(s) 173
NarI GGCGCC 1 cut(s) 175
NcoI CCATGG 2 cut(s) 444, 499
NdeII GATC 1 cut(s) 578
NgoMIV GCCGGC 1 cut(s) 171
NlaIII CATG 5 cut(s) 93, 409, 448, 455, 503
NlaIV GGNNCC 1 cut(s) 176
NmuCI GTSAC 1 cut(s) 434
PasI CCCWGGG 1 cut(s) 208
PceI AGGCCT 1 cut(s) 469
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PctI GAATGC 2 cut(s) 122, 296
PdiI GCCGGC 1 cut(s) 173
PfeI GAWTC 3 cut(s) 12, 218, 559
PflMI CCANNNNNTGG 1 cut(s) 667
PkrI GCNGC 4 cut(s) 170, 295, 371, 620
PleI GAGTC 1 cut(s) 500
PluTI GGCGCC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 500
Psp6I CCWGG 2 cut(s) 207, 666
PspGI CCWGG 2 cut(s) 207, 666
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 2 cut(s) 80, 149
PstI CTGCAG 1 cut(s) 170
PstNI CAGNNNCTG 1 cut(s) 667
RsaI GTAC 1 cut(s) 647
RsaNI GTAC 1 cut(s) 646
RseI CAYNNNNRTG 3 cut(s) 306, 410, 456
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 4 cut(s) 169, 294, 370, 619
Sau3AI GATC 1 cut(s) 578
Sau96I GGNCC 2 cut(s) 80, 149
ScaI AGTACT 1 cut(s) 647
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 2 cut(s) 209, 668
SexAI ACCWGGT 1 cut(s) 666
SfcI CTRYAG 1 cut(s) 166
SfoI GGCGCC 1 cut(s) 176
SinI GGWCC 2 cut(s) 80, 149
SmiMI CAYNNNNRTG 3 cut(s) 306, 410, 456
SmlI CTYRAG 1 cut(s) 622
SmoI CTYRAG 1 cut(s) 622
Sse9I AATT 2 cut(s) 30, 314
SseBI AGGCCT 1 cut(s) 469
SspDI GGCGCC 1 cut(s) 174
SspMI CTAG 1 cut(s) 425
StuI AGGCCT 1 cut(s) 469
StyD4I CCNGG 2 cut(s) 207, 666
StyI CCWWGG 3 cut(s) 392, 444, 499
TaaI ACNGT 3 cut(s) 111, 516, 537
TaqI TCGA 1 cut(s) 545
TasI AATT 2 cut(s) 30, 314
TatI WGTACW 1 cut(s) 645
TfiI GAWTC 3 cut(s) 12, 218, 559
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 4 cut(s) 168, 293, 369, 618
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 8 cut(s) 78, 266, 285, 327, 440, 474, 514, 702
Van91I CCANNNNNTGG 1 cut(s) 667
VpaK11BI GGWCC 2 cut(s) 80, 149
XapI RAATTY 1 cut(s) 314
XcmI CCANNNNNNNNNTGG 3 cut(s) 143, 380, 611
XspI CTAG 1 cut(s) 425
ZrmI AGTACT 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.