Rw2G055150

Phosphoglycerate mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0012251
Physical Location & Seq
Reverse (-)
82650372 .. 82652464
2093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G055150.1

Sequence Viewer

Length: 966 bp
ATGGGTTCGACACAGTCCATGCAAGTGGTGGAAGAGAGCGAAGAAGACGAAGAAGAAGAAGAAGAAGAGGTGGAGGAAGGAGAAGAGATCAACGGCATTGGCGCGCCTGTCAGAAGTGAATTGGACAAGGATGATGATTTGGTCAAGAAGGTTCTGGAACAAGAGCCCGAGATGCTCTGCCACGCATCCGCATCGCCGCTCTCGCCTCAGCTCTCCTCCTCGGGACGCCGCGACTCGGACCCTCCATCAAGCTTCTCCTTGGAGGACGAGCGCTTCGTGACCACCACGGAGGTGTTTCTGGTTTGTCACGGCGAGTGTGAGTTGAATTTGAGGCCCGATTTGGTGGGTGGCCGGTGCCCCCAGGCTGCGTTGACTCCCAATGGCAAGAGGCAAGCGAGGGCCTTGGCGGTCTTCTTGAATTCCCAGAGGGTCACCTTCAATGCCGTTTACACCTCTCCTTTGGATCGTGCGCGCTCAATGGCGGTTTCTGTCTGTCAGGAAATGAATTTTCCTGTGGCACAGATTCAAACCTCGGATGCACTTGCAGAGATGAGCCAGGGGCAGTGGGAGGGCTGCTCTCGGTCTGAAATTTACACAGCTGAAGTTTTGAGCTTAATTGACAGACTTCAGCCTGATTTCTCTGCACCATCTGGAGAGTCACTTAGGCAAGTAGAATTTCAAATGGTCCATTTTTTAAATGGGACAGTCCTGGGGTTTCCTGAAAAATTGAGAGCATACTTCCCATCACACAATCAGAATGAGAGCCAAGGATTCTCACACCATAGTTCTCATGCTTCAACCAACTCAATACATGACCGAGATGGGCCTTCCCTCCCACCACCTCAATGGGATCTGCTTAACAGGCAGCGGCTGGGGCTCTTGAGGAAAAAGTCTGGTAAGAGTAGGCTGCAAGTTGTGACTACTACCGGAGATCATGAGGTTGAGGATGAGGGTTTCCCCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

321

Amino Acids

35.65

Weight (kDa)

4.66

Isoelectric Point (pI)

65.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 98 - 234 7.5e-22 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012251)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12850 AT3G26780
fragaria_vesca FvH4_6g54210
malus_domestica MD09G1004000.v1.1 MD17G1007700.v1.1
prunus_persica Prupe.3G312600_v2.0.a1 Prupe.3G312600_v2.0.a1
pyrus_communis pycom111g00300 pycom17g00320
rosa_chinensis RchiOBHm_Chr2g0176401
rosa_laevigata RLG00000022410
rosa_multiflora Rmu_co8476031.1_g000001
rosa_roxburghii Rroxscaffold_2G00076490
rosa_rugosa Rorug02G0593900
rosa_samantha Rh2AG672400 Rh2BG683900 Rh2CG646600 Rh2DG697400
rosa_wichuraiana Rw2G055150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 354
AccBSI CCGCTC 1 cut(s) 199
AccII CGCG 3 cut(s) 104, 231, 472
AciI CCGC 6 cut(s) 189, 197, 229, 407, 482, 868
AclWI GGATC 2 cut(s) 471, 858
AcoI YGGCCR 1 cut(s) 349
AcsI RAATTY 5 cut(s) 325, 418, 505, 588, 674
AcuI CTGAAG 2 cut(s) 611, 621
AcyI GRCGYC 1 cut(s) 226
AfeI AGCGCT 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 6 cut(s) 325, 418, 439, 527, 680, 798
AjnI CCWGG 3 cut(s) 360, 555, 708
AleI CACNNNNGTG 1 cut(s) 290
AluBI AGCT 4 cut(s) 211, 252, 599, 612
AluI AGCT 4 cut(s) 211, 252, 599, 612
AlwI GGATC 2 cut(s) 471, 858
AlwNI CAGNNNCTG 1 cut(s) 871
Ama87I CYCGRG 2 cut(s) 167, 220
Aor51HI AGCGCT 1 cut(s) 272
AoxI GGCC 4 cut(s) 332, 349, 399, 824
ApeKI GCWGC 4 cut(s) 365, 573, 865, 907
ApoI RAATTY 5 cut(s) 325, 418, 505, 588, 674
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
AscI GGCGCGCC 1 cut(s) 102
AspLEI GCGC 5 cut(s) 104, 106, 273, 472, 474
AspS9I GGNCC 5 cut(s) 238, 333, 399, 685, 824
AsuHPI GGTGA 1 cut(s) 424
AvaI CYCGRG 2 cut(s) 167, 220
AvaII GGWCC 2 cut(s) 238, 685
BaeGI GKGCMC 1 cut(s) 359
BanI GGYRCC 1 cut(s) 354
BanII GRGCYC 2 cut(s) 168, 879
BbsI GAAGAC 2 cut(s) 51, 403
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 4 cut(s) 352, 560, 877, 894
BccI CCATC 4 cut(s) 253, 655, 751, 815
BceAI ACGGC 3 cut(s) 109, 325, 428
BcgI CGANNNNNNTGC 2 cut(s) 174, 208
BciT130I CCWGG 3 cut(s) 362, 557, 710
BfoI RGCGCY 1 cut(s) 274
BisI GCNGC 7 cut(s) 197, 229, 366, 574, 866, 869, 908
BlsI GCNGC 7 cut(s) 198, 230, 367, 575, 867, 870, 909
Bme1390I CCNGG 3 cut(s) 362, 557, 710
Bme18I GGWCC 2 cut(s) 238, 685
BmeT110I CYCGRG 2 cut(s) 167, 220
BmgT120I GGNCC 5 cut(s) 238, 333, 399, 685, 824
BmiI GGNNCC 2 cut(s) 240, 356
BmrFI CCNGG 3 cut(s) 362, 557, 710
BmrI ACTGGG 1 cut(s) 955
BmsI GCATC 4 cut(s) 162, 194, 200, 526
BmuI ACTGGG 1 cut(s) 955
BpiI GAAGAC 2 cut(s) 51, 403
BplI GAGNNNNNCTC 2 cut(s) 560, 592
BpmI CTGGAG 1 cut(s) 672
Bpu10I CCTNAGC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 901
BsaHI GRCGYC 1 cut(s) 226
BsaJI CCNNGG 9 cut(s) 219, 258, 285, 360, 402, 531, 556, 709, 766
BsaWI WCCGGW 1 cut(s) 926
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse118I RCCGGY 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 961
BseBI CCWGG 3 cut(s) 362, 557, 710
BseDI CCNNGG 9 cut(s) 219, 258, 285, 360, 402, 531, 556, 709, 766
BseGI GGATG 4 cut(s) 136, 185, 541, 952
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 1 cut(s) 961
BsePI GCGCGC 2 cut(s) 102, 470
BseRI GAGGAG 2 cut(s) 205, 208
BseSI GKGCMC 1 cut(s) 359
BseXI GCAGC 4 cut(s) 352, 560, 877, 894
BseYI CCCAGC 1 cut(s) 871
BsgI GTGCAG 1 cut(s) 627
Bsh1236I CGCG 3 cut(s) 104, 231, 472
BshFI GGCC 4 cut(s) 334, 351, 401, 826
BshNI GGYRCC 1 cut(s) 354
BsiHKCI CYCGRG 2 cut(s) 167, 220
BsiSI CCGG 2 cut(s) 352, 927
BslFI GGGAC 2 cut(s) 237, 715
BslI CCNNNNNNNGG 1 cut(s) 235
BsmFI GGGAC 2 cut(s) 237, 715
BsnI GGCC 4 cut(s) 334, 351, 401, 826
BsoBI CYCGRG 2 cut(s) 167, 220
Bsp1286I GDGCHC 3 cut(s) 168, 359, 879
Bsp143I GATC 4 cut(s) 87, 463, 850, 931
BspACI CCGC 6 cut(s) 189, 197, 229, 407, 482, 868
BspANI GGCC 4 cut(s) 334, 351, 401, 826
BspCNI CTCAG 1 cut(s) 220
BspFNI CGCG 3 cut(s) 104, 231, 472
BspHI TCATGA 1 cut(s) 934
BspLI GGNNCC 2 cut(s) 240, 356
BspPI GGATC 2 cut(s) 471, 858
BspT107I GGYRCC 1 cut(s) 354
BsrBI CCGCTC 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 351
BsrI ACTGG 1 cut(s) 961
BssAI RCCGGY 1 cut(s) 351
BssECI CCNNGG 9 cut(s) 219, 258, 285, 360, 402, 531, 556, 709, 766
BssHII GCGCGC 2 cut(s) 102, 470
BssMI GATC 4 cut(s) 87, 463, 850, 931
BssNI GRCGYC 1 cut(s) 226
BssT1I CCWWGG 3 cut(s) 258, 402, 766
Bst2UI CCWGG 3 cut(s) 362, 557, 710
Bst4CI ACNGT 2 cut(s) 15, 706
Bst6I CTCTTC 3 cut(s) 27, 60, 78
BstACI GRCGYC 1 cut(s) 226
BstC8I GCNNGC 3 cut(s) 104, 393, 472
BstDEI CTNAG 2 cut(s) 207, 662
BstDSI CCRYGG 1 cut(s) 285
BstEII GGTNACC 1 cut(s) 430
BstF5I GGATG 4 cut(s) 136, 185, 541, 952
BstFNI CGCG 3 cut(s) 104, 231, 472
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 5 cut(s) 104, 106, 273, 472, 474
BstKTI GATC 4 cut(s) 90, 466, 853, 934
BstMBI GATC 4 cut(s) 87, 463, 850, 931
BstMWI GCNNNNNNNGC 4 cut(s) 172, 202, 862, 874
BstNI CCWGG 3 cut(s) 362, 557, 710
BstPI GGTNACC 1 cut(s) 430
BstSCI CCNGG 3 cut(s) 360, 555, 708
BstSLI GKGCMC 1 cut(s) 359
BstUI CGCG 3 cut(s) 104, 231, 472
BstV1I GCAGC 4 cut(s) 352, 560, 877, 894
BstV2I GAAGAC 2 cut(s) 51, 403
BstX2I RGATCY 1 cut(s) 850
BstXI CCANNNNNNTGG 2 cut(s) 25, 846
BstYI RGATCY 1 cut(s) 850
BsuRI GGCC 4 cut(s) 334, 351, 401, 826
BtgI CCRYGG 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 4 cut(s) 136, 185, 541, 952
BtsI GCAGTG 1 cut(s) 569
BtsIMutI CAGTG 1 cut(s) 569
Cac8I GCNNGC 3 cut(s) 104, 393, 472
CaiI CAGNNNCTG 1 cut(s) 871
CciI TCATGA 1 cut(s) 934
CfoI GCGC 5 cut(s) 104, 106, 273, 472, 474
Cfr10I RCCGGY 1 cut(s) 351
Cfr13I GGNCC 5 cut(s) 238, 333, 399, 685, 824
CseI GACGC 1 cut(s) 234
CviAII CATG 4 cut(s) 19, 791, 812, 935
DdeI CTNAG 2 cut(s) 207, 662
DpnI GATC 4 cut(s) 89, 465, 852, 933
DpnII GATC 4 cut(s) 87, 463, 850, 931
DraI TTTAAA 1 cut(s) 696
EaeI YGGCCR 1 cut(s) 349
Eam1104I CTCTTC 3 cut(s) 27, 60, 78
EarI CTCTTC 3 cut(s) 27, 60, 78
Eco130I CCWWGG 3 cut(s) 258, 402, 766
Eco24I GRGCYC 2 cut(s) 168, 879
Eco47I GGWCC 2 cut(s) 238, 685
Eco47III AGCGCT 1 cut(s) 272
Eco57I CTGAAG 2 cut(s) 611, 621
Eco88I CYCGRG 2 cut(s) 167, 220
Eco91I GGTNACC 1 cut(s) 430
EcoO109I RGGNCCY 1 cut(s) 399
EcoO65I GGTNACC 1 cut(s) 430
EcoRI GAATTC 1 cut(s) 418
EcoRII CCWGG 3 cut(s) 360, 555, 708
EcoT14I CCWWGG 3 cut(s) 258, 402, 766
EcoT38I GRGCYC 2 cut(s) 168, 879
ErhI CCWWGG 3 cut(s) 258, 402, 766
FaeI CATG 4 cut(s) 22, 794, 815, 938
FaiI YATR 6 cut(s) 20, 736, 783, 792, 813, 936
FaqI GGGAC 2 cut(s) 237, 715
FatI CATG 4 cut(s) 18, 790, 811, 934
Fnu4HI GCNGC 7 cut(s) 197, 229, 366, 574, 866, 869, 908
FokI GGATG 4 cut(s) 143, 172, 548, 959
FriOI GRGCYC 2 cut(s) 168, 879
Fsp4HI GCNGC 7 cut(s) 197, 229, 366, 574, 866, 869, 908
GlaI GCGC 5 cut(s) 103, 105, 272, 471, 473
GluI GCNGC 7 cut(s) 197, 229, 366, 574, 866, 869, 908
GsaI CCCAGC 1 cut(s) 875
GsuI CTGGAG 1 cut(s) 672
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 4 cut(s) 334, 351, 401, 826
HapII CCGG 2 cut(s) 352, 927
HgaI GACGC 1 cut(s) 234
HhaI GCGC 5 cut(s) 104, 106, 273, 472, 474
Hin1I GRCGYC 1 cut(s) 226
Hin1II CATG 4 cut(s) 22, 794, 815, 938
Hin6I GCGC 5 cut(s) 102, 104, 271, 470, 472
HinP1I GCGC 5 cut(s) 102, 104, 271, 470, 472
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HindIII AAGCTT 1 cut(s) 250
HinfI GANTC 5 cut(s) 233, 373, 523, 656, 771
HpaII CCGG 2 cut(s) 352, 927
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 2 cut(s) 372, 448
Hpy188I TCNGA 5 cut(s) 113, 238, 535, 586, 756
Hpy8I GTNNAC 2 cut(s) 372, 448
HpyAV CCTTC 4 cut(s) 71, 142, 445, 837
HpyCH4III ACNGT 2 cut(s) 15, 706
HpyCH4V TGCA 5 cut(s) 22, 539, 545, 644, 910
HpyF10VI GCNNNNNNNGC 4 cut(s) 172, 202, 862, 874
HpyF3I CTNAG 2 cut(s) 207, 662
Hsp92I GRCGYC 1 cut(s) 226
Hsp92II CATG 4 cut(s) 22, 794, 815, 938
HspAI GCGC 5 cut(s) 102, 104, 271, 470, 472
Kzo9I GATC 4 cut(s) 87, 463, 850, 931
Lsp1109I GCAGC 4 cut(s) 352, 560, 877, 894
LweI GCATC 4 cut(s) 162, 194, 200, 526
MaeIII GTNAC 5 cut(s) 277, 305, 430, 657, 916
MalI GATC 4 cut(s) 89, 465, 852, 933
MbiI CCGCTC 1 cut(s) 199
MboI GATC 4 cut(s) 87, 463, 850, 931
MflI RGATCY 1 cut(s) 850
MhlI GDGCHC 3 cut(s) 168, 359, 879
MluCI AATT 8 cut(s) 119, 325, 418, 505, 588, 615, 674, 725
MlyI GAGTC 3 cut(s) 227, 367, 665
MseI TTAA 3 cut(s) 614, 695, 858
MslI CAYNNNNRTG 3 cut(s) 23, 290, 844
MspA1I CMGCKG 2 cut(s) 599, 868
MspI CCGG 2 cut(s) 352, 927
MspR9I CCNGG 3 cut(s) 362, 557, 710
MvaI CCWGG 3 cut(s) 362, 557, 710
MvnI CGCG 3 cut(s) 104, 231, 472
MwoI GCNNNNNNNGC 4 cut(s) 172, 202, 862, 874
NdeII GATC 4 cut(s) 87, 463, 850, 931
NlaIII CATG 4 cut(s) 22, 794, 815, 938
NlaIV GGNNCC 2 cut(s) 240, 356
NmuCI GTSAC 5 cut(s) 277, 305, 430, 657, 916
OliI CACNNNNGTG 1 cut(s) 290
PagI TCATGA 1 cut(s) 934
PalAI GGCGCGCC 1 cut(s) 102
PauI GCGCGC 2 cut(s) 102, 470
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PfeI GAWTC 2 cut(s) 523, 771
PflFI GACNNNGTC 1 cut(s) 13
PkrI GCNGC 7 cut(s) 198, 230, 367, 575, 867, 870, 909
PleI GAGTC 3 cut(s) 227, 367, 664
PpsI GAGTC 3 cut(s) 227, 367, 664
Psp6I CCWGG 3 cut(s) 360, 555, 708
PspEI GGTNACC 1 cut(s) 430
PspFI CCCAGC 1 cut(s) 871
PspGI CCWGG 3 cut(s) 360, 555, 708
PspN4I GGNNCC 2 cut(s) 240, 356
PspPI GGNCC 5 cut(s) 238, 333, 399, 685, 824
PstNI CAGNNNCTG 1 cut(s) 871
PsuI RGATCY 1 cut(s) 850
PsyI GACNNNGTC 1 cut(s) 13
PteI GCGCGC 2 cut(s) 102, 470
PvuII CAGCTG 1 cut(s) 599
RseI CAYNNNNRTG 3 cut(s) 23, 290, 844
SaqAI TTAA 3 cut(s) 614, 695, 858
SatI GCNGC 7 cut(s) 197, 229, 366, 574, 866, 869, 908
Sau3AI GATC 4 cut(s) 87, 463, 850, 931
Sau96I GGNCC 5 cut(s) 238, 333, 399, 685, 824
SchI GAGTC 3 cut(s) 227, 367, 665
ScrFI CCNGG 3 cut(s) 362, 557, 710
SduI GDGCHC 3 cut(s) 168, 359, 879
SfaNI GCATC 4 cut(s) 162, 194, 200, 526
SgsI GGCGCGCC 1 cut(s) 102
SinI GGWCC 2 cut(s) 238, 685
SmiMI CAYNNNNRTG 3 cut(s) 23, 290, 844
SmlI CTYRAG 1 cut(s) 880
SmoI CTYRAG 1 cut(s) 880
Sse9I AATT 8 cut(s) 119, 325, 418, 505, 588, 615, 674, 725
SsiI CCGC 6 cut(s) 189, 197, 229, 407, 482, 868
StyD4I CCNGG 3 cut(s) 360, 555, 708
StyI CCWWGG 3 cut(s) 258, 402, 766
TaaI ACNGT 2 cut(s) 15, 706
TaqI TCGA 1 cut(s) 8
TaqII GACCGA 2 cut(s) 570, 831
TasI AATT 8 cut(s) 119, 325, 418, 505, 588, 615, 674, 725
TauI GCSGC 3 cut(s) 199, 231, 871
TfiI GAWTC 2 cut(s) 523, 771
Tru1I TTAA 3 cut(s) 614, 695, 858
Tru9I TTAA 3 cut(s) 614, 695, 858
TscAI CASTG 1 cut(s) 569
TseFI GTSAC 5 cut(s) 277, 305, 430, 657, 916
TseI GCWGC 4 cut(s) 365, 573, 865, 907
Tsp45I GTSAC 5 cut(s) 277, 305, 430, 657, 916
TspDTI ATGAA 1 cut(s) 518
TspGWI ACGGA 1 cut(s) 302
TspRI CASTG 1 cut(s) 569
Tth111I GACNNNGTC 1 cut(s) 13
VpaK11BI GGWCC 2 cut(s) 238, 685
XapI RAATTY 5 cut(s) 325, 418, 505, 588, 674
XcmI CCANNNNNNNNNTGG 3 cut(s) 25, 695, 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.