Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0012241

Physical Location & Seq

Genomic Coordinates Forward (+)

51587011 .. 51591273

Gene Structure 4263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG355900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

ATGATACCTCCGGAGCAGGAAAACACCATGACAAACACTACTCCAACTAACAAGTCTAGCATACTCTCTAATGTAAGCAGGTCTGAGAATTATCAGACCGGCTGGGTTCATGCCGAACCGTCTGCTGGAACTACTAACGGAAGCCCGCGTCTGGCACCTGATGACATGCCGGAACAACCACGTCCGAGTACCCCTCATAGAGCTTCCGTCTTGCGCGAGTCCCTGCGCCCTGTGACACTTAAGTTCGAAGACGTCACCTACAGCATTAAGATGGAGCCCACAAAGGGTAGTTGCGTCAGTTCATATAATGAGCCAAAGCAAACACGAAATCTACTGAATGGGGTGAGTGGGATTGTGCGACCGGGGGAGCTCCTCGCAATGCTGGGGCCCTCCGGCAGCGGCAAGACCACTCTCTTGACGGCACTCGGCGGCCGCTTGCCGGGAAAAATTTCCGGCAAAGTGACCTACAATGGCCAGCATTTCTCAAGCTCCATGAAGCACAACACCGGCTTTGTGACACAAGATGATGTTCTATATCCTCATCTGACTGTGCTCGAAACCCTAACATTTACCGCCCTTTTGAGGCTTCCAAAGCAGCTGAGCAAGGAAGAGAAAAAAGAGCAGGCCGAGATGGTTATGGTGGAGCTCGGGTTGACCCGGTGCCGTGACAGTGTTATTGGCGGGCCTTTGCTGCGTGGGGTCTCGGGTGGGGAGAGGAAACGGGTCAGTATCGGGCAGGAGATGCTGGTGAACCCAAGTCTTTTGTTGCTGGACGAGCCTACCTCGGGGCTCGACTCTACCACGGCGCAGCGTATAGTTGCTACGCTGCGCCTACTGGCGAGAGGTGGGAGGACAGTGATCACCACCATCCACCAGCCGTCCAGCAGGTTGTATAGGATGTTTGATAAGGTGGTAGTTTTGTCGGACGGGTGCCCGATTTACAGCGGGCATGCAGGTCGGGTCATGGAGTATTTCGGGTCCGTTGGGTATGAGGTCGGGTTCAATTTCATCAACCCGGCTGATTTCTTGCTTGATCTTGCTAATGGTATAGCACCTGATGCTAAACAAGATGATCAACTAGAGTATAATGGCAGATTAGATCATCACGAAGAACAAAACACAACTAAGCAGTTTCTGATATCATCATATAAAAAGAACCTATACCCTGCATTGAAGGCAGAGATTCAGCAAAGTCAAAAAGACCCAGCTGTTCTTTCTTCTTCTTCTTCTTCAAGAACATCATCATCCAGAGGTAGTCGAGATTACGAATGGACTACCAGCTGGTGGGAGCAATTCAAGGTTTTGCTTCTGAGGGGTTTGAAAGAGAGAAAGCATGAATCTTTCTCAGGTTTAAGGATATTCCAAGTTATGTCGGTTGCAATTCTCTCAGGCCTTTGTTGGTGGCACTCAGACACTTCACATTTGCAAGATCAGGTTGGACTTCTCTTTTTCTTCTCCATATTCTGGGGCTTCTTCCCACTGTTCAATGCCATATTTGCCTTCCCTATGGAACGACCAATGCTAAGAAAGGAACGTTCCTCTGGCATGTATCGTCTCTCTTCCTATTACTTTGCCAGAACCGTGGGTGATTTGCCAATGGAGCTTGTGCTTCCCACTGTGTTTGTGACGGTTGCTTATTGGATGGGGGGTCTCAAGCCTTCACTAGTCACATATGGACTAACCCTCTTCATAGTTCTTTACAATGTGCTAGTCTCACAAGGCCTTGGACTAGCACTAGGTGCAATTCTAATGGATGTGAAACAGGGGACAACTCTGGCTTCAGTGACCATGTTGGTGTTTTTACTAGTAGGAGGATACTACATTTTGCACATTCCAGGTTTCATAGCTTGGTTGAAGTATATTTCTTTCAGTCATTACTGTTATAAGCTTCTTCTGGGAGTTCAATACTCGGTGAATGAAGTTTATGAGTGTGATCTGGGGGTGCGTTGCAGGGTACTTGACTATCCTGCTGTTAAGTTTGTGGGTCTTGATGGTTTGTGGTCTGATGTTGCTGCTTTGGGTGTAATGCTGGTGGGTTATAGGGTTCTGGCTTATGTCGCTTTGAGGATGGGGCAACCTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009965 GO:0010016 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071944 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

694

Amino Acids

77.17

Weight (kDa)

8.87

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	112 - 262	1.4e-28	ABC transporter
ABC2_membrane_7	PF19055	291 - 355	1.2e-09	ABC-2 type transporter
ABC2_membrane	PF01061	430 - 636	8.5e-43	ABC-2 type transporter
ABC2_membrane_3	PF12698	481 - 685	1.7e-08	ABC-2 family transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25620 AT3G25620
fragaria_vesca	FvH4_4g28360 FvH4_4g28360
malus_domestica	MD13G1049400.v1.1 MD16G1050400.v1.1
prunus_persica	Prupe.1G302500_v2.0.a1
pyrus_communis	pycom13g04360 pycom16g04430
rosa_chinensis	RchiOBHm_Chr4g0436231
rosa_laevigata	RLG00000006527
rosa_multiflora	Rmu_sc0007205.1_g000016
rosa_roxburghii	Rroxscaffold_5G00377420
rosa_rugosa	Rorug04G0292700
rosa_samantha	Rh4AG346900 Rh4BG355900 Rh4CG370500 Rh4DG349600
rosa_wichuraiana	Rw4G030320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1884
AatII	GACGTC	1 cut(s)	255
Acc36I	ACCTGC	3 cut(s)	69, 876, 944
AccB1I	GGYRCC	3 cut(s)	154, 660, 930
AccB7I	CCANNNNNTGG	2 cut(s)	1284, 1464
AccII	CGCG	2 cut(s)	148, 216
AccIII	TCCGGA	1 cut(s)	10
AciI	CCGC	7 cut(s)	146, 399, 429, 433, 573, 681, 945
AclI	AACGTT	1 cut(s)	1534
AcoI	YGGCCR	2 cut(s)	430, 472
AcsI	RAATTY	1 cut(s)	447
AcuI	CTGAAG	1 cut(s)	1764
AcyI	GRCGYC	1 cut(s)	252
AdeI	CACNNNGTG	1 cut(s)	1739
AfaI	GTAC	2 cut(s)	190, 1956
AfiI	CCNNNNNNNGG	8 cut(s)	125, 151, 284, 439, 582, 785, 1284, 1464
AflII	CTTAAG	1 cut(s)	239
AgsI	TTSAA	8 cut(s)	1003, 1174, 1233, 1297, 1321, 1486, 1855, 1904
AhlI	ACTAGT	2 cut(s)	1663, 1804
AjiI	CACGTC	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	1834
Alw21I	GWGCWC	3 cut(s)	372, 555, 648
Alw26I	GTCTC	4 cut(s)	706, 1559, 1655, 1717
AlwNI	CAGNNNCTG	1 cut(s)	1135
Ama87I	CYCGRG	3 cut(s)	647, 703, 784
Aor13HI	TCCGGA	1 cut(s)	10
AoxI	GGCC	7 cut(s)	386, 430, 472, 624, 683, 1390, 1720
ApaI	GGGCCC	1 cut(s)	390
ApeKI	GCWGC	6 cut(s)	396, 595, 691, 808, 826, 2012
ApoI	RAATTY	1 cut(s)	447
Asp700I	GAANNNNTTC	1 cut(s)	448
AspLEI	GCGC	4 cut(s)	216, 228, 808, 831
AspS9I	GGNCC	4 cut(s)	386, 387, 683, 978
AsuC2I	CCSGG	4 cut(s)	363, 441, 658, 1016
AsuHPI	GGTGA	6 cut(s)	247, 355, 760, 853, 1598, 1924
AsuII	TTCGAA	1 cut(s)	246
AvaI	CYCGRG	3 cut(s)	647, 703, 784
AvaII	GGWCC	1 cut(s)	978
BaeGI	GKGCMC	2 cut(s)	390, 935
BalI	TGGCCA	1 cut(s)	474
BanI	GGYRCC	3 cut(s)	154, 660, 930
BanII	GRGCYC	5 cut(s)	279, 372, 390, 648, 792
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	3 cut(s)	372, 555, 648
BbvI	GCAGC	6 cut(s)	408, 607, 678, 813, 820, 1999
BccI	CCATC	6 cut(s)	265, 625, 875, 1636, 1985, 2062
BceAI	ACGGC	4 cut(s)	435, 648, 819, 862
BcgI	CGANNNNNNTGC	4 cut(s)	104, 138, 938, 972
BciT130I	CCWGG	1 cut(s)	1836
BciVI	GTATCC	1 cut(s)	1808
BclI	TGATCA	2 cut(s)	858, 1072
BcnI	CCSGG	4 cut(s)	363, 441, 658, 1016
BcoDI	GTCTC	4 cut(s)	706, 1559, 1655, 1717
BcuI	ACTAGT	2 cut(s)	1663, 1804
BfaI	CTAG	7 cut(s)	57, 1079, 1664, 1709, 1730, 1736, 1805
BfmI	CTRYAG	1 cut(s)	259
BfrI	CTTAAG	1 cut(s)	239
BfuAI	ACCTGC	3 cut(s)	69, 876, 944
BfuI	GTATCC	1 cut(s)	1808
BisI	GCNGC	9 cut(s)	397, 400, 430, 433, 596, 692, 809, 827, 2013
BlpI	GCTNAGC	1 cut(s)	599
BlsI	GCNGC	9 cut(s)	398, 401, 431, 434, 597, 693, 810, 828, 2014
Bme1390I	CCNGG	5 cut(s)	363, 441, 658, 1016, 1836
Bme18I	GGWCC	1 cut(s)	978
BmeT110I	CYCGRG	3 cut(s)	647, 703, 784
BmgBI	CACGTC	1 cut(s)	182
BmgT120I	GGNCC	4 cut(s)	386, 387, 683, 978
BmiI	GGNNCC	7 cut(s)	156, 276, 387, 388, 662, 932, 979
BmrFI	CCNGG	5 cut(s)	363, 441, 658, 1016, 1836
BmsI	GCATC	2 cut(s)	732, 1048
BpiI	GAAGAC	1 cut(s)	255
BplI	GAGNNNNNCTC	4 cut(s)	178, 210, 767, 799
Bpu1102I	GCTNAGC	1 cut(s)	599
Bpu14I	TTCGAA	1 cut(s)	246
BpuEI	CTTGAG	2 cut(s)	469, 1637
BpuMI	CCSGG	4 cut(s)	363, 441, 658, 1016
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	2 cut(s)	706, 1655
BsaJI	CCNNGG	5 cut(s)	362, 783, 801, 1581, 1723
BsaWI	WCCGGW	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	635, 665
Bsc4I	CCNNNNNNNGG	8 cut(s)	125, 151, 284, 439, 582, 785, 1284, 1464
Bse118I	RCCGGY	2 cut(s)	98, 506
Bse1I	ACTGG	1 cut(s)	840
Bse3DI	GCAATG	1 cut(s)	384
BseAI	TCCGGA	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	1836
BseDI	CCNNGG	5 cut(s)	362, 783, 801, 1581, 1723
BseGI	GGATG	6 cut(s)	867, 903, 1244, 1647, 1759, 2073
BseLI	CCNNNNNNNGG	8 cut(s)	125, 151, 284, 439, 582, 785, 1284, 1464
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	6 cut(s)	75, 590, 1301, 1359, 1401, 1422
BseNI	ACTGG	1 cut(s)	840
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	2 cut(s)	390, 935
BseX3I	CGGCCG	1 cut(s)	430
BseXI	GCAGC	6 cut(s)	408, 607, 678, 813, 820, 1999
BseYI	CCCAGC	3 cut(s)	102, 382, 1204
Bsh1236I	CGCG	2 cut(s)	148, 216
Bsh1285I	CGRYCG	2 cut(s)	362, 433
BshFI	GGCC	7 cut(s)	388, 432, 474, 626, 685, 1392, 1722
BshNI	GGYRCC	3 cut(s)	154, 660, 930
BsiEI	CGRYCG	2 cut(s)	362, 433
BsiHKAI	GWGCWC	3 cut(s)	372, 555, 648
BsiHKCI	CYCGRG	3 cut(s)	647, 703, 784
BslFI	GGGAC	2 cut(s)	205, 1780
BslI	CCNNNNNNNGG	8 cut(s)	125, 151, 284, 439, 582, 785, 1284, 1464
BsmAI	GTCTC	4 cut(s)	706, 1559, 1655, 1717
BsmBI	CGTCTC	1 cut(s)	1559
BsmFI	GGGAC	2 cut(s)	205, 1780
BsnI	GGCC	7 cut(s)	388, 432, 474, 626, 685, 1392, 1722
Bso31I	GGTCTC	2 cut(s)	706, 1655
BsoBI	CYCGRG	3 cut(s)	647, 703, 784
Bsp119I	TTCGAA	1 cut(s)	246
Bsp120I	GGGCCC	1 cut(s)	386
Bsp1286I	GDGCHC	7 cut(s)	279, 372, 390, 555, 648, 792, 935
Bsp13I	TCCGGA	1 cut(s)	10
Bsp143I	GATC	6 cut(s)	858, 1033, 1072, 1099, 1429, 1933
Bsp1720I	GCTNAGC	1 cut(s)	599
BspACI	CCGC	7 cut(s)	146, 399, 429, 433, 573, 681, 945
BspANI	GGCC	7 cut(s)	388, 432, 474, 626, 685, 1392, 1722
BspCNI	CTCAG	6 cut(s)	76, 591, 1302, 1358, 1400, 1421
BspEI	TCCGGA	1 cut(s)	10
BspFNI	CGCG	2 cut(s)	148, 216
BspLI	GGNNCC	7 cut(s)	156, 276, 387, 388, 662, 932, 979
BspMI	ACCTGC	3 cut(s)	69, 876, 944
BspT104I	TTCGAA	1 cut(s)	246
BspT107I	GGYRCC	3 cut(s)	154, 660, 930
BspTI	CTTAAG	1 cut(s)	239
BspTNI	GGTCTC	2 cut(s)	706, 1655
BsrDI	GCAATG	1 cut(s)	384
BsrFI	RCCGGY	2 cut(s)	98, 506
BsrI	ACTGG	1 cut(s)	840
BssAI	RCCGGY	2 cut(s)	98, 506
BssECI	CCNNGG	5 cut(s)	362, 783, 801, 1581, 1723
BssMI	GATC	6 cut(s)	858, 1033, 1072, 1099, 1429, 1933
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	1723
Bst2UI	CCWGG	1 cut(s)	1836
Bst4CI	ACNGT	9 cut(s)	120, 550, 671, 856, 1482, 1582, 1618, 1630, 1880
Bst6I	CTCTTC	3 cut(s)	603, 1564, 1691
BstACI	GRCGYC	1 cut(s)	252
BstAFI	CTTAAG	1 cut(s)	239
BstAPI	GCANNNNNTGC	3 cut(s)	742, 1058, 1739
BstBI	TTCGAA	1 cut(s)	246
BstC8I	GCNNGC	7 cut(s)	146, 437, 476, 624, 683, 947, 951
BstDEI	CTNAG	8 cut(s)	84, 599, 1125, 1310, 1345, 1387, 1408, 1523
BstDSI	CCRYGG	2 cut(s)	801, 1581
BstF5I	GGATG	6 cut(s)	867, 903, 1244, 1647, 1759, 2073
BstFNI	CGCG	2 cut(s)	148, 216
BstHHI	GCGC	4 cut(s)	216, 228, 808, 831
BstKTI	GATC	6 cut(s)	861, 1036, 1075, 1102, 1432, 1936
BstMAI	GTCTC	4 cut(s)	706, 1559, 1655, 1717
BstMBI	GATC	6 cut(s)	858, 1033, 1072, 1099, 1429, 1933
BstMCI	CGRYCG	2 cut(s)	362, 433
BstNI	CCWGG	1 cut(s)	1836
BstNSI	RCATGY	3 cut(s)	169, 953, 1549
BstSCI	CCNGG	5 cut(s)	361, 439, 656, 1014, 1834
BstSFI	CTRYAG	1 cut(s)	259
BstSLI	GKGCMC	2 cut(s)	390, 935
BstUI	CGCG	2 cut(s)	148, 216
BstV1I	GCAGC	6 cut(s)	408, 607, 678, 813, 820, 1999
BstV2I	GAAGAC	1 cut(s)	255
BstXI	CCANNNNNNTGG	1 cut(s)	1582
BstZI	CGGCCG	1 cut(s)	430
BsuI	GTATCC	1 cut(s)	1808
BsuRI	GGCC	7 cut(s)	388, 432, 474, 626, 685, 1392, 1722
BtgI	CCRYGG	2 cut(s)	801, 1581
BtrI	CACGTC	1 cut(s)	182
BtsCI	GGATG	6 cut(s)	867, 903, 1244, 1647, 1759, 2073
BtsIMutI	CAGTG	6 cut(s)	676, 861, 1478, 1614, 1788, 2080
BveI	ACCTGC	3 cut(s)	69, 876, 944
Cac8I	GCNNGC	7 cut(s)	146, 437, 476, 624, 683, 947, 951
CaiI	CAGNNNCTG	1 cut(s)	1135
CciNI	GCGGCCGC	1 cut(s)	430
CfoI	GCGC	4 cut(s)	216, 228, 808, 831
Cfr10I	RCCGGY	2 cut(s)	98, 506
Cfr13I	GGNCC	4 cut(s)	386, 387, 683, 978
CseI	GACGC	2 cut(s)	137, 283
Csp6I	GTAC	2 cut(s)	189, 1955
CspCI	CAANNNNNGTGG	2 cut(s)	1603, 1638
CviAII	CATG	9 cut(s)	28, 110, 166, 493, 950, 964, 1334, 1546, 1789
CviQI	GTAC	2 cut(s)	189, 1955
DdeI	CTNAG	8 cut(s)	84, 599, 1125, 1310, 1345, 1387, 1408, 1523
DpnI	GATC	6 cut(s)	860, 1035, 1074, 1101, 1431, 1935
DpnII	GATC	6 cut(s)	858, 1033, 1072, 1099, 1429, 1933
DraIII	CACNNNGTG	1 cut(s)	1739
EaeI	YGGCCR	2 cut(s)	430, 472
EagI	CGGCCG	1 cut(s)	430
Eam1104I	CTCTTC	3 cut(s)	603, 1564, 1691
EarI	CTCTTC	3 cut(s)	603, 1564, 1691
Ecl136II	GAGCTC	2 cut(s)	370, 646
EclXI	CGGCCG	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	1723
Eco147I	AGGCCT	2 cut(s)	1392, 1722
Eco24I	GRGCYC	5 cut(s)	279, 372, 390, 648, 792
Eco31I	GGTCTC	2 cut(s)	706, 1655
Eco32I	GATATC	1 cut(s)	1140
Eco47I	GGWCC	1 cut(s)	978
Eco52I	CGGCCG	1 cut(s)	430
Eco53kI	GAGCTC	2 cut(s)	370, 646
Eco57I	CTGAAG	1 cut(s)	1764
Eco88I	CYCGRG	3 cut(s)	647, 703, 784
EcoICRI	GAGCTC	2 cut(s)	370, 646
EcoO109I	RGGNCCY	2 cut(s)	386, 387
EcoRII	CCWGG	1 cut(s)	1834
EcoRV	GATATC	1 cut(s)	1140
EcoT14I	CCWWGG	1 cut(s)	1723
EcoT38I	GRGCYC	5 cut(s)	279, 372, 390, 648, 792
ErhI	CCWWGG	1 cut(s)	1723
Esp3I	CGTCTC	1 cut(s)	1559
FaeI	CATG	9 cut(s)	31, 113, 169, 496, 953, 967, 1337, 1549, 1792
FaqI	GGGAC	2 cut(s)	205, 1780
FatI	CATG	9 cut(s)	27, 109, 165, 492, 949, 963, 1333, 1545, 1788
FauI	CCCGC	3 cut(s)	153, 674, 938
FauNDI	CATATG	1 cut(s)	1672
FbaI	TGATCA	2 cut(s)	858, 1072
Fnu4HI	GCNGC	9 cut(s)	397, 400, 430, 433, 596, 692, 809, 827, 2013
FokI	GGATG	6 cut(s)	854, 910, 1231, 1654, 1766, 2080
FriOI	GRGCYC	5 cut(s)	279, 372, 390, 648, 792
Fsp4HI	GCNGC	9 cut(s)	397, 400, 430, 433, 596, 692, 809, 827, 2013
FspBI	CTAG	7 cut(s)	57, 1079, 1664, 1709, 1730, 1736, 1805
GlaI	GCGC	4 cut(s)	215, 227, 807, 830
GluI	GCNGC	9 cut(s)	397, 400, 430, 433, 596, 692, 809, 827, 2013
GsaI	CCCAGC	3 cut(s)	106, 386, 1208
HaeIII	GGCC	7 cut(s)	388, 432, 474, 626, 685, 1392, 1722
HgaI	GACGC	2 cut(s)	137, 283
HhaI	GCGC	4 cut(s)	216, 228, 808, 831
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	9 cut(s)	31, 113, 169, 496, 953, 967, 1337, 1549, 1792
Hin6I	GCGC	4 cut(s)	214, 226, 806, 829
HinP1I	GCGC	4 cut(s)	214, 226, 806, 829
HincII	GTYRAC	1 cut(s)	654
HindII	GTYRAC	1 cut(s)	654
HindIII	AAGCTT	1 cut(s)	1886
HinfI	GANTC	4 cut(s)	218, 794, 1183, 1337
HphI	GGTGA	6 cut(s)	247, 355, 760, 853, 1598, 1924
Hpy166II	GTNNAC	2 cut(s)	654, 751
Hpy188I	TCNGA	9 cut(s)	85, 96, 186, 546, 925, 1137, 1311, 1411, 2005
Hpy188III	TCNNGA	7 cut(s)	11, 415, 1106, 1233, 1248, 1259, 1988
Hpy8I	GTNNAC	2 cut(s)	654, 751
HpyAV	CCTTC	3 cut(s)	1168, 1510, 1668
HpyCH4III	ACNGT	9 cut(s)	120, 550, 671, 856, 1482, 1582, 1618, 1630, 1880
HpyCH4IV	ACGT	3 cut(s)	181, 252, 1534
HpyCH4V	TGCA	7 cut(s)	953, 1169, 1379, 1426, 1742, 1828, 1950
HpyF3I	CTNAG	8 cut(s)	84, 599, 1125, 1310, 1345, 1387, 1408, 1523
HpySE526I	ACGT	3 cut(s)	181, 252, 1534
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	9 cut(s)	31, 113, 169, 496, 953, 967, 1337, 1549, 1792
HspAI	GCGC	4 cut(s)	214, 226, 806, 829
Kpn2I	TCCGGA	1 cut(s)	10
Ksp22I	TGATCA	2 cut(s)	858, 1072
Kzo9I	GATC	6 cut(s)	858, 1033, 1072, 1099, 1429, 1933
LmnI	GCTCC	8 cut(s)	13, 274, 367, 375, 494, 643, 1288, 1600
Lsp1109I	GCAGC	6 cut(s)	408, 607, 678, 813, 820, 1999
LweI	GCATC	2 cut(s)	732, 1048
MaeI	CTAG	7 cut(s)	57, 1079, 1664, 1709, 1730, 1736, 1805
MaeII	ACGT	3 cut(s)	181, 252, 1534
MaeIII	GTNAC	8 cut(s)	232, 253, 460, 514, 665, 1624, 1666, 1783
MalI	GATC	6 cut(s)	860, 1035, 1074, 1101, 1431, 1935
MboI	GATC	6 cut(s)	858, 1033, 1072, 1099, 1429, 1933
MhlI	GDGCHC	7 cut(s)	279, 372, 390, 555, 648, 792, 935
MlsI	TGGCCA	1 cut(s)	474
MluCI	AATT	6 cut(s)	88, 447, 1003, 1292, 1380, 1743
MluNI	TGGCCA	1 cut(s)	474
MlyI	GAGTC	2 cut(s)	227, 788
MmeI	TCCRAC	3 cut(s)	68, 903, 1417
Mox20I	TGGCCA	1 cut(s)	474
MroI	TCCGGA	1 cut(s)	10
MroXI	GAANNNNTTC	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	474
MseI	TTAA	4 cut(s)	240, 267, 1352, 1974
MslI	CAYNNNNRTG	2 cut(s)	269, 1793
Msp20I	TGGCCA	1 cut(s)	474
MspA1I	CMGCKG	5 cut(s)	399, 598, 945, 1208, 1281
MspCI	CTTAAG	1 cut(s)	239
MspR9I	CCNGG	5 cut(s)	363, 441, 658, 1016, 1836
MvaI	CCWGG	1 cut(s)	1836
MvnI	CGCG	2 cut(s)	148, 216
NciI	CCSGG	4 cut(s)	363, 441, 658, 1016
NdeI	CATATG	1 cut(s)	1672
NdeII	GATC	6 cut(s)	858, 1033, 1072, 1099, 1429, 1933
NlaIII	CATG	9 cut(s)	31, 113, 169, 496, 953, 967, 1337, 1549, 1792
NlaIV	GGNNCC	7 cut(s)	156, 276, 387, 388, 662, 932, 979
NmeAIII	GCCGAG	2 cut(s)	405, 652
NmuCI	GTSAC	8 cut(s)	232, 253, 460, 514, 665, 1624, 1666, 1783
NotI	GCGGCCGC	1 cut(s)	430
NspI	RCATGY	3 cut(s)	169, 953, 1549
NspV	TTCGAA	1 cut(s)	246
PaeI	GCATGC	1 cut(s)	953
PceI	AGGCCT	2 cut(s)	1392, 1722
PdmI	GAANNNNTTC	1 cut(s)	448
PfeI	GAWTC	2 cut(s)	1183, 1337
PflMI	CCANNNNNTGG	2 cut(s)	1284, 1464
PkrI	GCNGC	9 cut(s)	398, 401, 431, 434, 597, 693, 810, 828, 2014
PleI	GAGTC	2 cut(s)	226, 788
PpsI	GAGTC	2 cut(s)	226, 788
PsiI	TTATAA	1 cut(s)	1884
Psp124BI	GAGCTC	2 cut(s)	372, 648
Psp1406I	AACGTT	1 cut(s)	1534
Psp6I	CCWGG	1 cut(s)	1834
PspFI	CCCAGC	3 cut(s)	102, 382, 1204
PspGI	CCWGG	1 cut(s)	1834
PspN4I	GGNNCC	7 cut(s)	156, 276, 387, 388, 662, 932, 979
PspOMI	GGGCCC	1 cut(s)	386
PspPI	GGNCC	4 cut(s)	386, 387, 683, 978
PstNI	CAGNNNCTG	1 cut(s)	1135
PvuII	CAGCTG	3 cut(s)	598, 1208, 1281
RsaI	GTAC	2 cut(s)	190, 1956
RsaNI	GTAC	2 cut(s)	189, 1955
RseI	CAYNNNNRTG	2 cut(s)	269, 1793
SacI	GAGCTC	2 cut(s)	372, 648
SaqAI	TTAA	4 cut(s)	240, 267, 1352, 1974
SatI	GCNGC	9 cut(s)	397, 400, 430, 433, 596, 692, 809, 827, 2013
Sau3AI	GATC	6 cut(s)	858, 1033, 1072, 1099, 1429, 1933
Sau96I	GGNCC	4 cut(s)	386, 387, 683, 978
SchI	GAGTC	2 cut(s)	227, 788
ScrFI	CCNGG	5 cut(s)	363, 441, 658, 1016, 1836
SduI	GDGCHC	7 cut(s)	279, 372, 390, 555, 648, 792, 935
SfaNI	GCATC	2 cut(s)	732, 1048
SfcI	CTRYAG	1 cut(s)	259
SfuI	TTCGAA	1 cut(s)	246
SinI	GGWCC	1 cut(s)	978
SmiMI	CAYNNNNRTG	2 cut(s)	269, 1793
SmlI	CTYRAG	3 cut(s)	239, 484, 1652
SmoI	CTYRAG	3 cut(s)	239, 484, 1652
SpeI	ACTAGT	2 cut(s)	1663, 1804
SphI	GCATGC	1 cut(s)	953
Sse9I	AATT	6 cut(s)	88, 447, 1003, 1292, 1380, 1743
SseBI	AGGCCT	2 cut(s)	1392, 1722
SsiI	CCGC	7 cut(s)	146, 399, 429, 433, 573, 681, 945
SspMI	CTAG	7 cut(s)	57, 1079, 1664, 1709, 1730, 1736, 1805
SstI	GAGCTC	2 cut(s)	372, 648
StuI	AGGCCT	2 cut(s)	1392, 1722
StyD4I	CCNGG	5 cut(s)	361, 439, 656, 1014, 1834
StyI	CCWWGG	1 cut(s)	1723
TaaI	ACNGT	9 cut(s)	120, 550, 671, 856, 1482, 1582, 1618, 1630, 1880
TaiI	ACGT	3 cut(s)	184, 255, 1537
TaqI	TCGA	4 cut(s)	246, 555, 792, 1258
TasI	AATT	6 cut(s)	88, 447, 1003, 1292, 1380, 1743
TauI	GCSGC	3 cut(s)	402, 432, 435
TfiI	GAWTC	2 cut(s)	1183, 1337
Tru1I	TTAA	4 cut(s)	240, 267, 1352, 1974
Tru9I	TTAA	4 cut(s)	240, 267, 1352, 1974
TscAI	CASTG	5 cut(s)	676, 861, 1485, 1621, 1788
TseFI	GTSAC	8 cut(s)	232, 253, 460, 514, 665, 1624, 1666, 1783
TseI	GCWGC	6 cut(s)	396, 595, 691, 808, 826, 2012
Tsp45I	GTSAC	8 cut(s)	232, 253, 460, 514, 665, 1624, 1666, 1783
TspDTI	ATGAA	8 cut(s)	98, 291, 509, 997, 1350, 1678, 1831, 1932
TspGWI	ACGGA	3 cut(s)	153, 196, 970
TspRI	CASTG	5 cut(s)	676, 861, 1485, 1621, 1788
Van91I	CCANNNNNTGG	2 cut(s)	1284, 1464
Vha464I	CTTAAG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	978
XapI	RAATTY	1 cut(s)	447
XceI	RCATGY	3 cut(s)	169, 953, 1549
XmnI	GAANNNNTTC	1 cut(s)	448
XspI	CTAG	7 cut(s)	57, 1079, 1664, 1709, 1730, 1736, 1805
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.