AT3G25620

ABC transporter G family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012241
Physical Location & Seq
Reverse (-)
9316074 .. 9319660
3587 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G25620.2

Sequence Viewer

Length: 1404 bp
ATGATGCCTCCTAATGAGCAAGAATCTAGCTTTCCGAAAACACCGAGCGCAAACCGACACGAAACTAGTCCGGTTCAAGAAAACCGGTTTAGCTCTCCAAGTCATGTAAACCCATGCCTTGACGACGATAACGACCACGACGGTCCGAGTCACCAATCAAGACAATCTTCTGTTCTACGTCAATCTTTACGTCCTATAATCCTCAAGTTTGAGGAGTTGACGTACAGTATCAAATCACAAACCGGGAAAGGAAGCTATTGGTTCGGTTCACAAGAACCAAAACCGAACCGGTTAGTCCTCAAATGTGTAAGTGGTATAGTCAAACCAGGGGAGTTACTAGCAATGCTTGGTCCATCAGGGAGTGGCAAAACAACGCTAGTAACGGCGCTAGCCGGCCGTTTACAAGGGAAGTTATCAGGAACCGTTAGCTATAACGGAGAGCCGTTTACAAGCTCAGTTAAACGGAAAACGGGGTTCGTTACACAAGACGATGTTCTCTACCCACACTTAACGGTCATGGAGACGCTAACGTACACGGCTTTGCTCCGTTTACCAAAAGAGTTGACCCGGAAAGAGAAACTAGAGCAGGTGGAGATGGTGGTTTCGGATCTTGGGTTGACCCGGTGTTGTAACAGTGTTATCGGAGGCGGGTTGATCCGAGGAATTTCGGGTGGGGAAAGGAAACGGGTAAGTATTGGACAAGAAATGCTAGTGAATCCGAGTTTGTTGCTTCTTGATGAGCCAACGTCGGGGCTTGATTCTACCACGGCGGCTCGTATAGTCGCCACCTTGAGATCGCTAGCACGTGGTGGTCGGACGGTGGTGACGACGATTCATCAGCCGTCGAGTAGGCTTTATCGGATGTTCGATAAAGTGTTGGTTTTATCGGAAGGGTGTCCTATTTATAGTGGAGATTCGGGTCGGGTCATGGAATATTTTGGTTCGATTGGGTATCAACCCGGATCCAGTTTCGTTAACCCGGCTGATTTCGTGCTTGATCTTGCTAACGGAATTACTTCGGATACAAAACAATATGATCAAATCGAAACTAATGGAAGATTAGATCGGCTTGAAGAACAAAACTCAGTGAAACAATCGTTAATATCGTCATACAAAAAGAATTTGTATCCACCTTTGAAAGAAGAAGTGTCTAGAACGTTTCCACAAGATCAAACGAACGCTAGATTGAGAAAAAAGGCAATAACAAATCGATGGCCAACGAGTTGGTGGATGCAATTCTCAGTTCTACTGAAACGAGGTTTAAAAGAGAGAAGTCACGAATCATTTTCAGGACTCAGAATATTTATGGTCATGTCAGTTTCTTTACTTTCAGGCCTCTTGTGGTGGCATTCTCGCGTTGCTCATTTACAAGATCAGGTAAAACAAAATAAACCATGGTATTAA

Protein Analysis

467

Amino Acids

52.13

Weight (kDa)

9.42

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 101 - 250 3.9e-27 ABC transporter
ABC2_membrane_7 PF19055 279 - 345 9.1e-09 ABC-2 type transporter
ABC2_membrane_7 PF19055 358 - 609 6e-09 ABC-2 type transporter
ABC2_membrane PF01061 412 - 617 3.9e-42 ABC-2 type transporter
ABC2_membrane_3 PF12698 462 - 667 1.4e-06 ABC-2 family transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012241)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25620 AT3G25620
fragaria_vesca FvH4_4g28360 FvH4_4g28360
malus_domestica MD13G1049400.v1.1 MD16G1050400.v1.1
prunus_persica Prupe.1G302500_v2.0.a1
pyrus_communis pycom13g04360 pycom16g04430
rosa_chinensis RchiOBHm_Chr4g0436231
rosa_laevigata RLG00000006527
rosa_multiflora Rmu_sc0007205.1_g000016
rosa_roxburghii Rroxscaffold_5G00377420
rosa_rugosa Rorug04G0292700
rosa_samantha Rh4AG346900 Rh4BG355900 Rh4CG370500 Rh4DG349600
rosa_wichuraiana Rw4G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 577
Acc36I ACCTGC 1 cut(s) 577
AccII CGCG 1 cut(s) 1356
AciI CCGC 2 cut(s) 648, 770
AclI AACGTT 1 cut(s) 1157
AclWI GGATC 4 cut(s) 615, 649, 957, 970
AcoI YGGCCR 2 cut(s) 394, 1214
AcsI RAATTY 2 cut(s) 663, 1120
AcvI CACGTG 1 cut(s) 806
AdeI CACNNNGTG 1 cut(s) 809
AfaI GTAC 2 cut(s) 224, 533
AfiI CCNNNNNNNGG 1 cut(s) 749
AgeI ACCGGT 2 cut(s) 84, 288
AgsI TTSAA 3 cut(s) 77, 1073, 1138
AhlI ACTAGT 1 cut(s) 65
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 5 cut(s) 30, 93, 255, 429, 453
AluI AGCT 5 cut(s) 30, 93, 255, 429, 453
Alw26I GTCTC 1 cut(s) 515
AlwI GGATC 4 cut(s) 615, 649, 957, 970
AoxI GGCC 3 cut(s) 394, 1214, 1333
ApoI RAATTY 2 cut(s) 663, 1120
AsiGI ACCGGT 2 cut(s) 84, 288
Asp700I GAANNNNTTC 1 cut(s) 1015
AspLEI GCGC 2 cut(s) 50, 388
AspS9I GGNCC 2 cut(s) 143, 350
AsuC2I CCSGG 5 cut(s) 244, 568, 622, 960, 980
AsuHPI GGTGA 2 cut(s) 143, 835
AsuNHI GCTAGC 2 cut(s) 388, 799
AvaII GGWCC 2 cut(s) 143, 350
BalI TGGCCA 1 cut(s) 1216
BamHI GGATCC 1 cut(s) 962
BbrPI CACGTG 1 cut(s) 806
BccI CCATC 3 cut(s) 361, 589, 1206
BceAI ACGGC 6 cut(s) 381, 399, 427, 552, 783, 826
BcgI CGANNNNNNTGC 2 cut(s) 709, 743
BciT130I CCWGG 1 cut(s) 327
BciVI GTATCC 2 cut(s) 1015, 1137
BclI TGATCA 1 cut(s) 1036
BcnI CCSGG 5 cut(s) 244, 568, 622, 960, 980
BcoDI GTCTC 1 cut(s) 515
BcuI ACTAGT 1 cut(s) 65
BfoI RGCGCY 1 cut(s) 389
BfuAI ACCTGC 1 cut(s) 577
BfuI GTATCC 2 cut(s) 1015, 1137
BisI GCNGC 1 cut(s) 771
BlsI GCNGC 1 cut(s) 772
Bme1390I CCNGG 6 cut(s) 244, 327, 568, 622, 960, 980
Bme18I GGWCC 2 cut(s) 143, 350
BmgT120I GGNCC 2 cut(s) 143, 350
BmiI GGNNCC 2 cut(s) 421, 964
BmrFI CCNGG 6 cut(s) 244, 327, 568, 622, 960, 980
BmsI GCATC 1 cut(s) 1221
BmtI GCTAGC 2 cut(s) 392, 803
BpuEI CTTGAG 2 cut(s) 188, 811
BpuMI CCSGG 5 cut(s) 244, 568, 622, 960, 980
Bsa29I ATCGAT 1 cut(s) 1210
BsaAI YACGTR 1 cut(s) 806
BsaJI CCNNGG 4 cut(s) 326, 658, 765, 1394
BsaWI WCCGGW 3 cut(s) 70, 84, 288
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 1 cut(s) 749
Bse118I RCCGGY 3 cut(s) 84, 288, 392
Bse1I ACTGG 1 cut(s) 966
Bse3DI GCAATG 1 cut(s) 348
BseBI CCWGG 1 cut(s) 327
BseCI ATCGAT 1 cut(s) 1210
BseDI CCNNGG 4 cut(s) 326, 658, 765, 1394
BseGI GGATG 2 cut(s) 867, 1236
BseLI CCNNNNNNNGG 1 cut(s) 749
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 4 cut(s) 468, 1098, 1254, 1309
BseNI ACTGG 1 cut(s) 966
BseRI GAGGAG 1 cut(s) 227
BseX3I CGGCCG 1 cut(s) 394
Bsh1236I CGCG 1 cut(s) 1356
Bsh1285I CGRYCG 1 cut(s) 397
BshFI GGCC 3 cut(s) 396, 1216, 1335
BshTI ACCGGT 2 cut(s) 84, 288
BshVI ATCGAT 1 cut(s) 1210
BsiEI CGRYCG 1 cut(s) 397
BsiSI CCGG 9 cut(s) 71, 85, 243, 289, 393, 568, 622, 960, 980
BslI CCNNNNNNNGG 1 cut(s) 749
BsmAI GTCTC 1 cut(s) 515
BsmBI CGTCTC 1 cut(s) 515
BsmI GAATGC 1 cut(s) 1348
BsnI GGCC 3 cut(s) 396, 1216, 1335
Bsp143I GATC 9 cut(s) 607, 654, 794, 962, 997, 1036, 1063, 1168, 1372
Bsp19I CCATGG 1 cut(s) 1394
BspACI CCGC 2 cut(s) 648, 770
BspANI GGCC 3 cut(s) 396, 1216, 1335
BspCNI CTCAG 4 cut(s) 467, 1097, 1253, 1308
BspDI ATCGAT 1 cut(s) 1210
BspFNI CGCG 1 cut(s) 1356
BspLI GGNNCC 2 cut(s) 421, 964
BspMI ACCTGC 1 cut(s) 577
BspOI GCTAGC 2 cut(s) 392, 803
BspPI GGATC 4 cut(s) 615, 649, 957, 970
BsrDI GCAATG 1 cut(s) 348
BsrFI RCCGGY 3 cut(s) 84, 288, 392
BsrI ACTGG 1 cut(s) 966
BssAI RCCGGY 3 cut(s) 84, 288, 392
BssECI CCNNGG 4 cut(s) 326, 658, 765, 1394
BssMI GATC 9 cut(s) 607, 654, 794, 962, 997, 1036, 1063, 1168, 1372
BssT1I CCWWGG 1 cut(s) 1394
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 6 cut(s) 143, 227, 424, 514, 635, 820
BstBAI YACGTR 1 cut(s) 806
BstC8I GCNNGC 3 cut(s) 390, 394, 801
BstDEI CTNAG 4 cut(s) 454, 1084, 1240, 1295
BstDSI CCRYGG 2 cut(s) 765, 1394
BstF5I GGATG 2 cut(s) 867, 1236
BstFNI CGCG 1 cut(s) 1356
BstH2I RGCGCY 1 cut(s) 389
BstHHI GCGC 2 cut(s) 50, 388
BstKTI GATC 9 cut(s) 610, 657, 797, 965, 1000, 1039, 1066, 1171, 1375
BstMAI GTCTC 1 cut(s) 515
BstMBI GATC 9 cut(s) 607, 654, 794, 962, 997, 1036, 1063, 1168, 1372
BstMCI CGRYCG 1 cut(s) 397
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 6 cut(s) 242, 325, 566, 620, 958, 978
BstUI CGCG 1 cut(s) 1356
BstX2I RGATCY 2 cut(s) 607, 962
BstXI CCANNNNNNTGG 1 cut(s) 1224
BstYI RGATCY 2 cut(s) 607, 962
BstZI CGGCCG 1 cut(s) 394
Bsu15I ATCGAT 1 cut(s) 1210
BsuI GTATCC 2 cut(s) 1015, 1137
BsuRI GGCC 3 cut(s) 396, 1216, 1335
BsuTUI ATCGAT 1 cut(s) 1210
BtgI CCRYGG 2 cut(s) 765, 1394
BtsCI GGATG 2 cut(s) 867, 1236
BtsIMutI CAGTG 2 cut(s) 640, 1092
BveI ACCTGC 1 cut(s) 577
Cac8I GCNNGC 3 cut(s) 390, 394, 801
CfoI GCGC 2 cut(s) 50, 388
Cfr10I RCCGGY 3 cut(s) 84, 288, 392
Cfr13I GGNCC 2 cut(s) 143, 350
ClaI ATCGAT 1 cut(s) 1210
CpoI CGGWCCG 1 cut(s) 143
CseI GACGC 1 cut(s) 532
Csp6I GTAC 2 cut(s) 223, 532
CspAI ACCGGT 2 cut(s) 84, 288
CspI CGGWCCG 1 cut(s) 143
CviAII CATG 6 cut(s) 104, 114, 517, 928, 1312, 1395
CviQI GTAC 2 cut(s) 223, 532
DdeI CTNAG 4 cut(s) 454, 1084, 1240, 1295
DpnI GATC 9 cut(s) 609, 656, 796, 964, 999, 1038, 1065, 1170, 1374
DpnII GATC 9 cut(s) 607, 654, 794, 962, 997, 1036, 1063, 1168, 1372
DraI TTTAAA 1 cut(s) 1263
DraIII CACNNNGTG 1 cut(s) 809
EaeI YGGCCR 2 cut(s) 394, 1214
EagI CGGCCG 1 cut(s) 394
EclXI CGGCCG 1 cut(s) 394
Eco130I CCWWGG 1 cut(s) 1394
Eco147I AGGCCT 1 cut(s) 1335
Eco47I GGWCC 2 cut(s) 143, 350
Eco52I CGGCCG 1 cut(s) 394
Eco72I CACGTG 1 cut(s) 806
EcoRII CCWGG 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 1394
ErhI CCWWGG 1 cut(s) 1394
Esp3I CGTCTC 1 cut(s) 515
FaeI CATG 6 cut(s) 107, 117, 520, 931, 1315, 1398
FalI AAGNNNNNCTT 2 cut(s) 151, 183
FatI CATG 6 cut(s) 103, 113, 516, 927, 1311, 1394
FauI CCCGC 1 cut(s) 641
FbaI TGATCA 1 cut(s) 1036
Fnu4HI GCNGC 1 cut(s) 771
FokI GGATG 2 cut(s) 874, 1243
Fsp4HI GCNGC 1 cut(s) 771
GlaI GCGC 2 cut(s) 49, 387
GluI GCNGC 1 cut(s) 771
HaeII RGCGCY 1 cut(s) 389
HaeIII GGCC 3 cut(s) 396, 1216, 1335
HapII CCGG 9 cut(s) 71, 85, 243, 289, 393, 568, 622, 960, 980
HgaI GACGC 1 cut(s) 532
HhaI GCGC 2 cut(s) 50, 388
Hin1II CATG 6 cut(s) 107, 117, 520, 931, 1315, 1398
Hin6I GCGC 2 cut(s) 48, 386
HinP1I GCGC 2 cut(s) 48, 386
HincII GTYRAC 4 cut(s) 219, 564, 618, 976
HindII GTYRAC 4 cut(s) 219, 564, 618, 976
HinfI GANTC 8 cut(s) 23, 148, 715, 758, 832, 914, 1280, 1293
HpaI GTTAAC 1 cut(s) 976
HpaII CCGG 9 cut(s) 71, 85, 243, 289, 393, 568, 622, 960, 980
HphI GGTGA 2 cut(s) 143, 835
Hpy188III TCNNGA 7 cut(s) 77, 159, 417, 734, 1152, 1277, 1290
Hpy99I CGWCG 5 cut(s) 128, 143, 751, 832, 847
HpyAV CCTTC 1 cut(s) 884
HpyCH4III ACNGT 6 cut(s) 143, 227, 424, 514, 635, 820
HpyCH4IV ACGT 7 cut(s) 178, 190, 221, 530, 746, 805, 1157
HpyCH4V TGCA 1 cut(s) 1234
HpyF3I CTNAG 4 cut(s) 454, 1084, 1240, 1295
HpySE526I ACGT 7 cut(s) 178, 190, 221, 530, 746, 805, 1157
Hsp92II CATG 6 cut(s) 107, 117, 520, 931, 1315, 1398
HspAI GCGC 2 cut(s) 48, 386
KroI GCCGGC 1 cut(s) 392
KroNI GCCGGC 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 1036
KspAI GTTAAC 1 cut(s) 976
Kzo9I GATC 9 cut(s) 607, 654, 794, 962, 997, 1036, 1063, 1168, 1372
LmnI GCTCC 1 cut(s) 549
LweI GCATC 1 cut(s) 1221
MaeII ACGT 7 cut(s) 178, 190, 221, 530, 746, 805, 1157
MaeIII GTNAC 7 cut(s) 149, 333, 379, 478, 629, 823, 1274
MalI GATC 9 cut(s) 609, 656, 796, 964, 999, 1038, 1065, 1170, 1374
MboI GATC 9 cut(s) 607, 654, 794, 962, 997, 1036, 1063, 1168, 1372
MboII GAAGA 4 cut(s) 159, 1068, 1085, 1154
MflI RGATCY 2 cut(s) 607, 962
MlsI TGGCCA 1 cut(s) 1216
MluCI AATT 4 cut(s) 663, 1011, 1120, 1235
MluNI TGGCCA 1 cut(s) 1216
MlyI GAGTC 2 cut(s) 157, 1287
MmeI TCCRAC 1 cut(s) 794
MnlI CCTC 8 cut(s) 18, 205, 212, 308, 638, 653, 1250, 1346
Mox20I TGGCCA 1 cut(s) 1216
MroNI GCCGGC 1 cut(s) 392
MroXI GAANNNNTTC 1 cut(s) 1015
MscI TGGCCA 1 cut(s) 1216
MseI TTAA 6 cut(s) 459, 509, 975, 1100, 1262, 1402
Msp20I TGGCCA 1 cut(s) 1216
MspI CCGG 9 cut(s) 71, 85, 243, 289, 393, 568, 622, 960, 980
MspR9I CCNGG 6 cut(s) 244, 327, 568, 622, 960, 980
Mva1269I GAATGC 1 cut(s) 1348
MvaI CCWGG 1 cut(s) 327
MvnI CGCG 1 cut(s) 1356
NaeI GCCGGC 1 cut(s) 394
NciI CCSGG 5 cut(s) 244, 568, 622, 960, 980
NcoI CCATGG 1 cut(s) 1394
NdeII GATC 9 cut(s) 607, 654, 794, 962, 997, 1036, 1063, 1168, 1372
NgoMIV GCCGGC 1 cut(s) 392
NheI GCTAGC 2 cut(s) 388, 799
NlaIII CATG 6 cut(s) 107, 117, 520, 931, 1315, 1398
NlaIV GGNNCC 2 cut(s) 421, 964
NmuCI GTSAC 3 cut(s) 149, 823, 1274
PaqCI CACCTGC 1 cut(s) 577
PceI AGGCCT 1 cut(s) 1335
PcsI WCGNNNNNNNCGW 3 cut(s) 129, 824, 1103
PctI GAATGC 1 cut(s) 1348
PdiI GCCGGC 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 1015
PfeI GAWTC 6 cut(s) 23, 715, 758, 832, 914, 1280
PinAI ACCGGT 2 cut(s) 84, 288
PkrI GCNGC 1 cut(s) 772
PleI GAGTC 2 cut(s) 156, 1287
PmaCI CACGTG 1 cut(s) 806
PmlI CACGTG 1 cut(s) 806
PpsI GAGTC 2 cut(s) 156, 1287
Ppu21I YACGTR 1 cut(s) 806
Psp1406I AACGTT 1 cut(s) 1157
Psp6I CCWGG 1 cut(s) 325
PspCI CACGTG 1 cut(s) 806
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 2 cut(s) 421, 964
PspPI GGNCC 2 cut(s) 143, 350
PsuI RGATCY 2 cut(s) 607, 962
RsaI GTAC 2 cut(s) 224, 533
RsaNI GTAC 2 cut(s) 223, 532
Rsr2I CGGWCCG 1 cut(s) 143
RsrII CGGWCCG 1 cut(s) 143
SaqAI TTAA 6 cut(s) 459, 509, 975, 1100, 1262, 1402
SatI GCNGC 1 cut(s) 771
Sau3AI GATC 9 cut(s) 607, 654, 794, 962, 997, 1036, 1063, 1168, 1372
Sau96I GGNCC 2 cut(s) 143, 350
SchI GAGTC 2 cut(s) 157, 1287
ScrFI CCNGG 6 cut(s) 244, 327, 568, 622, 960, 980
SfaNI GCATC 1 cut(s) 1221
SinI GGWCC 2 cut(s) 143, 350
SmlI CTYRAG 2 cut(s) 203, 790
SmoI CTYRAG 2 cut(s) 203, 790
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 4 cut(s) 663, 1011, 1120, 1235
SseBI AGGCCT 1 cut(s) 1335
SsiI CCGC 2 cut(s) 648, 770
SspI AATATT 2 cut(s) 935, 1302
StuI AGGCCT 1 cut(s) 1335
StyD4I CCNGG 6 cut(s) 242, 325, 566, 620, 958, 978
StyI CCWWGG 1 cut(s) 1394
TaaI ACNGT 6 cut(s) 143, 227, 424, 514, 635, 820
TaiI ACGT 7 cut(s) 181, 193, 224, 533, 749, 808, 1160
TaqI TCGA 5 cut(s) 845, 867, 944, 1044, 1210
TasI AATT 4 cut(s) 663, 1011, 1120, 1235
TauI GCSGC 1 cut(s) 773
TfiI GAWTC 6 cut(s) 23, 715, 758, 832, 914, 1280
Tru1I TTAA 6 cut(s) 459, 509, 975, 1100, 1262, 1402
Tru9I TTAA 6 cut(s) 459, 509, 975, 1100, 1262, 1402
TscAI CASTG 2 cut(s) 640, 1092
TseFI GTSAC 3 cut(s) 149, 823, 1274
Tsp45I GTSAC 3 cut(s) 149, 823, 1274
TspDTI ATGAA 1 cut(s) 824
TspGWI ACGGA 4 cut(s) 450, 478, 536, 1023
TspRI CASTG 2 cut(s) 640, 1092
VpaK11BI GGWCC 2 cut(s) 143, 350
XapI RAATTY 2 cut(s) 663, 1120
XbaI TCTAGA 1 cut(s) 1151
XcmI CCANNNNNNNNNTGG 1 cut(s) 1224
XmnI GAANNNNTTC 1 cut(s) 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.