Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0012241

Physical Location & Seq

Genomic Coordinates Forward (+)

2962401 .. 2965111

Gene Structure 2711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g04360.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGAGTATTTCGGGTCCATTGGATATGAGGTCGGGTTCAATTTCATCAACCCGGCTGATGTCTTGCTTGATCTTGCTAACGGTATAGCACCTGATGCAAAACAGGATGAGGAAGTAGAGTATAATGGCAGATTAGACCACCAAGAAGATCAAAACACAACCAAGCAGTTCTTAATATCTTCCTATAAAAAGTATCTATACCCTGCATTGACGACAGAGATTCAGCAAACTCATAAAGACACAGTTGTTTCTTCTTCAAGAACACCATCATCCAGAGGTAGTGGAAATTACAAATGGACCACCAGCTGGTGGGAGCAATTTAGCGTTTTGCTGGAAAGGGGTTTAAAAGAGAGGAAGCATGAATCTTTCTCTCGCTTAAGGATTTTCCAAGTCATGTCAGTTTCAATTATTTCCGGTCTTTTGTGGTGGCACTCCAACATTTCGCATATACAAGATCAGGTGGGACTTCTTTTCTTCTTCTCCATATTTTGGGGCTTCTTCCCTCTATCCAATGCCATATTTTCATTCCCTATGGAAAGACCAATGCTGATAAAAGAACGTTCCTCGGGCATGTACCGTCTCTCATCCTATTTTTTTGCGCGAACGGTTGGTGATTTGCCAATGGAACTTGTTCTCCCAACAGTCTTTGTAACAATAAGCTATTGGATGAGTGGTCTCAAGCCTTCAATAGTCACATTTGCACTAACCCTTTTCATTGTTCTTTACAATGTGCTAGTCGCCCAAGGCATAGGGCTAGCACTAGGGGCCATTCTAATGGATGTGAAGCAAGGCACAACTCTGGCTTCTGTGACAACGCTGGTGTTTTTACTTTTAGGCGGATATTACATTCAGCACTTGCCGCCTTTCATAGCTTGGTTGAAGTACATTTCGTACAGCCATTACTGCTACAAGCTTCTTGTGGGAGTACAATACTCGGTGCATGAGGTTTATGAGTGTGGGATGGGGGTGCATTGTAGGGTGCTGGACTTTCCTGGTATTAAGTGTGTAGGTCTTGATAATATGTGGATAGATGTAGCTGCATTGGCTGTGATGCTGGTGGGATATAGGGTTTTGGCTTATGTGGCATTGAGGATGGGCCAACCTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009965 GO:0010016 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071944 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

370

Amino Acids

42.01

Weight (kDa)

6.79

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25620 AT3G25620
fragaria_vesca	FvH4_4g28360 FvH4_4g28360
malus_domestica	MD13G1049400.v1.1 MD16G1050400.v1.1
prunus_persica	Prupe.1G302500_v2.0.a1
pyrus_communis	pycom13g04360 pycom16g04430
rosa_chinensis	RchiOBHm_Chr4g0436231
rosa_laevigata	RLG00000006527
rosa_multiflora	Rmu_sc0007205.1_g000016
rosa_roxburghii	Rroxscaffold_5G00377420
rosa_rugosa	Rorug04G0292700
rosa_samantha	Rh4AG346900 Rh4BG355900 Rh4CG370500 Rh4DG349600
rosa_wichuraiana	Rw4G030320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	306, 309, 489
AccII	CGCG	1 cut(s)	601
AciI	CCGC	2 cut(s)	837, 860
AclI	AACGTT	1 cut(s)	559
AfaI	GTAC	4 cut(s)	575, 884, 893, 927
AfiI	CCNNNNNNNGG	3 cut(s)	306, 309, 489
AflII	CTTAAG	1 cut(s)	376
AgsI	TTSAA	5 cut(s)	40, 258, 405, 687, 880
AjnI	CCWGG	1 cut(s)	991
AloI	GAACNNNNNNTCC	2 cut(s)	618, 650
AluBI	AGCT	5 cut(s)	306, 660, 872, 913, 1037
AluI	AGCT	5 cut(s)	306, 660, 872, 913, 1037
Alw26I	GTCTC	2 cut(s)	584, 680
Ama87I	CYCGRG	1 cut(s)	565
AoxI	GGCC	2 cut(s)	765, 1096
ApeKI	GCWGC	1 cut(s)	1037
Asp700I	GAANNNNTTC	1 cut(s)	630
AspLEI	GCGC	1 cut(s)	601
AspS9I	GGNCC	4 cut(s)	15, 297, 765, 1096
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	623
AsuNHI	GCTAGC	1 cut(s)	754
AvaI	CYCGRG	1 cut(s)	565
AvaII	GGWCC	2 cut(s)	15, 297
BbvI	GCAGC	1 cut(s)	1024
BccI	CCATC	3 cut(s)	274, 955, 1087
BciT130I	CCWGG	1 cut(s)	993
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	584, 680
BfaI	CTAG	3 cut(s)	734, 755, 761
BfrI	CTTAAG	1 cut(s)	376
BisI	GCNGC	2 cut(s)	860, 1038
BlsI	GCNGC	2 cut(s)	861, 1039
Bme1390I	CCNGG	2 cut(s)	53, 993
Bme18I	GGWCC	2 cut(s)	15, 297
BmeT110I	CYCGRG	1 cut(s)	565
BmgT120I	GGNCC	4 cut(s)	15, 297, 765, 1096
BmiI	GGNNCC	2 cut(s)	16, 766
BmrFI	CCNGG	2 cut(s)	53, 993
BmsI	GCATC	2 cut(s)	85, 1041
BmtI	GCTAGC	1 cut(s)	758
BpuEI	CTTGAG	1 cut(s)	662
BpuMI	CCSGG	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	680
BsaJI	CCNNGG	2 cut(s)	564, 742
BsaWI	WCCGGW	1 cut(s)	413
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bsc4I	CCNNNNNNNGG	3 cut(s)	306, 309, 489
BseBI	CCWGG	1 cut(s)	993
BseDI	CCNNGG	2 cut(s)	564, 742
BseGI	GGATG	7 cut(s)	112, 269, 584, 672, 784, 966, 1098
BseLI	CCNNNNNNNGG	3 cut(s)	306, 309, 489
BseXI	GCAGC	1 cut(s)	1024
Bsh1236I	CGCG	1 cut(s)	601
BshFI	GGCC	2 cut(s)	767, 1098
BsiHKCI	CYCGRG	1 cut(s)	565
BsiSI	CCGG	2 cut(s)	53, 414
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	3 cut(s)	306, 309, 489
BsmAI	GTCTC	2 cut(s)	584, 680
BsmBI	CGTCTC	1 cut(s)	584
BsmFI	GGGAC	1 cut(s)	477
BsnI	GGCC	2 cut(s)	767, 1098
Bso31I	GGTCTC	1 cut(s)	680
BsoBI	CYCGRG	1 cut(s)	565
Bsp143I	GATC	3 cut(s)	70, 148, 454
BspACI	CCGC	2 cut(s)	837, 860
BspANI	GGCC	2 cut(s)	767, 1098
BspFNI	CGCG	1 cut(s)	601
BspLI	GGNNCC	2 cut(s)	16, 766
BspOI	GCTAGC	1 cut(s)	758
BspTI	CTTAAG	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	680
BssECI	CCNNGG	2 cut(s)	564, 742
BssMI	GATC	3 cut(s)	70, 148, 454
BssT1I	CCWWGG	1 cut(s)	742
Bst2UI	CCWGG	1 cut(s)	993
Bst4CI	ACNGT	5 cut(s)	83, 244, 578, 607, 643
BstAFI	CTTAAG	1 cut(s)	376
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	756
BstF5I	GGATG	7 cut(s)	112, 269, 584, 672, 784, 966, 1098
BstFNI	CGCG	1 cut(s)	601
BstHHI	GCGC	1 cut(s)	601
BstKTI	GATC	3 cut(s)	73, 151, 457
BstMAI	GTCTC	2 cut(s)	584, 680
BstMBI	GATC	3 cut(s)	70, 148, 454
BstMWI	GCNNNNNNNGC	6 cut(s)	95, 764, 859, 903, 1043, 1082
BstNI	CCWGG	1 cut(s)	993
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	2 cut(s)	51, 991
BstUI	CGCG	1 cut(s)	601
BstV1I	GCAGC	1 cut(s)	1024
BstXI	CCANNNNNNTGG	1 cut(s)	775
BsuRI	GGCC	2 cut(s)	767, 1098
BtsCI	GGATG	7 cut(s)	112, 269, 584, 672, 784, 966, 1098
BtsIMutI	CAGTG	1 cut(s)	1105
Cac8I	GCNNGC	1 cut(s)	756
CfoI	GCGC	1 cut(s)	601
Cfr13I	GGNCC	4 cut(s)	15, 297, 765, 1096
Csp6I	GTAC	4 cut(s)	574, 883, 892, 926
CviAII	CATG	4 cut(s)	359, 394, 571, 941
CviQI	GTAC	4 cut(s)	574, 883, 892, 926
DpnI	GATC	3 cut(s)	72, 150, 456
DpnII	GATC	3 cut(s)	70, 148, 454
DraI	TTTAAA	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	852
Eco130I	CCWWGG	1 cut(s)	742
Eco31I	GGTCTC	1 cut(s)	680
Eco47I	GGWCC	2 cut(s)	15, 297
Eco88I	CYCGRG	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	991
EcoT14I	CCWWGG	1 cut(s)	742
ErhI	CCWWGG	1 cut(s)	742
Esp3I	CGTCTC	1 cut(s)	584
FaeI	CATG	4 cut(s)	362, 397, 574, 944
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	4 cut(s)	358, 393, 570, 940
Fnu4HI	GCNGC	2 cut(s)	860, 1038
FokI	GGATG	7 cut(s)	119, 256, 571, 679, 791, 973, 1105
Fsp4HI	GCNGC	2 cut(s)	860, 1038
FspBI	CTAG	3 cut(s)	734, 755, 761
GlaI	GCGC	1 cut(s)	600
GluI	GCNGC	2 cut(s)	860, 1038
HaeIII	GGCC	2 cut(s)	767, 1098
HapII	CCGG	2 cut(s)	53, 414
HhaI	GCGC	1 cut(s)	601
Hin1II	CATG	4 cut(s)	362, 397, 574, 944
Hin6I	GCGC	1 cut(s)	599
HinP1I	GCGC	1 cut(s)	599
HindIII	AAGCTT	1 cut(s)	911
HinfI	GANTC	2 cut(s)	220, 362
HpaII	CCGG	2 cut(s)	53, 414
HphI	GGTGA	1 cut(s)	623
Hpy188III	TCNNGA	3 cut(s)	258, 273, 1013
HpyAV	CCTTC	1 cut(s)	693
HpyCH4III	ACNGT	5 cut(s)	83, 244, 578, 607, 643
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	6 cut(s)	98, 206, 701, 940, 970, 1040
HpyF10VI	GCNNNNNNNGC	6 cut(s)	95, 764, 859, 903, 1043, 1082
HpySE526I	ACGT	1 cut(s)	559
Hsp92II	CATG	4 cut(s)	362, 397, 574, 944
HspAI	GCGC	1 cut(s)	599
Kzo9I	GATC	3 cut(s)	70, 148, 454
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	1 cut(s)	1024
LweI	GCATC	2 cut(s)	85, 1041
MaeI	CTAG	3 cut(s)	734, 755, 761
MaeII	ACGT	1 cut(s)	559
MaeIII	GTNAC	3 cut(s)	649, 691, 808
MalI	GATC	3 cut(s)	72, 150, 456
MboI	GATC	3 cut(s)	70, 148, 454
MboII	GAAGA	7 cut(s)	158, 171, 243, 246, 466, 469, 490
MluCI	AATT	4 cut(s)	40, 286, 317, 405
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	8 cut(s)	22, 103, 269, 345, 513, 574, 937, 1083
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	4 cut(s)	173, 344, 377, 999
MslI	CAYNNNNRTG	1 cut(s)	773
MspA1I	CMGCKG	1 cut(s)	306
MspCI	CTTAAG	1 cut(s)	376
MspI	CCGG	2 cut(s)	53, 414
MspR9I	CCNGG	2 cut(s)	53, 993
MvaI	CCWGG	1 cut(s)	993
MvnI	CGCG	1 cut(s)	601
MwoI	GCNNNNNNNGC	6 cut(s)	95, 764, 859, 903, 1043, 1082
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	3 cut(s)	70, 148, 454
NheI	GCTAGC	1 cut(s)	754
NlaIII	CATG	4 cut(s)	362, 397, 574, 944
NlaIV	GGNNCC	2 cut(s)	16, 766
NmuCI	GTSAC	2 cut(s)	691, 808
NspI	RCATGY	1 cut(s)	574
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	2 cut(s)	220, 362
PflMI	CCANNNNNTGG	3 cut(s)	306, 309, 489
PkrI	GCNGC	2 cut(s)	861, 1039
Psp1406I	AACGTT	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	991
PspGI	CCWGG	1 cut(s)	991
PspN4I	GGNNCC	2 cut(s)	16, 766
PspPI	GGNCC	4 cut(s)	15, 297, 765, 1096
PvuII	CAGCTG	1 cut(s)	306
RsaI	GTAC	4 cut(s)	575, 884, 893, 927
RsaNI	GTAC	4 cut(s)	574, 883, 892, 926
RseI	CAYNNNNRTG	1 cut(s)	773
SaqAI	TTAA	4 cut(s)	173, 344, 377, 999
SatI	GCNGC	2 cut(s)	860, 1038
Sau3AI	GATC	3 cut(s)	70, 148, 454
Sau96I	GGNCC	4 cut(s)	15, 297, 765, 1096
ScrFI	CCNGG	2 cut(s)	53, 993
SfaNI	GCATC	2 cut(s)	85, 1041
SinI	GGWCC	2 cut(s)	15, 297
SmiMI	CAYNNNNRTG	1 cut(s)	773
SmlI	CTYRAG	2 cut(s)	376, 677
SmoI	CTYRAG	2 cut(s)	376, 677
Sse9I	AATT	4 cut(s)	40, 286, 317, 405
SsiI	CCGC	2 cut(s)	837, 860
SspMI	CTAG	3 cut(s)	734, 755, 761
StyD4I	CCNGG	2 cut(s)	51, 991
StyI	CCWWGG	1 cut(s)	742
TaaI	ACNGT	5 cut(s)	83, 244, 578, 607, 643
TaiI	ACGT	1 cut(s)	562
TasI	AATT	4 cut(s)	40, 286, 317, 405
TatI	WGTACW	2 cut(s)	882, 925
TauI	GCSGC	1 cut(s)	862
TfiI	GAWTC	2 cut(s)	220, 362
Tru1I	TTAA	4 cut(s)	173, 344, 377, 999
Tru9I	TTAA	4 cut(s)	173, 344, 377, 999
TseFI	GTSAC	2 cut(s)	691, 808
TseI	GCWGC	1 cut(s)	1037
Tsp45I	GTSAC	2 cut(s)	691, 808
TspDTI	ATGAA	5 cut(s)	34, 375, 513, 703, 856
Van91I	CCANNNNNTGG	3 cut(s)	306, 309, 489
Vha464I	CTTAAG	1 cut(s)	376
VpaK11BI	GGWCC	2 cut(s)	15, 297
XceI	RCATGY	1 cut(s)	574
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	3 cut(s)	734, 755, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.