Rh2DG694300

May serve as docking site to facilitate the association of other proteins to the plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014969
Physical Location & Seq
Forward (+)
91052369 .. 91055990
3622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG694300.1

Sequence Viewer

Length: 330 bp
ATGCCGGAGGAGGACTTGGTCGAGCTCAAGTTCCGACTCTATGACGGATCGGATATCGGTCCTTTCCGCTACTCCCCGGCCTCTACAGTGGCAACGCTTAAGGAGAGAATCGTCACCGAGTGGCCTAAAGATAAAAAAATTTCACCAAAAGGAGCAAACGACATAAAATTGATAAATGCTGGGAAGATCTTGGAAAACAACAAGACTGTTGGCCAGTGTAGAGTACCATTTGGAGAGCTTCCAAGAGGAATTATCACCATGCATGTTGTTGTTCAGCCTTCTGTAGCAAAAGCAAAAACAGGTAGATTTCATCCTCAGTTAATTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

109

Amino Acids

12.15

Weight (kDa)

9.52

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD_2 PF13881 5 - 101 1.2e-40 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26980
fragaria_vesca FvH4_6g53910
malus_domestica MD09G1007300.v1.1 MD17G1011200.v1.1
prunus_persica Prupe.3G309700_v2.0.a1
pyrus_communis pycom111g00560 pycom17g00590
rosa_chinensis RchiOBHm_Chr2g0176071
rosa_laevigata RLG00000022378
rosa_roxburghii Rroxscaffold_2G00076790
rosa_rugosa Rorug02G0590200
rosa_samantha Rh2AG669000 Rh2BG680600 Rh2CG643500 Rh2DG694300
rosa_wichuraiana Rw2G054870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 67
AclWI GGATC 1 cut(s) 55
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 1 cut(s) 138
AdeI CACNNNGTG 1 cut(s) 120
AfaI GTAC 1 cut(s) 225
AflII CTTAAG 1 cut(s) 98
AluBI AGCT 2 cut(s) 25, 238
AluI AGCT 2 cut(s) 25, 238
Alw21I GWGCWC 1 cut(s) 27
AlwI GGATC 1 cut(s) 55
AoxI GGCC 3 cut(s) 78, 122, 211
ApoI RAATTY 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 59
AsuC2I CCSGG 1 cut(s) 77
AsuHPI GGTGA 3 cut(s) 106, 135, 247
AvaII GGWCC 1 cut(s) 59
BalI TGGCCA 1 cut(s) 213
BanII GRGCYC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 27
BcnI CCSGG 1 cut(s) 77
BfmI CTRYAG 2 cut(s) 84, 282
BfrI CTTAAG 1 cut(s) 98
BglII AGATCT 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 77
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 23
BseYI CCCAGC 1 cut(s) 179
BshFI GGCC 3 cut(s) 80, 124, 213
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 2 cut(s) 5, 77
BsnI GGCC 3 cut(s) 80, 124, 213
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 2 cut(s) 47, 186
BspACI CCGC 1 cut(s) 67
BspANI GGCC 3 cut(s) 80, 124, 213
BspCNI CTCAG 1 cut(s) 328
BspPI GGATC 1 cut(s) 55
BspTI CTTAAG 1 cut(s) 98
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 2 cut(s) 47, 186
Bst4CI ACNGT 2 cut(s) 88, 208
BstAFI CTTAAG 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 315
BstF5I GGATG 1 cut(s) 310
BstKTI GATC 2 cut(s) 50, 189
BstMBI GATC 2 cut(s) 47, 186
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 75
BstSFI CTRYAG 2 cut(s) 84, 282
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BsuRI GGCC 3 cut(s) 80, 124, 213
BtsCI GGATG 1 cut(s) 310
BtsIMutI CAGTG 2 cut(s) 93, 221
Cfr13I GGNCC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 224
CviAII CATG 2 cut(s) 259, 263
CviJI RGCY 6 cut(s) 25, 80, 124, 213, 238, 277
CviKI_1 RGCY 6 cut(s) 25, 80, 124, 213, 238, 277
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 1 cut(s) 315
DpnI GATC 2 cut(s) 49, 188
DpnII GATC 2 cut(s) 47, 186
DraIII CACNNNGTG 1 cut(s) 120
EaeI YGGCCR 1 cut(s) 211
Ecl136II GAGCTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 27
Eco32I GATATC 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 59
Eco53kI GAGCTC 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 25
EcoRV GATATC 1 cut(s) 55
EcoT22I ATGCAT 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 2 cut(s) 262, 266
FaiI YATR 4 cut(s) 42, 164, 260, 264
FatI CATG 2 cut(s) 258, 262
FokI GGATG 1 cut(s) 297
FriOI GRGCYC 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 183
HaeIII GGCC 3 cut(s) 80, 124, 213
HapII CCGG 2 cut(s) 5, 77
Hin1II CATG 2 cut(s) 262, 266
HinfI GANTC 2 cut(s) 36, 108
HpaII CCGG 2 cut(s) 5, 77
HphI GGTGA 3 cut(s) 106, 135, 247
Hpy188I TCNGA 2 cut(s) 35, 52
HpyAV CCTTC 1 cut(s) 288
HpyCH4III ACNGT 2 cut(s) 88, 208
HpyCH4V TGCA 1 cut(s) 262
HpyF3I CTNAG 1 cut(s) 315
Hsp92II CATG 2 cut(s) 262, 266
Kzo9I GATC 2 cut(s) 47, 186
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 5 cut(s) 18, 90, 165, 227, 285
MaeIII GTNAC 1 cut(s) 112
MalI GATC 2 cut(s) 49, 188
MboI GATC 2 cut(s) 47, 186
MboII GAAGA 1 cut(s) 196
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 213
MluCI AATT 4 cut(s) 138, 167, 249, 321
MluNI TGGCCA 1 cut(s) 213
MlyI GAGTC 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 4 cut(s) 4, 91, 239, 324
Mox20I TGGCCA 1 cut(s) 213
Mph1103I ATGCAT 1 cut(s) 264
MscI TGGCCA 1 cut(s) 213
MseI TTAA 3 cut(s) 99, 320, 328
Msp20I TGGCCA 1 cut(s) 213
MspCI CTTAAG 1 cut(s) 98
MspI CCGG 2 cut(s) 5, 77
MspR9I CCNGG 1 cut(s) 77
NciI CCSGG 1 cut(s) 77
NdeII GATC 2 cut(s) 47, 186
NlaIII CATG 2 cut(s) 262, 266
NmuCI GTSAC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 264
NspI RCATGY 1 cut(s) 266
PfeI GAWTC 1 cut(s) 108
PflFI GACNNNGTC 1 cut(s) 17
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 179
PspPI GGNCC 1 cut(s) 59
PsuI RGATCY 1 cut(s) 186
PsyI GACNNNGTC 1 cut(s) 17
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 3 cut(s) 99, 320, 328
Sau3AI GATC 2 cut(s) 47, 186
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 1 cut(s) 77
SduI GDGCHC 1 cut(s) 27
SetI ASST 3 cut(s) 27, 240, 304
SfcI CTRYAG 2 cut(s) 84, 282
SinI GGWCC 1 cut(s) 59
SmlI CTYRAG 2 cut(s) 26, 98
SmoI CTYRAG 2 cut(s) 26, 98
Sse9I AATT 4 cut(s) 138, 167, 249, 321
SsiI CCGC 1 cut(s) 67
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 75
TaaI ACNGT 2 cut(s) 88, 208
TaqI TCGA 1 cut(s) 21
TaqII GACCGA 1 cut(s) 47
TasI AATT 4 cut(s) 138, 167, 249, 321
TfiI GAWTC 1 cut(s) 108
Tru1I TTAA 3 cut(s) 99, 320, 328
Tru9I TTAA 3 cut(s) 99, 320, 328
TscAI CASTG 2 cut(s) 93, 221
TseFI GTSAC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 299
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 2 cut(s) 93, 221
Tth111I GACNNNGTC 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 59
XapI RAATTY 1 cut(s) 138
XceI RCATGY 1 cut(s) 266
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.