pycom17g00590

May serve as docking site to facilitate the association of other proteins to the plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014969
Physical Location & Seq
Reverse (-)
415965 .. 418366
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g00590.2

Sequence Viewer

Length: 357 bp
ATGCCGGAGGAGGACCTGGTGGAGCTCAAGTTCCGTCTGTATGATGGATCGGATATCGGCCCGTTCCGCTACTCGCCTGCGTCCACCGTGGCAATGCTCAAGGAGAGAATCGTGGCCGAGTGGCCAAAAGATAAAAAGATTGCACCAAAAGGAGCAAACGACATAAAATTGATAAATGCTGGGAAGATTTTGGAAAACAACAAGACTGTTGCCCAGTGTAGAGCACCATTTGGAGAGCTTCCAAGCGGGATTATCACCATGCATGTTGTTGTTCGGCCTGCTATAGCAAAACCAAAAACAGAGAAGAAGGTTGATGAGGTCCCAAGGAAAAACATGTGTTCATGTTCAATATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

119

Amino Acids

13.11

Weight (kDa)

9.19

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26980
fragaria_vesca FvH4_6g53910
malus_domestica MD09G1007300.v1.1 MD17G1011200.v1.1
prunus_persica Prupe.3G309700_v2.0.a1
pyrus_communis pycom111g00560 pycom17g00590
rosa_chinensis RchiOBHm_Chr2g0176071
rosa_laevigata RLG00000022378
rosa_roxburghii Rroxscaffold_2G00076790
rosa_rugosa Rorug02G0590200
rosa_samantha Rh2AG669000 Rh2BG680600 Rh2CG643500 Rh2DG694300
rosa_wichuraiana Rw2G054870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 67, 246
AclWI GGATC 1 cut(s) 55
AcoI YGGCCR 2 cut(s) 114, 122
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 1 cut(s) 348
AjnI CCWGG 1 cut(s) 15
AloI GAACNNNNNNTCC 2 cut(s) 14, 46
AluBI AGCT 2 cut(s) 25, 238
AluI AGCT 2 cut(s) 25, 238
Alw21I GWGCWC 2 cut(s) 27, 226
AlwI GGATC 1 cut(s) 55
AoxI GGCC 4 cut(s) 58, 114, 122, 275
AspS9I GGNCC 3 cut(s) 13, 59, 319
AsuHPI GGTGA 1 cut(s) 247
AvaII GGWCC 2 cut(s) 13, 319
BalI TGGCCA 1 cut(s) 124
BanII GRGCYC 1 cut(s) 27
Bbv12I GWGCWC 2 cut(s) 27, 226
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 17
BfmI CTRYAG 1 cut(s) 282
Bme1390I CCNGG 1 cut(s) 17
Bme18I GGWCC 2 cut(s) 13, 319
BmgT120I GGNCC 3 cut(s) 13, 59, 319
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 17
BmrI ACTGGG 1 cut(s) 208
BmuI ACTGGG 1 cut(s) 208
BpuEI CTTGAG 2 cut(s) 11, 83
BsaJI CCNNGG 2 cut(s) 87, 323
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 87, 323
BseMI GCAATG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 23
BseYI CCCAGC 1 cut(s) 179
BshFI GGCC 4 cut(s) 60, 116, 124, 277
BsiHKAI GWGCWC 2 cut(s) 27, 226
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 4 cut(s) 60, 116, 124, 277
Bsp1286I GDGCHC 2 cut(s) 27, 226
Bsp143I GATC 1 cut(s) 47
BspACI CCGC 2 cut(s) 67, 246
BspANI GGCC 4 cut(s) 60, 116, 124, 277
BspLI GGNNCC 1 cut(s) 321
BspPI GGATC 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 99
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 2 cut(s) 87, 323
BssMI GATC 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 323
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 2 cut(s) 88, 208
BstC8I GCNNGC 2 cut(s) 78, 279
BstDSI CCRYGG 1 cut(s) 87
BstKTI GATC 1 cut(s) 50
BstMBI GATC 1 cut(s) 47
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstNI CCWGG 1 cut(s) 17
BstNSI RCATGY 2 cut(s) 266, 337
BstSCI CCNGG 1 cut(s) 15
BstSFI CTRYAG 1 cut(s) 282
BsuRI GGCC 4 cut(s) 60, 116, 124, 277
BtgI CCRYGG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 221
Cac8I GCNNGC 2 cut(s) 78, 279
Cfr13I GGNCC 3 cut(s) 13, 59, 319
CseI GACGC 1 cut(s) 69
CsiI ACCWGGT 1 cut(s) 15
CviAII CATG 4 cut(s) 259, 263, 334, 342
CviJI RGCY 6 cut(s) 25, 60, 116, 124, 238, 277
CviKI_1 RGCY 6 cut(s) 25, 60, 116, 124, 238, 277
DpnI GATC 1 cut(s) 49
DpnII GATC 1 cut(s) 47
EaeI YGGCCR 2 cut(s) 114, 122
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 323
Eco24I GRGCYC 1 cut(s) 27
Eco32I GATATC 1 cut(s) 55
Eco47I GGWCC 2 cut(s) 13, 319
Eco53kI GAGCTC 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 25
EcoO109I RGGNCCY 2 cut(s) 13, 319
EcoRII CCWGG 1 cut(s) 15
EcoRV GATATC 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 323
EcoT22I ATGCAT 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 4 cut(s) 262, 266, 337, 345
FaiI YATR 7 cut(s) 42, 164, 260, 264, 284, 335, 343
FaqI GGGAC 1 cut(s) 305
FatI CATG 4 cut(s) 258, 262, 333, 341
FauI CCCGC 1 cut(s) 239
FriOI GRGCYC 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 183
HaeIII GGCC 4 cut(s) 60, 116, 124, 277
HapII CCGG 1 cut(s) 5
HgaI GACGC 1 cut(s) 69
Hin1II CATG 4 cut(s) 262, 266, 337, 345
HinfI GANTC 1 cut(s) 108
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 52
Hpy8I GTNNAC 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 2 cut(s) 88, 208
HpyCH4V TGCA 2 cut(s) 143, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
Hsp92II CATG 4 cut(s) 262, 266, 337, 345
Kzo9I GATC 1 cut(s) 47
LmnI GCTCC 2 cut(s) 22, 152
LpnPI CCDG 7 cut(s) 2, 18, 29, 90, 165, 227, 291
MabI ACCWGGT 1 cut(s) 15
MalI GATC 1 cut(s) 49
MboI GATC 1 cut(s) 47
MboII GAAGA 2 cut(s) 196, 316
MhlI GDGCHC 2 cut(s) 27, 226
MlsI TGGCCA 1 cut(s) 124
MluCI AATT 1 cut(s) 167
MluNI TGGCCA 1 cut(s) 124
MnlI CCTC 2 cut(s) 4, 310
Mox20I TGGCCA 1 cut(s) 124
Mph1103I ATGCAT 1 cut(s) 264
MscI TGGCCA 1 cut(s) 124
Msp20I TGGCCA 1 cut(s) 124
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 66
NdeII GATC 1 cut(s) 47
NlaIII CATG 4 cut(s) 262, 266, 337, 345
NlaIV GGNNCC 1 cut(s) 321
NmeAIII GCCGAG 1 cut(s) 142
NsiI ATGCAT 1 cut(s) 264
NspI RCATGY 2 cut(s) 266, 337
PciI ACATGT 1 cut(s) 333
PfeI GAWTC 1 cut(s) 108
PpuMI RGGWCCY 2 cut(s) 13, 319
PscI ACATGT 1 cut(s) 333
Psp124BI GAGCTC 1 cut(s) 27
Psp5II RGGWCCY 2 cut(s) 13, 319
Psp6I CCWGG 1 cut(s) 15
PspFI CCCAGC 1 cut(s) 179
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 3 cut(s) 13, 59, 319
PspPPI RGGWCCY 2 cut(s) 13, 319
SacI GAGCTC 1 cut(s) 27
Sau3AI GATC 1 cut(s) 47
Sau96I GGNCC 3 cut(s) 13, 59, 319
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 2 cut(s) 27, 226
SetI ASST 5 cut(s) 18, 27, 240, 312, 321
SexAI ACCWGGT 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 2 cut(s) 13, 319
SmlI CTYRAG 2 cut(s) 26, 98
SmoI CTYRAG 2 cut(s) 26, 98
Sse9I AATT 1 cut(s) 167
SsiI CCGC 2 cut(s) 67, 246
SspI AATATT 1 cut(s) 351
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 15
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 2 cut(s) 88, 208
TasI AATT 1 cut(s) 167
TfiI GAWTC 1 cut(s) 108
TscAI CASTG 1 cut(s) 221
TspDTI ATGAA 1 cut(s) 330
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 221
VpaK11BI GGWCC 2 cut(s) 13, 319
XceI RCATGY 2 cut(s) 266, 337
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.