AT3G26780

Phosphoglycerate mutase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012251
Physical Location & Seq
Forward (+)
9848628 .. 9850543
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26780.1

Sequence Viewer

Length: 1200 bp
ATGGGTTCTTCACAATCTACGCAAATGGAAGACGAAGAAGAAGAAGAAGAGGAAACTGACAATGAAGAAGAAGAAGAAGAAGATAATGGCAGATCAAACACAAGACAATTAGACAATCTCCTAGTAAAGAAAGTTCTAGAACAAGAGCCTGAGATGTTACCATGTCACGCTTCAGCTTCACCACTCTCACCACAACTATCATCTCTCGGTACTCCAAGGCTTGGACCATCGATTAAAGTCTGGGATCCTTACAACGTCCTCTCTCCGCCGCCGCAACCGCCGTCTATCTTCTCTCGAATCGTGTCTGGTGATGAAGATCGAGCTGTGACAGAGGTTTATCTGATTAGCCATGGTGAGTCTGATCTTAATCTTAAACCTGATTTGATTGGTGGGAGATGTCATGTAGCTGCTCTTACTGCTAATGGTAAACGTCAAGCTAGGGCTCTTGCTGTTTTCTTCAAATCTCAAGGTGTTCGGTTTAATTCGGTTTATTCGTCACCTCTAGATCGAGCTAGATCCATGGCTGTTTCTGTTTGTCAGGAAATGAGTTTTCCGGAGGAGCATGTACAATCTTCGGATGCTGTTATTGAGATGAGTTTAGGGGATTGGGAAGGCTGTAATCAAGCAGAGATTTATAGTCCTGAAACTTTGAGTTTGATTGAAAGGTGCCAACCTGATTTCACAGCTCCATCTGGAGAATCACTGAGGCAAGTAGAGTTTCGAATGGTTCAGTTTCTAAACGGGACAGTCTCAGGAGTTGCAGAGAAGCTTAGGTCAGATTATTCTTCCACTACGAATCACAATGAAACTCATGAGCGTGATGGTGGTGTGTCACTTGCTTCGACTAACTGGGACTTACTACACAAGCATCGTCCCAGTCTTACAAGGAAGAAATCTGGTAAAAGCAGGCTTCAAGTGATGACTAATCACGAACCTGACGATGGAAACTCCCCAAGGGAAGAAGTTAATCATAATCACACTGACCTAAGTGATTCGTCTTCCTTAATCTCGAATTGTGTCGGGGTTTTCACGCATTCTTTGCCTATAAAGTGTCTTTTAACCGGAATCCTCGGTTGCAGTCCGGTAATGACTCATAAGATCTGTGTAGAAGACTCTTCAGTGACTGTGTTACAACATTCATGGAGAAACGGGTGGCAGATCAAACGAATGAATGATACTGCTCATCTTAGATTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

399

Amino Acids

44.32

Weight (kDa)

5.09

Isoelectric Point (pI)

60.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 112 - 250 1.4e-22 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12850 AT3G26780
fragaria_vesca FvH4_6g54210
malus_domestica MD09G1004000.v1.1 MD17G1007700.v1.1
prunus_persica Prupe.3G312600_v2.0.a1 Prupe.3G312600_v2.0.a1
pyrus_communis pycom111g00300 pycom17g00320
rosa_chinensis RchiOBHm_Chr2g0176401
rosa_laevigata RLG00000022410
rosa_multiflora Rmu_co8476031.1_g000001
rosa_roxburghii Rroxscaffold_2G00076490
rosa_rugosa Rorug02G0593900
rosa_samantha Rh2AG672400 Rh2BG683900 Rh2CG646600 Rh2DG697400
rosa_wichuraiana Rw2G055150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 666
AccB7I CCANNNNNTGG 1 cut(s) 221
AccIII TCCGGA 1 cut(s) 553
AciI CCGC 4 cut(s) 266, 269, 272, 278
AclWI GGATC 3 cut(s) 239, 252, 510
AcuI CTGAAG 2 cut(s) 156, 1101
AfaI GTAC 2 cut(s) 211, 567
AfiI CCNNNNNNNGG 2 cut(s) 221, 941
AgsI TTSAA 3 cut(s) 460, 662, 914
AluBI AGCT 7 cut(s) 176, 323, 407, 437, 512, 686, 769
AluI AGCT 7 cut(s) 176, 323, 407, 437, 512, 686, 769
Alw26I GTCTC 1 cut(s) 754
AlwI GGATC 3 cut(s) 239, 252, 510
AlwNI CAGNNNCTG 1 cut(s) 1124
Aor13HI TCCGGA 1 cut(s) 553
ApeKI GCWGC 1 cut(s) 407
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 5 cut(s) 171, 180, 320, 365, 489
AsuII TTCGAA 1 cut(s) 721
AvaII GGWCC 1 cut(s) 224
BamHI GGATCC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 666
BanII GRGCYC 1 cut(s) 445
BbsI GAAGAC 3 cut(s) 36, 990, 1116
BbvI GCAGC 1 cut(s) 394
BccI CCATC 4 cut(s) 235, 697, 815, 935
BceAI ACGGC 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 754
BfaI CTAG 5 cut(s) 122, 137, 438, 503, 513
BglII AGATCT 1 cut(s) 1098
BisI GCNGC 3 cut(s) 269, 272, 408
BlsI GCNGC 3 cut(s) 270, 273, 409
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 2 cut(s) 246, 668
BmrI ACTGGG 2 cut(s) 859, 870
BmsI GCATC 2 cut(s) 568, 877
BmuI ACTGGG 2 cut(s) 859, 870
BpiI GAAGAC 3 cut(s) 36, 990, 1116
BpmI CTGGAG 1 cut(s) 714
Bpu10I CCTNAGC 1 cut(s) 770
Bpu14I TTCGAA 1 cut(s) 721
BpuEI CTTGAG 1 cut(s) 450
Bsa29I ATCGAT 1 cut(s) 230
BsaBI GATNNNNATC 2 cut(s) 315, 366
BsaJI CCNNGG 5 cut(s) 215, 349, 519, 953, 1069
BsaWI WCCGGW 3 cut(s) 553, 1061, 1081
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 941
Bse1I ACTGG 2 cut(s) 854, 876
Bse8I GATNNNNATC 2 cut(s) 315, 366
BseAI TCCGGA 1 cut(s) 553
BseCI ATCGAT 1 cut(s) 230
BseDI CCNNGG 5 cut(s) 215, 349, 519, 953, 1069
BseGI GGATG 1 cut(s) 583
BseJI GATNNNNATC 2 cut(s) 315, 366
BseLI CCNNNNNNNGG 2 cut(s) 221, 941
BseMII CTCAG 3 cut(s) 141, 695, 765
BseNI ACTGG 2 cut(s) 854, 876
BseRI GAGGAG 1 cut(s) 572
BseXI GCAGC 1 cut(s) 394
BshNI GGYRCC 1 cut(s) 666
BshVI ATCGAT 1 cut(s) 230
BsiSI CCGG 3 cut(s) 554, 1062, 1082
BslFI GGGAC 3 cut(s) 757, 858, 866
BslI CCNNNNNNNGG 2 cut(s) 221, 941
BsmAI GTCTC 1 cut(s) 754
BsmFI GGGAC 3 cut(s) 757, 858, 866
BsmI GAATGC 1 cut(s) 1033
Bsp119I TTCGAA 1 cut(s) 721
Bsp1286I GDGCHC 1 cut(s) 445
Bsp13I TCCGGA 1 cut(s) 553
Bsp1407I TGTACA 1 cut(s) 565
Bsp143I GATC 8 cut(s) 92, 244, 316, 361, 505, 515, 1098, 1158
Bsp19I CCATGG 2 cut(s) 349, 519
BspACI CCGC 4 cut(s) 266, 269, 272, 278
BspCNI CTCAG 3 cut(s) 142, 696, 764
BspDI ATCGAT 1 cut(s) 230
BspEI TCCGGA 1 cut(s) 553
BspHI TCATGA 1 cut(s) 811
BspLI GGNNCC 2 cut(s) 246, 668
BspPI GGATC 3 cut(s) 239, 252, 510
BspT104I TTCGAA 1 cut(s) 721
BspT107I GGYRCC 1 cut(s) 666
BsrGI TGTACA 1 cut(s) 565
BsrI ACTGG 2 cut(s) 854, 876
BssECI CCNNGG 5 cut(s) 215, 349, 519, 953, 1069
BssMI GATC 8 cut(s) 92, 244, 316, 361, 505, 515, 1098, 1158
BssT1I CCWWGG 4 cut(s) 215, 349, 519, 953
Bst4CI ACNGT 2 cut(s) 748, 1126
Bst6I CTCTTC 2 cut(s) 42, 1120
BstAPI GCANNNNNTGC 1 cut(s) 1039
BstAUI TGTACA 1 cut(s) 565
BstBI TTCGAA 1 cut(s) 721
BstC8I GCNNGC 1 cut(s) 908
BstDEI CTNAG 6 cut(s) 150, 704, 751, 770, 986, 1187
BstDSI CCRYGG 2 cut(s) 349, 519
BstF5I GGATG 1 cut(s) 583
BstKTI GATC 8 cut(s) 95, 247, 319, 364, 508, 518, 1101, 1161
BstMAI GTCTC 1 cut(s) 754
BstMBI GATC 8 cut(s) 92, 244, 316, 361, 505, 515, 1098, 1158
BstMWI GCNNNNNNNGC 3 cut(s) 277, 416, 1039
BstNSI RCATGY 1 cut(s) 566
BstV1I GCAGC 1 cut(s) 394
BstV2I GAAGAC 3 cut(s) 36, 990, 1116
BstX2I RGATCY 3 cut(s) 244, 515, 1098
BstYI RGATCY 3 cut(s) 244, 515, 1098
Bsu15I ATCGAT 1 cut(s) 230
BsuTUI ATCGAT 1 cut(s) 230
BtgI CCRYGG 2 cut(s) 349, 519
BtsCI GGATG 1 cut(s) 583
BtsIMutI CAGTG 3 cut(s) 701, 978, 1125
Cac8I GCNNGC 1 cut(s) 908
CaiI CAGNNNCTG 1 cut(s) 1124
CciI TCATGA 1 cut(s) 811
Cfr13I GGNCC 1 cut(s) 224
ClaI ATCGAT 1 cut(s) 230
Csp6I GTAC 2 cut(s) 210, 566
CviAII CATG 7 cut(s) 162, 350, 401, 520, 563, 812, 1140
CviQI GTAC 2 cut(s) 210, 566
DdeI CTNAG 6 cut(s) 150, 704, 751, 770, 986, 1187
DpnI GATC 8 cut(s) 94, 246, 318, 363, 507, 517, 1100, 1160
DpnII GATC 8 cut(s) 92, 244, 316, 361, 505, 515, 1098, 1158
Eam1104I CTCTTC 2 cut(s) 42, 1120
EarI CTCTTC 2 cut(s) 42, 1120
EciI GGCGGA 1 cut(s) 255
Eco130I CCWWGG 4 cut(s) 215, 349, 519, 953
Eco24I GRGCYC 1 cut(s) 445
Eco47I GGWCC 1 cut(s) 224
Eco57I CTGAAG 2 cut(s) 156, 1101
EcoT14I CCWWGG 4 cut(s) 215, 349, 519, 953
EcoT38I GRGCYC 1 cut(s) 445
ErhI CCWWGG 4 cut(s) 215, 349, 519, 953
FaeI CATG 7 cut(s) 165, 353, 404, 523, 566, 815, 1143
FaqI GGGAC 3 cut(s) 757, 858, 866
FatI CATG 7 cut(s) 161, 349, 400, 519, 562, 811, 1139
Fnu4HI GCNGC 3 cut(s) 269, 272, 408
FokI GGATG 1 cut(s) 590
FriOI GRGCYC 1 cut(s) 445
Fsp4HI GCNGC 3 cut(s) 269, 272, 408
FspBI CTAG 5 cut(s) 122, 137, 438, 503, 513
GluI GCNGC 3 cut(s) 269, 272, 408
GsuI CTGGAG 1 cut(s) 714
HapII CCGG 3 cut(s) 554, 1062, 1082
Hin1II CATG 7 cut(s) 165, 353, 404, 523, 566, 815, 1143
HindIII AAGCTT 1 cut(s) 767
HinfI GANTC 8 cut(s) 297, 356, 698, 796, 992, 1065, 1090, 1112
HpaII CCGG 3 cut(s) 554, 1062, 1082
HphI GGTGA 5 cut(s) 171, 180, 320, 365, 489
Hpy166II GTNNAC 1 cut(s) 428
Hpy188I TCNGA 4 cut(s) 342, 361, 577, 778
Hpy8I GTNNAC 1 cut(s) 428
HpyAV CCTTC 1 cut(s) 605
HpyCH4III ACNGT 2 cut(s) 748, 1126
HpyCH4IV ACGT 2 cut(s) 255, 430
HpyCH4V TGCA 2 cut(s) 761, 1077
HpyF10VI GCNNNNNNNGC 3 cut(s) 277, 416, 1039
HpyF3I CTNAG 6 cut(s) 150, 704, 751, 770, 986, 1187
HpySE526I ACGT 2 cut(s) 255, 430
Hsp92II CATG 7 cut(s) 165, 353, 404, 523, 566, 815, 1143
Kpn2I TCCGGA 1 cut(s) 553
Kzo9I GATC 8 cut(s) 92, 244, 316, 361, 505, 515, 1098, 1158
LmnI GCTCC 2 cut(s) 559, 691
Lsp1109I GCAGC 1 cut(s) 394
LweI GCATC 2 cut(s) 568, 877
MaeI CTAG 5 cut(s) 122, 137, 438, 503, 513
MaeII ACGT 2 cut(s) 255, 430
MaeIII GTNAC 7 cut(s) 156, 164, 325, 495, 831, 1120, 1128
MalI GATC 8 cut(s) 94, 246, 318, 363, 507, 517, 1100, 1160
MboI GATC 8 cut(s) 92, 244, 316, 361, 505, 515, 1098, 1158
MflI RGATCY 3 cut(s) 244, 515, 1098
MhlI GDGCHC 1 cut(s) 445
MluCI AATT 3 cut(s) 107, 481, 1012
MlyI GAGTC 3 cut(s) 365, 1084, 1106
MnlI CCTC 7 cut(s) 43, 269, 325, 510, 550, 699, 1079
MroI TCCGGA 1 cut(s) 553
MseI TTAA 7 cut(s) 234, 366, 372, 480, 966, 1004, 1058
MslI CAYNNNNRTG 1 cut(s) 816
MspI CCGG 3 cut(s) 554, 1062, 1082
Mva1269I GAATGC 1 cut(s) 1033
MwoI GCNNNNNNNGC 3 cut(s) 277, 416, 1039
NcoI CCATGG 2 cut(s) 349, 519
NdeII GATC 8 cut(s) 92, 244, 316, 361, 505, 515, 1098, 1158
NlaIII CATG 7 cut(s) 165, 353, 404, 523, 566, 815, 1143
NlaIV GGNNCC 2 cut(s) 246, 668
NmuCI GTSAC 5 cut(s) 164, 325, 495, 831, 1120
NspI RCATGY 1 cut(s) 566
NspV TTCGAA 1 cut(s) 721
PagI TCATGA 1 cut(s) 811
PcsI WCGNNNNNNNCGW 2 cut(s) 491, 936
PctI GAATGC 1 cut(s) 1033
PfeI GAWTC 5 cut(s) 297, 698, 796, 992, 1065
PflMI CCANNNNNTGG 1 cut(s) 221
PkrI GCNGC 3 cut(s) 270, 273, 409
PleI GAGTC 3 cut(s) 364, 1084, 1106
PpsI GAGTC 3 cut(s) 364, 1084, 1106
PspN4I GGNNCC 2 cut(s) 246, 668
PspPI GGNCC 1 cut(s) 224
PsrI GAACNNNNNNTAC 2 cut(s) 117, 149
PstNI CAGNNNCTG 1 cut(s) 1124
PsuI RGATCY 3 cut(s) 244, 515, 1098
RsaI GTAC 2 cut(s) 211, 567
RsaNI GTAC 2 cut(s) 210, 566
RseI CAYNNNNRTG 1 cut(s) 816
SaqAI TTAA 7 cut(s) 234, 366, 372, 480, 966, 1004, 1058
SatI GCNGC 3 cut(s) 269, 272, 408
Sau3AI GATC 8 cut(s) 92, 244, 316, 361, 505, 515, 1098, 1158
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 3 cut(s) 365, 1084, 1106
SduI GDGCHC 1 cut(s) 445
SfaNI GCATC 2 cut(s) 568, 877
SfuI TTCGAA 1 cut(s) 721
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 816
SmlI CTYRAG 1 cut(s) 465
SmoI CTYRAG 1 cut(s) 465
Sse9I AATT 3 cut(s) 107, 481, 1012
SsiI CCGC 4 cut(s) 266, 269, 272, 278
SspMI CTAG 5 cut(s) 122, 137, 438, 503, 513
StyI CCWWGG 4 cut(s) 215, 349, 519, 953
TaaI ACNGT 2 cut(s) 748, 1126
TaiI ACGT 2 cut(s) 258, 433
TaqI TCGA 7 cut(s) 230, 295, 319, 508, 721, 842, 1010
TasI AATT 3 cut(s) 107, 481, 1012
TatI WGTACW 1 cut(s) 565
TauI GCSGC 2 cut(s) 271, 274
TfiI GAWTC 5 cut(s) 297, 698, 796, 992, 1065
Tru1I TTAA 7 cut(s) 234, 366, 372, 480, 966, 1004, 1058
Tru9I TTAA 7 cut(s) 234, 366, 372, 480, 966, 1004, 1058
TscAI CASTG 3 cut(s) 708, 985, 1125
TseFI GTSAC 5 cut(s) 164, 325, 495, 831, 1120
TseI GCWGC 1 cut(s) 407
Tsp45I GTSAC 5 cut(s) 164, 325, 495, 831, 1120
TspDTI ATGAA 5 cut(s) 78, 327, 819, 1128, 1184
TspRI CASTG 3 cut(s) 708, 985, 1125
Van91I CCANNNNNTGG 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 224
XbaI TCTAGA 2 cut(s) 136, 502
XceI RCATGY 1 cut(s) 566
XspI CTAG 5 cut(s) 122, 137, 438, 503, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.