Rorug02G0590200

May serve as docking site to facilitate the association of other proteins to the plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014969
Physical Location & Seq
Forward (+)
71269413 .. 71273312
3900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0590200.1

Sequence Viewer

Length: 735 bp
ATGAGCAGTAGCGGCGGCGGCGTTTCAATGGCTTTTCGGGACAGGCAGAGTGCTCGCTTCAACAGTGTTTTGAGAGCGCTCTCTGCGGGAAATTGGGGTTCGAATTTGTGCTCGCTCTTCACTTCTCCAAACCCGCCTTCAACTCCAGAAGAATCGCAAAAAATTTACTCTCTGATTTCGGTTTATTCCCTTTCAAAATGCGCCGAAGATGAGGATCGGGTCTCAGGTGGAGAAGTTAAGCACAAATCCTCAGATGGTGTTGCCGCAAGTGCCATGCCTGCTCTAAGTCTTGATGGTGGTGCGAAATCTGGAAGGAGCAGCGAAGGTGGTAGAGATATTATAACTGATGCTCAGGACACTGATGAAAGAAGTTGCAACTCATCCTTTGATTCCATTTCAAGTAGGGTTGAGCAAGTATTTGAGAATGTTGATGAAGGTGAAAGTGATATTCCTTGGGAAGACCTGGTTATTGGAGAAAGAATTGGACTAGGGATTGTAGGAATTTGCTGCAAGTGGTCAATAAATACCAACTACATTTGGAAGTCACAATCGTTAATTTACCAGAGGGGTTTGATAAATGCTTCTGGAGATGTTGGCCAATTCATTGAGGGATGGACCCTTTACGAGATACTGAAGTATGTACCTGAACATAATTGGATTGTCTATGAACAAGCTCTCCAAGCAAACCCTGTTTTAGCCAAAATGGTGATAAGCCAGGGTCGTGTTTGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

244

Amino Acids

26.59

Weight (kDa)

4.82

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26980
fragaria_vesca FvH4_6g53910
malus_domestica MD09G1007300.v1.1 MD17G1011200.v1.1
prunus_persica Prupe.3G309700_v2.0.a1
pyrus_communis pycom111g00560 pycom17g00590
rosa_chinensis RchiOBHm_Chr2g0176071
rosa_laevigata RLG00000022378
rosa_roxburghii Rroxscaffold_2G00076790
rosa_rugosa Rorug02G0590200
rosa_samantha Rh2AG669000 Rh2BG680600 Rh2CG643500 Rh2DG694300
rosa_wichuraiana Rw2G054870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 341
AciI CCGC 6 cut(s) 12, 15, 18, 86, 134, 264
AclWI GGATC 1 cut(s) 222
AcoI YGGCCR 1 cut(s) 595
AcsI RAATTY 3 cut(s) 103, 162, 501
AcuI CTGAAG 1 cut(s) 653
AfaI GTAC 1 cut(s) 642
AfeI AGCGCT 1 cut(s) 78
AgsI TTSAA 5 cut(s) 27, 61, 141, 195, 399
AjnI CCWGG 2 cut(s) 462, 714
AjuI GAANNNNNNNTTGG 2 cut(s) 121, 153
AloI GAACNNNNNNTCC 2 cut(s) 660, 692
AluBI AGCT 1 cut(s) 674
AluI AGCT 1 cut(s) 674
Alw21I GWGCWC 2 cut(s) 55, 113
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 1 cut(s) 222
Aor51HI AGCGCT 1 cut(s) 78
AoxI GGCC 1 cut(s) 595
ApeKI GCWGC 2 cut(s) 318, 507
ApoI RAATTY 3 cut(s) 103, 162, 501
AspLEI GCGC 2 cut(s) 79, 203
AspS9I GGNCC 1 cut(s) 615
AsuHPI GGTGA 2 cut(s) 449, 718
AsuII TTCGAA 1 cut(s) 101
AvaII GGWCC 1 cut(s) 615
BaeI ACNNNNGTAYC 2 cut(s) 620, 653
BalI TGGCCA 1 cut(s) 597
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 2 cut(s) 55, 113
BbvI GCAGC 2 cut(s) 330, 494
BccI CCATC 3 cut(s) 248, 287, 606
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 2 cut(s) 464, 716
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 1 cut(s) 488
BfoI RGCGCY 1 cut(s) 80
BisI GCNGC 6 cut(s) 13, 16, 19, 264, 319, 508
BlsI GCNGC 6 cut(s) 14, 17, 20, 265, 320, 509
Bme1390I CCNGG 2 cut(s) 464, 716
Bme18I GGWCC 1 cut(s) 615
BmgT120I GGNCC 1 cut(s) 615
BmiI GGNNCC 1 cut(s) 617
BmrFI CCNGG 2 cut(s) 464, 716
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 465
BpmI CTGGAG 2 cut(s) 129, 606
Bpu10I CCTNAGC 1 cut(s) 351
Bpu14I TTCGAA 1 cut(s) 101
BsaBI GATNNNNATC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 452, 715
BsaXI ACNNNNNCTCC 2 cut(s) 660, 690
Bse8I GATNNNNATC 1 cut(s) 213
BseBI CCWGG 2 cut(s) 464, 716
BseDI CCNNGG 2 cut(s) 452, 715
BseGI GGATG 2 cut(s) 380, 617
BseJI GATNNNNATC 1 cut(s) 213
BseMII CTCAG 3 cut(s) 237, 264, 365
BseXI GCAGC 2 cut(s) 330, 494
BshFI GGCC 1 cut(s) 597
BsiHKAI GWGCWC 2 cut(s) 55, 113
BslFI GGGAC 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 53
BsnI GGCC 1 cut(s) 597
Bso31I GGTCTC 1 cut(s) 226
Bsp119I TTCGAA 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 55, 113
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 6 cut(s) 12, 15, 18, 86, 134, 264
BspANI GGCC 1 cut(s) 597
BspCNI CTCAG 3 cut(s) 236, 263, 364
BspLI GGNNCC 1 cut(s) 617
BspPI GGATC 1 cut(s) 222
BspQI GCTCTTC 1 cut(s) 122
BspT104I TTCGAA 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 452, 715
BssMI GATC 1 cut(s) 214
BssT1I CCWWGG 1 cut(s) 452
Bst2UI CCWGG 2 cut(s) 464, 716
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 122
BstBI TTCGAA 1 cut(s) 101
BstC8I GCNNGC 3 cut(s) 55, 113, 279
BstDEI CTNAG 4 cut(s) 223, 250, 284, 351
BstF5I GGATG 2 cut(s) 380, 617
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 2 cut(s) 79, 203
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 6 cut(s) 12, 18, 83, 269, 278, 680
BstNI CCWGG 2 cut(s) 464, 716
BstSCI CCNGG 2 cut(s) 462, 714
BstV1I GCAGC 2 cut(s) 330, 494
BstV2I GAAGAC 1 cut(s) 465
BsuRI GGCC 1 cut(s) 597
BtsCI GGATG 2 cut(s) 380, 617
BtsIMutI CAGTG 2 cut(s) 70, 357
Cac8I GCNNGC 3 cut(s) 55, 113, 279
CfoI GCGC 2 cut(s) 79, 203
Cfr13I GGNCC 1 cut(s) 615
CsiI ACCWGGT 1 cut(s) 462
Csp6I GTAC 1 cut(s) 641
CviAII CATG 1 cut(s) 274
CviJI RGCY 5 cut(s) 32, 597, 674, 698, 714
CviKI_1 RGCY 5 cut(s) 32, 597, 674, 698, 714
CviQI GTAC 1 cut(s) 641
DdeI CTNAG 4 cut(s) 223, 250, 284, 351
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 595
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 452
Eco31I GGTCTC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 615
Eco47III AGCGCT 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 653
EcoRII CCWGG 2 cut(s) 462, 714
EcoT14I CCWWGG 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 452
FaeI CATG 1 cut(s) 277
FaiI YATR 5 cut(s) 275, 341, 639, 651, 666
FaqI GGGAC 1 cut(s) 53
FatI CATG 1 cut(s) 273
FauI CCCGC 2 cut(s) 79, 141
Fnu4HI GCNGC 6 cut(s) 13, 16, 19, 264, 319, 508
FokI GGATG 2 cut(s) 367, 624
Fsp4HI GCNGC 6 cut(s) 13, 16, 19, 264, 319, 508
FspBI CTAG 1 cut(s) 488
GlaI GCGC 2 cut(s) 78, 202
GluI GCNGC 6 cut(s) 13, 16, 19, 264, 319, 508
GsuI CTGGAG 2 cut(s) 129, 606
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 1 cut(s) 597
HhaI GCGC 2 cut(s) 79, 203
Hin1II CATG 1 cut(s) 277
Hin6I GCGC 2 cut(s) 77, 201
HinP1I GCGC 2 cut(s) 77, 201
HinfI GANTC 2 cut(s) 152, 389
HphI GGTGA 2 cut(s) 449, 718
Hpy188I TCNGA 2 cut(s) 174, 253
Hpy188III TCNNGA 6 cut(s) 38, 146, 290, 309, 353, 585
HpyAV CCTTC 4 cut(s) 147, 306, 317, 428
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 375, 510
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 18, 83, 269, 278, 680
HpyF3I CTNAG 4 cut(s) 223, 250, 284, 351
Hsp92II CATG 1 cut(s) 277
HspAI GCGC 2 cut(s) 77, 201
Kzo9I GATC 1 cut(s) 214
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 1 cut(s) 315
Lsp1109I GCAGC 2 cut(s) 330, 494
LweI GCATC 1 cut(s) 337
MabI ACCWGGT 1 cut(s) 462
MaeI CTAG 1 cut(s) 488
MaeIII GTNAC 1 cut(s) 543
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 4 cut(s) 109, 161, 218, 470
MhlI GDGCHC 2 cut(s) 55, 113
MlsI TGGCCA 1 cut(s) 597
MluCI AATT 8 cut(s) 91, 103, 162, 480, 501, 555, 599, 652
MluNI TGGCCA 1 cut(s) 597
MnlI CCTC 4 cut(s) 205, 259, 558, 601
Mox20I TGGCCA 1 cut(s) 597
MscI TGGCCA 1 cut(s) 597
MseI TTAA 2 cut(s) 237, 554
Msp20I TGGCCA 1 cut(s) 597
MspR9I CCNGG 2 cut(s) 464, 716
MvaI CCWGG 2 cut(s) 464, 716
MwoI GCNNNNNNNGC 6 cut(s) 12, 18, 83, 269, 278, 680
NdeII GATC 1 cut(s) 214
NlaIII CATG 1 cut(s) 277
NlaIV GGNNCC 1 cut(s) 617
NmuCI GTSAC 1 cut(s) 543
NspV TTCGAA 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 122
PfeI GAWTC 2 cut(s) 152, 389
PkrI GCNGC 6 cut(s) 14, 17, 20, 265, 320, 509
PsiI TTATAA 1 cut(s) 341
Psp6I CCWGG 2 cut(s) 462, 714
PspGI CCWGG 2 cut(s) 462, 714
PspN4I GGNNCC 1 cut(s) 617
PspPI GGNCC 1 cut(s) 615
RsaI GTAC 1 cut(s) 642
RsaNI GTAC 1 cut(s) 641
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 2 cut(s) 237, 554
SatI GCNGC 6 cut(s) 13, 16, 19, 264, 319, 508
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 1 cut(s) 615
ScrFI CCNGG 2 cut(s) 464, 716
SduI GDGCHC 2 cut(s) 55, 113
SetI ASST 6 cut(s) 229, 328, 439, 465, 646, 676
SexAI ACCWGGT 1 cut(s) 462
SfaNI GCATC 1 cut(s) 337
SfuI TTCGAA 1 cut(s) 101
SinI GGWCC 1 cut(s) 615
Sse9I AATT 8 cut(s) 91, 103, 162, 480, 501, 555, 599, 652
SsiI CCGC 6 cut(s) 12, 15, 18, 86, 134, 264
SspMI CTAG 1 cut(s) 488
StyD4I CCNGG 2 cut(s) 462, 714
StyI CCWWGG 1 cut(s) 452
TaaI ACNGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 101
TasI AATT 8 cut(s) 91, 103, 162, 480, 501, 555, 599, 652
TauI GCSGC 4 cut(s) 15, 18, 21, 266
TfiI GAWTC 2 cut(s) 152, 389
Tru1I TTAA 2 cut(s) 237, 554
Tru9I TTAA 2 cut(s) 237, 554
TscAI CASTG 2 cut(s) 70, 364
TseFI GTSAC 1 cut(s) 543
TseI GCWGC 2 cut(s) 318, 507
Tsp45I GTSAC 1 cut(s) 543
TspDTI ATGAA 4 cut(s) 378, 447, 592, 681
TspRI CASTG 2 cut(s) 70, 364
VpaK11BI GGWCC 1 cut(s) 615
XapI RAATTY 3 cut(s) 103, 162, 501
XspI CTAG 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.