Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011084

Physical Location & Seq

Genomic Coordinates Reverse (-)

9952479 .. 9955982

Gene Structure 3504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G27000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGACAACAAAAACGTCGTCGTTTGCGACAACGGCACCGGTTATGTAAAATGTGGATTTGCTGGAGAGAATTTCCCAACGTCTGTTTTCCCCTGTGTCGTGGGAAGGCCATTGCTTCGGTATGAAGAATCACTCATGGAGCAACAAGTCAAGGATATAGTTGTTGGGGAGACTTGCTCTGAGCTCCGGCATCAATTGGATATAAATTATCCTGTCCACAATGGTATTGTGCAGAATTGGGATGATATGGAACATGTTTGGGATCATGCTTTCTATAACGAATTGAAAATCAATCCATCTGACTGTAAGATATTGCTCACGGATCCACCTCTTAATCCGTCCAAGAATCGTGAAAAAATGATTGAGACAATGTTTGAGAAATACAATTTCGCTGGCGTTTTCATTCAAATCCAAGCCGTTTTGACTCTCTATGCTCAAGGTTTGCTAACTGGTTTGGTTATTGATTCTGGTGATGGTGTTACTCATGTGGTTCCGGTGGTTGACGGCTACTCGTTCCCTCATCTTACTAAAAGAATGAATGTTGCTGGCAGACACATAACAGCATATCTCGTTGATCTACTATCTCGACGAGGATATGCGATGAACAAAACAGCTGACTTTGAGACGGTTAGGGAAATTAAAGAGAAGCTCTGCTATATAAGTTATGATTACAAGAGAGAATCTCAGCTTGGCCTTGAGACAACTATCCTTGTTAAGAATTATACTCTTCCAGATGGGAGGGTTATCAAAGTAGGCACTGAAAGATTCCAAGCACCTGAAGCGCTTTTTACTCCGGAACTCATTGATGTTGAAGGTGATGGAATGGCAGACATGGTTTTCCGATGTATTCAAGAAATGGATATTGATAACCGCATGATGCTCTACCAACACATAGTTTTAAGCGGAGGTAGCACCATGTACCCAGGATTACCTAGCCGTCTTGAGAAAGAAATACAGGATCGGTATCTCGACACAGTTCTAAAAGGAAACAAAGATGGCTTGAAGAAACTCAGATTGCGGATCGAAGATCCACCGAGAAGGAAACACATGGTATACCTCGGAGGTGCTGTTCTTGCAGGAATCATGAAGGACGCACCAGAGTTCTGGATCAATAGAGAGGACTATATGGAAGAAGGAATTAATTGTTTGAATAAAATGAGCCAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0009653 GO:0009825 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015629 GO:0016043 GO:0016049 GO:0030029 GO:0030036 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0097435

KEGG Pathways

Metabolic & Signaling

ko04138 ko04530 map04138 map04530

Pfam Domains

Protein Families

Actin

Protein Analysis

389

Amino Acids

44.36

Weight (kDa)

5.41

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	2 - 385	2.8e-98	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27000
fragaria_vesca	FvH4_6g53870
malus_domestica	MD09G1007700.v1.1 MD17G1011600.v1.1
prunus_persica	Prupe.3G309300_v2.0.a1 Prupe.3G309300_v2.0.a1
pyrus_communis	pycom111g00600 pycom17g00630
rosa_chinensis	RchiOBHm_Chr2g0176031
rosa_laevigata	RLG00000022374
rosa_multiflora	Rmu_sc0011610.1_g000002 Rmu_sc0012513.1_g000004 Rmu_sc0012513.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076840
rosa_rugosa	Rorug02G0589600 Rorug02G0589700
rosa_samantha	Rh2AG668600 Rh2CG643100 Rh2DG693900
rosa_wichuraiana	Rw2G054830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	35
AccI	GTMKAC	1 cut(s)	1053
AccIII	TCCGGA	1 cut(s)	793
AciI	CCGC	3 cut(s)	871, 903, 1018
AclWI	GGATC	7 cut(s)	270, 317, 330, 966, 1022, 1028, 1115
AcsI	RAATTY	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	798
AfaI	GTAC	1 cut(s)	920
AfeI	AGCGCT	1 cut(s)	783
AflIII	ACRYGT	1 cut(s)	253
AgeI	ACCGGT	1 cut(s)	38
AgsI	TTSAA	6 cut(s)	286, 407, 812, 851, 1003, 1150
AjnI	CCWGG	1 cut(s)	922
AjuI	GAANNNNNNNTTGG	2 cut(s)	672, 704
AloI	GAACNNNNNNTCC	2 cut(s)	1053, 1085
AluBI	AGCT	5 cut(s)	184, 614, 649, 688, 1166
AluI	AGCT	5 cut(s)	184, 614, 649, 688, 1166
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	4 cut(s)	164, 359, 617, 692
AlwI	GGATC	7 cut(s)	270, 317, 330, 966, 1022, 1028, 1115
Aor13HI	TCCGGA	1 cut(s)	793
Aor51HI	AGCGCT	1 cut(s)	783
AoxI	GGCC	2 cut(s)	107, 691
ApoI	RAATTY	1 cut(s)	70
ArsI	GACNNNNNNTTYG	1 cut(s)	35
AseI	ATTAAT	1 cut(s)	1140
AsiGI	ACCGGT	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	784
AsuHPI	GGTGA	2 cut(s)	482, 827
BamHI	GGATCC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	186
BccI	CCATC	5 cut(s)	304, 467, 728, 812, 989
BceAI	ACGGC	4 cut(s)	49, 401, 520, 921
BciT130I	CCWGG	1 cut(s)	924
BcoDI	GTCTC	4 cut(s)	164, 359, 617, 692
BfaI	CTAG	1 cut(s)	933
BfoI	RGCGCY	1 cut(s)	785
Bme1390I	CCNGG	1 cut(s)	924
BmiI	GGNNCC	3 cut(s)	37, 324, 492
BmrFI	CCNGG	1 cut(s)	924
BmsI	GCATC	2 cut(s)	199, 867
BplI	GAGNNNNNCTC	4 cut(s)	161, 193, 667, 699
BpmI	CTGGAG	1 cut(s)	84
BpuEI	CTTGAG	3 cut(s)	420, 716, 962
BsaBI	GATNNNNATC	1 cut(s)	963
BsaJI	CCNNGG	2 cut(s)	922, 1057
BsaWI	WCCGGW	3 cut(s)	38, 493, 793
BsaXI	ACNNNNNCTCC	2 cut(s)	1053, 1083
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	454
Bse3DI	GCAATG	1 cut(s)	110
Bse8I	GATNNNNATC	1 cut(s)	963
BseAI	TCCGGA	1 cut(s)	793
BseBI	CCWGG	1 cut(s)	924
BseDI	CCNNGG	2 cut(s)	922, 1057
BseGI	GGATG	1 cut(s)	247
BseJI	GATNNNNATC	1 cut(s)	963
BseMI	GCAATG	1 cut(s)	110
BseMII	CTCAG	3 cut(s)	171, 698, 1024
BseNI	ACTGG	1 cut(s)	454
BsgI	GTGCAG	1 cut(s)	251
BshFI	GGCC	2 cut(s)	109, 693
BshNI	GGYRCC	1 cut(s)	35
BshTI	ACCGGT	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	4 cut(s)	39, 187, 494, 794
BsmAI	GTCTC	4 cut(s)	164, 359, 617, 692
BsmBI	CGTCTC	1 cut(s)	617
BsnI	GGCC	2 cut(s)	109, 693
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp13I	TCCGGA	1 cut(s)	793
Bsp143I	GATC	7 cut(s)	262, 322, 574, 958, 1020, 1027, 1107
BspACI	CCGC	3 cut(s)	871, 903, 1018
BspANI	GGCC	2 cut(s)	109, 693
BspCNI	CTCAG	3 cut(s)	172, 697, 1023
BspEI	TCCGGA	1 cut(s)	793
BspHI	TCATGA	1 cut(s)	1083
BspLI	GGNNCC	3 cut(s)	37, 324, 492
BspPI	GGATC	7 cut(s)	270, 317, 330, 966, 1022, 1028, 1115
BspT107I	GGYRCC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	454
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	922, 1057
BssMI	GATC	7 cut(s)	262, 322, 574, 958, 1020, 1027, 1107
BssNAI	GTATAC	1 cut(s)	1054
Bst1107I	GTATAC	1 cut(s)	1054
Bst2UI	CCWGG	1 cut(s)	924
Bst4CI	ACNGT	3 cut(s)	305, 628, 976
Bst6I	CTCTTC	1 cut(s)	732
BstC8I	GCNNGC	2 cut(s)	394, 547
BstDEI	CTNAG	3 cut(s)	180, 684, 1010
BstF5I	GGATG	1 cut(s)	247
BstH2I	RGCGCY	1 cut(s)	785
BstHHI	GCGC	1 cut(s)	784
BstKTI	GATC	7 cut(s)	265, 325, 577, 961, 1023, 1030, 1110
BstMAI	GTCTC	4 cut(s)	164, 359, 617, 692
BstMBI	GATC	7 cut(s)	262, 322, 574, 958, 1020, 1027, 1107
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 779, 909, 1073
BstNI	CCWGG	1 cut(s)	924
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	922
BstX2I	RGATCY	2 cut(s)	322, 1027
BstXI	CCANNNNNNTGG	1 cut(s)	1104
BstYI	RGATCY	2 cut(s)	322, 1027
BstZ17I	GTATAC	1 cut(s)	1054
BsuRI	GGCC	2 cut(s)	109, 693
BtgZI	GCGATG	1 cut(s)	614
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	756
Cac8I	GCNNGC	2 cut(s)	394, 547
CciI	TCATGA	1 cut(s)	1083
CfoI	GCGC	1 cut(s)	784
Cfr10I	RCCGGY	1 cut(s)	38
CseI	GACGC	1 cut(s)	1100
Csp6I	GTAC	1 cut(s)	919
CspAI	ACCGGT	1 cut(s)	38
CviAII	CATG	9 cut(s)	136, 254, 266, 485, 832, 874, 916, 1048, 1084
CviQI	GTAC	1 cut(s)	919
DdeI	CTNAG	3 cut(s)	180, 684, 1010
DpnI	GATC	7 cut(s)	264, 324, 576, 960, 1022, 1029, 1109
DpnII	GATC	7 cut(s)	262, 322, 574, 958, 1020, 1027, 1107
Eam1104I	CTCTTC	1 cut(s)	732
EarI	CTCTTC	1 cut(s)	732
Ecl136II	GAGCTC	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	186
Eco47III	AGCGCT	1 cut(s)	783
Eco53kI	GAGCTC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	798
EcoICRI	GAGCTC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	922
EcoT38I	GRGCYC	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	617
FaeI	CATG	9 cut(s)	139, 257, 269, 488, 835, 877, 919, 1051, 1087
FatI	CATG	9 cut(s)	135, 253, 265, 484, 831, 873, 915, 1047, 1083
FblI	GTMKAC	1 cut(s)	1053
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	186
FspBI	CTAG	1 cut(s)	933
GlaI	GCGC	1 cut(s)	783
GsuI	CTGGAG	1 cut(s)	84
HaeII	RGCGCY	1 cut(s)	785
HaeIII	GGCC	2 cut(s)	109, 693
HapII	CCGG	4 cut(s)	39, 187, 494, 794
HgaI	GACGC	1 cut(s)	1100
HhaI	GCGC	1 cut(s)	784
Hin1II	CATG	9 cut(s)	139, 257, 269, 488, 835, 877, 919, 1051, 1087
Hin6I	GCGC	1 cut(s)	782
HinP1I	GCGC	1 cut(s)	782
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	1164
HinfI	GANTC	7 cut(s)	128, 346, 424, 464, 680, 765, 1080
HpaII	CCGG	4 cut(s)	39, 187, 494, 794
HphI	GGTGA	2 cut(s)	482, 827
Hpy166II	GTNNAC	3 cut(s)	217, 502, 1054
Hpy188I	TCNGA	5 cut(s)	181, 301, 842, 1013, 1061
Hpy188III	TCNNGA	9 cut(s)	350, 585, 731, 794, 851, 941, 968, 1084, 1105
Hpy8I	GTNNAC	3 cut(s)	217, 502, 1054
Hpy99I	CGWCG	3 cut(s)	20, 23, 591
HpyAV	CCTTC	5 cut(s)	99, 806, 1032, 1081, 1127
HpyCH4III	ACNGT	3 cut(s)	305, 628, 976
HpyCH4IV	ACGT	2 cut(s)	15, 80
HpyCH4V	TGCA	2 cut(s)	232, 1076
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 779, 909, 1073
HpyF3I	CTNAG	3 cut(s)	180, 684, 1010
HpySE526I	ACGT	2 cut(s)	15, 80
Hsp92II	CATG	9 cut(s)	139, 257, 269, 488, 835, 877, 919, 1051, 1087
HspAI	GCGC	1 cut(s)	782
Kpn2I	TCCGGA	1 cut(s)	793
Kzo9I	GATC	7 cut(s)	262, 322, 574, 958, 1020, 1027, 1107
LmnI	GCTCC	2 cut(s)	139, 189
LweI	GCATC	2 cut(s)	199, 867
MaeI	CTAG	1 cut(s)	933
MaeII	ACGT	2 cut(s)	15, 80
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	7 cut(s)	264, 324, 576, 960, 1022, 1029, 1109
MboI	GATC	7 cut(s)	262, 322, 574, 958, 1020, 1027, 1107
MboII	GAAGA	5 cut(s)	137, 719, 1015, 1037, 1142
MfeI	CAATTG	1 cut(s)	194
MflI	RGATCY	2 cut(s)	322, 1027
MhlI	GDGCHC	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	418
MnlI	CCTC	8 cut(s)	339, 528, 584, 732, 899, 1055, 1067, 1111
MroI	TCCGGA	1 cut(s)	793
MseI	TTAA	6 cut(s)	333, 639, 714, 899, 1140, 1168
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	4 cut(s)	39, 187, 494, 794
MspR9I	CCNGG	1 cut(s)	924
MunI	CAATTG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	924
MwoI	GCNNNNNNNGC	4 cut(s)	33, 779, 909, 1073
NdeII	GATC	7 cut(s)	262, 322, 574, 958, 1020, 1027, 1107
NlaIII	CATG	9 cut(s)	139, 257, 269, 488, 835, 877, 919, 1051, 1087
NlaIV	GGNNCC	3 cut(s)	37, 324, 492
NspI	RCATGY	1 cut(s)	257
PagI	TCATGA	1 cut(s)	1083
PciI	ACATGT	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PfeI	GAWTC	6 cut(s)	128, 346, 464, 680, 765, 1080
PinAI	ACCGGT	1 cut(s)	38
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
PscI	ACATGT	1 cut(s)	253
PshBI	ATTAAT	1 cut(s)	1140
Psp124BI	GAGCTC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	922
PspGI	CCWGG	1 cut(s)	922
PspN4I	GGNNCC	3 cut(s)	37, 324, 492
PsuI	RGATCY	2 cut(s)	322, 1027
PvuII	CAGCTG	1 cut(s)	614
RsaI	GTAC	1 cut(s)	920
RsaNI	GTAC	1 cut(s)	919
SacI	GAGCTC	1 cut(s)	186
SaqAI	TTAA	6 cut(s)	333, 639, 714, 899, 1140, 1168
Sau3AI	GATC	7 cut(s)	262, 322, 574, 958, 1020, 1027, 1107
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	924
SduI	GDGCHC	1 cut(s)	186
SfaNI	GCATC	2 cut(s)	199, 867
SmlI	CTYRAG	3 cut(s)	435, 695, 941
SmoI	CTYRAG	3 cut(s)	435, 695, 941
SsiI	CCGC	3 cut(s)	871, 903, 1018
SspMI	CTAG	1 cut(s)	933
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	922
TaaI	ACNGT	3 cut(s)	305, 628, 976
TaiI	ACGT	2 cut(s)	18, 83
TaqI	TCGA	3 cut(s)	586, 969, 1023
TfiI	GAWTC	6 cut(s)	128, 346, 464, 680, 765, 1080
Tru1I	TTAA	6 cut(s)	333, 639, 714, 899, 1140, 1168
Tru9I	TTAA	6 cut(s)	333, 639, 714, 899, 1140, 1168
TscAI	CASTG	1 cut(s)	763
TspDTI	ATGAA	5 cut(s)	138, 391, 551, 617, 1100
TspGWI	ACGGA	2 cut(s)	327, 335
TspRI	CASTG	1 cut(s)	763
VspI	ATTAAT	1 cut(s)	1140
XapI	RAATTY	1 cut(s)	70
XceI	RCATGY	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	1053
XspI	CTAG	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.