AT3G26980

May serve as docking site to facilitate the association of other proteins to the plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014969
Physical Location & Seq
Reverse (-)
9945756 .. 9948084
2329 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26980.1

Sequence Viewer

Length: 363 bp
ATGCCGGAGGAAGATTTGGTAGAACTGAAATTCCGGTTATATGACGGTTCAGATGTTGGCCCGTTTCAGTACTCTCCAACCGCCACAGTGTCAATGCTTAAGGAGAGAATTGTCTCTGAATGGCCTAAAGACAAGAAGATTGTTCCAAAATCAGCTAGTGACATCAAGTTGATAAATGCTGGTAAGATTTTGGAGAATGGTAAAACTGTTGCACAGTGTAAAGCTCCATTTGATGATCTCCCTAAATCCGTCATTACAATGCATGTTGTCGTGCAACTGTCTCCAACAAAAGCAAGACCAGAGAAAAAAATCGAAAAGGAAGAAGCCCCACAGAGAAGCTTTTGCTCATGTACCATAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

120

Amino Acids

13.45

Weight (kDa)

8.41

Isoelectric Point (pI)

54.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD_2 PF13881 5 - 118 3.8e-39 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26980
fragaria_vesca FvH4_6g53910
malus_domestica MD09G1007300.v1.1 MD17G1011200.v1.1
prunus_persica Prupe.3G309700_v2.0.a1
pyrus_communis pycom111g00560 pycom17g00590
rosa_chinensis RchiOBHm_Chr2g0176071
rosa_laevigata RLG00000022378
rosa_roxburghii Rroxscaffold_2G00076790
rosa_rugosa Rorug02G0590200
rosa_samantha Rh2AG669000 Rh2BG680600 Rh2CG643500 Rh2DG694300
rosa_wichuraiana Rw2G054870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 81
AcsI RAATTY 1 cut(s) 29
AfaI GTAC 2 cut(s) 71, 352
AflII CTTAAG 1 cut(s) 98
AloI GAACNNNNNNTCC 2 cut(s) 15, 47
AluBI AGCT 3 cut(s) 155, 224, 339
AluI AGCT 3 cut(s) 155, 224, 339
Alw26I GTCTC 2 cut(s) 118, 285
AoxI GGCC 2 cut(s) 58, 122
ApoI RAATTY 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 118, 285
BfaI CTAG 1 cut(s) 156
BfrI CTTAAG 1 cut(s) 98
BmcAI AGTACT 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 59
BsaWI WCCGGW 1 cut(s) 33
BshFI GGCC 2 cut(s) 60, 124
BsiSI CCGG 2 cut(s) 5, 34
BsmAI GTCTC 2 cut(s) 118, 285
BsnI GGCC 2 cut(s) 60, 124
Bsp143I GATC 1 cut(s) 235
BspACI CCGC 1 cut(s) 81
BspANI GGCC 2 cut(s) 60, 124
BspTI CTTAAG 1 cut(s) 98
BssMI GATC 1 cut(s) 235
Bst4CI ACNGT 5 cut(s) 47, 88, 208, 216, 279
BstAFI CTTAAG 1 cut(s) 98
BstKTI GATC 1 cut(s) 238
BstMAI GTCTC 2 cut(s) 118, 285
BstMBI GATC 1 cut(s) 235
BstNSI RCATGY 1 cut(s) 266
BsuRI GGCC 2 cut(s) 60, 124
BtsIMutI CAGTG 2 cut(s) 93, 221
Cfr13I GGNCC 1 cut(s) 59
Csp6I GTAC 2 cut(s) 70, 351
CviAII CATG 2 cut(s) 263, 348
CviJI RGCY 6 cut(s) 60, 124, 155, 224, 326, 339
CviKI_1 RGCY 6 cut(s) 60, 124, 155, 224, 326, 339
CviQI GTAC 2 cut(s) 70, 351
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
EcoT22I ATGCAT 1 cut(s) 264
FaeI CATG 2 cut(s) 266, 351
FaiI YATR 5 cut(s) 40, 42, 264, 349, 356
FatI CATG 2 cut(s) 262, 347
FspBI CTAG 1 cut(s) 156
HaeIII GGCC 2 cut(s) 60, 124
HapII CCGG 2 cut(s) 5, 34
Hin1II CATG 2 cut(s) 266, 351
HindIII AAGCTT 1 cut(s) 337
HpaII CCGG 2 cut(s) 5, 34
Hpy188I TCNGA 2 cut(s) 52, 118
HpyCH4III ACNGT 5 cut(s) 47, 88, 208, 216, 279
HpyCH4V TGCA 3 cut(s) 212, 262, 274
Hsp92II CATG 2 cut(s) 266, 351
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 4 cut(s) 18, 47, 165, 312
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 158
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 3 cut(s) 23, 148, 332
MluCI AATT 2 cut(s) 29, 108
MmeI TCCRAC 2 cut(s) 101, 308
Mph1103I ATGCAT 1 cut(s) 264
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 257
MspCI CTTAAG 1 cut(s) 98
MspI CCGG 2 cut(s) 5, 34
NdeII GATC 1 cut(s) 235
NlaIII CATG 2 cut(s) 266, 351
NmuCI GTSAC 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 264
NspI RCATGY 1 cut(s) 266
PspPI GGNCC 1 cut(s) 59
RsaI GTAC 2 cut(s) 71, 352
RsaNI GTAC 2 cut(s) 70, 351
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 1 cut(s) 99
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 1 cut(s) 59
ScaI AGTACT 1 cut(s) 71
SetI ASST 3 cut(s) 157, 226, 341
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 2 cut(s) 29, 108
SsiI CCGC 1 cut(s) 81
SspMI CTAG 1 cut(s) 156
TaaI ACNGT 5 cut(s) 47, 88, 208, 216, 279
TaqI TCGA 1 cut(s) 312
TasI AATT 2 cut(s) 29, 108
TatI WGTACW 1 cut(s) 69
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 2 cut(s) 93, 221
TseFI GTSAC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 158
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 2 cut(s) 93, 221
Vha464I CTTAAG 1 cut(s) 98
XapI RAATTY 1 cut(s) 29
XceI RCATGY 1 cut(s) 266
XspI CTAG 1 cut(s) 156
ZrmI AGTACT 1 cut(s) 71
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.