Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011084

Physical Location & Seq

Genomic Coordinates Forward (+)

82936359 .. 82940030

Gene Structure 3672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022374

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGAACAACCGCAAAGTCGTCGTCTGCGACAACGGCACCGGATATGTGAAATGTGGGTTTGCCGGAGAGAACTTCCCTACATCTGTGTTCCCCTGCGTAGTTGGAAGGCCGTTGCTTCGCTATGAGGAATCACTCATGGAACAAGAAATCAAGGATATTATTGTGGGGGAAGCTTGCGCAGAGTTTCGACACCAATTGGAGATAAACTACCCTGTTAACAATGGCATTGTGCAGAACTGGGATGATATGGGTCATGTCTGGGATCATGCATTCTATAGTGAGCTAAAAATAGATCCTACTGAATGCCATATATTACTCACAGACCCTCCTCTCAATCCCTTGAAGAACCGCGAAAAGATGATCGAGACCATGTTTGAGAAGTACAATTTTGCTGGCGTCTTCATTCAAATTCAAGCTGTTTTAACACTGTATGCTCAAGGATTGCTGACAGGATTAGTTATTGACTCTGGTGATGGCGTTACTCATGTGGTTCCAGTTGTTGATGGCTACTCATTTCCTCATCTTACAAAGCGAATGAATGTAGCTGGCCGGCACATAACATCCTATCTTGTTGATTTGCTCTCACGGAGGGGGTATGCAATGAATAGGACGGCTGATTTTGAGAGTGTTAGGGAAATCAAAGAGAAGCTCTGCTATATAAGTTATGATTACAAAAGGGAGTATCAATTAGGACTGGAGACAACCATACTTGTAAAGAATTACACTCTGCCAGATGGAAGGGTGATCAAAGTCGGCACTGAAAGGTTCCAGGCTCCCGAGGCTCTTTTCACACCTGAACTTATAGATGTTGAAGGTGATGGGATGGCTGACATGGTGTTCCGCTGCATTCAGGAAATGGATATTGACAATAGGATGATGCTTTACCAGCATATAGTTTTAAGTGGAGGGAGCACGATGTATCCTGGATTACCCAGTCGTTTGGAGAAAGAAATTTCTGATCGTTATCTTGACGTTGTTTTGAAGGGTAACAAGGATGGATTGAAGAAGTTGCGTTTGCGAATCGAAGATCCTCCGCGAAGAAAGCACATGGTGTATCTAGGTGGTGCAGTCCTTGCTGGAATCATGAAGGATGCTCCTGAATTTTGGATTACAAGGGAGGATTATCTAGAAGAAGGAGTTGCTTGTCTAAGCAAGTGTGGTCAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0009653 GO:0009825 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015629 GO:0016043 GO:0016049 GO:0030029 GO:0030036 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0097435

KEGG Pathways

Metabolic & Signaling

ko04138 ko04530 map04138 map04530

Pfam Domains

Protein Families

Actin

Protein Analysis

390

Amino Acids

44.26

Weight (kDa)

5.42

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	4 - 383	2.4e-96	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27000
fragaria_vesca	FvH4_6g53870
malus_domestica	MD09G1007700.v1.1 MD17G1011600.v1.1
prunus_persica	Prupe.3G309300_v2.0.a1 Prupe.3G309300_v2.0.a1
pyrus_communis	pycom111g00600 pycom17g00630
rosa_chinensis	RchiOBHm_Chr2g0176031
rosa_laevigata	RLG00000022374
rosa_multiflora	Rmu_sc0011610.1_g000002 Rmu_sc0012513.1_g000004 Rmu_sc0012513.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076840
rosa_rugosa	Rorug02G0589600 Rorug02G0589700
rosa_samantha	Rh2AG668600 Rh2CG643100 Rh2DG693900
rosa_wichuraiana	Rw2G054830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	178
AccB1I	GGYRCC	1 cut(s)	35
AccII	CGCG	2 cut(s)	351, 1036
AciI	CCGC	4 cut(s)	10, 349, 841, 1034
AclWI	GGATC	3 cut(s)	270, 287, 1022
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	3 cut(s)	408, 951, 1100
AcyI	GRCGYC	1 cut(s)	396
AdeI	CACNNNGTG	1 cut(s)	1051
AfaI	GTAC	1 cut(s)	383
AgsI	TTSAA	6 cut(s)	343, 407, 413, 812, 982, 1003
AjnI	CCWGG	2 cut(s)	768, 922
AluBI	AGCT	5 cut(s)	173, 283, 416, 545, 649
AluI	AGCT	5 cut(s)	173, 283, 416, 545, 649
Alw21I	GWGCWC	1 cut(s)	914
Alw26I	GTCTC	2 cut(s)	359, 692
AlwI	GGATC	3 cut(s)	270, 287, 1022
Ama87I	CYCGRG	1 cut(s)	776
AoxI	GGCC	2 cut(s)	107, 547
ApeKI	GCWGC	1 cut(s)	843
ApoI	RAATTY	3 cut(s)	408, 951, 1100
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	179
AsuHPI	GGTGA	3 cut(s)	482, 754, 827
AvaI	CYCGRG	1 cut(s)	776
BanI	GGYRCC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	914
BbvI	GCAGC	1 cut(s)	830
BccI	CCATC	6 cut(s)	467, 497, 728, 812, 817, 989
BceAI	ACGGC	3 cut(s)	49, 94, 627
BcgI	CGANNNNNNTGC	1 cut(s)	35
BciT130I	CCWGG	2 cut(s)	770, 924
BciVI	GTATCC	1 cut(s)	930
BclI	TGATCA	1 cut(s)	744
BcoDI	GTCTC	2 cut(s)	359, 692
BfaI	CTAG	2 cut(s)	1058, 1127
BfmI	CTRYAG	1 cut(s)	274
BfuI	GTATCC	1 cut(s)	930
BisI	GCNGC	1 cut(s)	844
BlsI	GCNGC	1 cut(s)	845
Bme1390I	CCNGG	2 cut(s)	770, 924
BmeT110I	CYCGRG	1 cut(s)	776
BmiI	GGNNCC	4 cut(s)	37, 492, 767, 774
BmrFI	CCNGG	2 cut(s)	770, 924
BmrI	ACTGGG	2 cut(s)	247, 927
BmsI	GCATC	2 cut(s)	867, 1081
BmuI	ACTGGG	2 cut(s)	247, 927
BpiI	GAAGAC	1 cut(s)	391
BpmI	CTGGAG	1 cut(s)	716
BpuEI	CTTGAG	1 cut(s)	420
BsaBI	GATNNNNATC	1 cut(s)	963
BsaHI	GRCGYC	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	777
BsaWI	WCCGGW	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bse118I	RCCGGY	1 cut(s)	549
Bse1I	ACTGG	4 cut(s)	242, 494, 699, 933
Bse3DI	GCAATG	1 cut(s)	606
Bse8I	GATNNNNATC	1 cut(s)	963
BseBI	CCWGG	2 cut(s)	770, 924
BseDI	CCNNGG	1 cut(s)	777
BseGI	GGATG	6 cut(s)	247, 560, 828, 879, 1000, 1096
BseJI	GATNNNNATC	1 cut(s)	963
BseMI	GCAATG	1 cut(s)	606
BseNI	ACTGG	4 cut(s)	242, 494, 699, 933
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	830
BsgI	GTGCAG	2 cut(s)	251, 1086
Bsh1236I	CGCG	2 cut(s)	351, 1036
BshFI	GGCC	2 cut(s)	109, 549
BshNI	GGYRCC	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	914
BsiHKCI	CYCGRG	1 cut(s)	776
BsiSI	CCGG	3 cut(s)	39, 63, 550
BsmAI	GTCTC	2 cut(s)	359, 692
BsmI	GAATGC	3 cut(s)	269, 308, 846
BsnI	GGCC	2 cut(s)	109, 549
Bso31I	GGTCTC	1 cut(s)	359
BsoBI	CYCGRG	1 cut(s)	776
Bsp1286I	GDGCHC	1 cut(s)	914
Bsp143I	GATC	6 cut(s)	262, 292, 360, 744, 958, 1027
BspACI	CCGC	4 cut(s)	10, 349, 841, 1034
BspANI	GGCC	2 cut(s)	109, 549
BspFNI	CGCG	2 cut(s)	351, 1036
BspHI	TCATGA	1 cut(s)	1083
BspLI	GGNNCC	4 cut(s)	37, 492, 767, 774
BspPI	GGATC	3 cut(s)	270, 287, 1022
BspT107I	GGYRCC	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	606
BsrFI	RCCGGY	1 cut(s)	549
BsrI	ACTGG	4 cut(s)	242, 494, 699, 933
BssAI	RCCGGY	1 cut(s)	549
BssECI	CCNNGG	1 cut(s)	777
BssMI	GATC	6 cut(s)	262, 292, 360, 744, 958, 1027
BssNI	GRCGYC	1 cut(s)	396
Bst2UI	CCWGG	2 cut(s)	770, 924
Bst4CI	ACNGT	1 cut(s)	429
BstACI	GRCGYC	1 cut(s)	396
BstAPI	GCANNNNNTGC	1 cut(s)	1073
BstC8I	GCNNGC	4 cut(s)	175, 394, 547, 551
BstDEI	CTNAG	1 cut(s)	1148
BstF5I	GGATG	6 cut(s)	247, 560, 828, 879, 1000, 1096
BstFNI	CGCG	2 cut(s)	351, 1036
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	6 cut(s)	265, 295, 363, 747, 961, 1030
BstMAI	GTCTC	2 cut(s)	359, 692
BstMBI	GATC	6 cut(s)	262, 292, 360, 744, 958, 1027
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 779, 886, 1042, 1073
BstNI	CCWGG	2 cut(s)	770, 924
BstSCI	CCNGG	2 cut(s)	768, 922
BstSFI	CTRYAG	1 cut(s)	274
BstUI	CGCG	2 cut(s)	351, 1036
BstV1I	GCAGC	1 cut(s)	830
BstV2I	GAAGAC	1 cut(s)	391
BstX2I	RGATCY	2 cut(s)	292, 1027
BstXI	CCANNNNNNTGG	1 cut(s)	940
BstYI	RGATCY	2 cut(s)	292, 1027
BsuI	GTATCC	1 cut(s)	930
BsuRI	GGCC	2 cut(s)	109, 549
BtsCI	GGATG	6 cut(s)	247, 560, 828, 879, 1000, 1096
BtsIMutI	CAGTG	2 cut(s)	425, 756
Cac8I	GCNNGC	4 cut(s)	175, 394, 547, 551
CciI	TCATGA	1 cut(s)	1083
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	549
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	9 cut(s)	136, 254, 266, 370, 485, 832, 1048, 1084, 1167
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	1 cut(s)	1148
DpnI	GATC	6 cut(s)	264, 294, 362, 746, 960, 1029
DpnII	GATC	6 cut(s)	262, 292, 360, 744, 958, 1027
DraIII	CACNNNGTG	1 cut(s)	1051
EaeI	YGGCCR	1 cut(s)	547
Eco31I	GGTCTC	1 cut(s)	359
Eco88I	CYCGRG	1 cut(s)	776
EcoRII	CCWGG	2 cut(s)	768, 922
EcoT22I	ATGCAT	1 cut(s)	271
FaeI	CATG	9 cut(s)	139, 257, 269, 373, 488, 835, 1051, 1087, 1170
FatI	CATG	9 cut(s)	135, 253, 265, 369, 484, 831, 1047, 1083, 1166
FbaI	TGATCA	1 cut(s)	744
Fnu4HI	GCNGC	1 cut(s)	844
FokI	GGATG	6 cut(s)	254, 547, 835, 886, 1007, 1103
Fsp4HI	GCNGC	1 cut(s)	844
FspBI	CTAG	2 cut(s)	1058, 1127
FspI	TGCGCA	1 cut(s)	178
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	1 cut(s)	844
GsuI	CTGGAG	1 cut(s)	716
HaeIII	GGCC	2 cut(s)	109, 549
HapII	CCGG	3 cut(s)	39, 63, 550
HgaI	GACGC	1 cut(s)	385
HhaI	GCGC	1 cut(s)	179
Hin1I	GRCGYC	1 cut(s)	396
Hin1II	CATG	9 cut(s)	139, 257, 269, 373, 488, 835, 1051, 1087, 1170
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	4 cut(s)	128, 464, 1020, 1080
HpaI	GTTAAC	1 cut(s)	217
HpaII	CCGG	3 cut(s)	39, 63, 550
HphI	GGTGA	3 cut(s)	482, 754, 827
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	958
Hpy188III	TCNNGA	7 cut(s)	364, 776, 851, 968, 1084, 1097, 1127
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	6 cut(s)	99, 732, 806, 976, 1081, 1127
HpyCH4III	ACNGT	1 cut(s)	429
HpyCH4IV	ACGT	1 cut(s)	972
HpyCH4V	TGCA	5 cut(s)	232, 269, 599, 846, 1067
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 779, 886, 1042, 1073
HpyF3I	CTNAG	1 cut(s)	1148
HpySE526I	ACGT	1 cut(s)	972
Hsp92I	GRCGYC	1 cut(s)	396
Hsp92II	CATG	9 cut(s)	139, 257, 269, 373, 488, 835, 1051, 1087, 1170
HspAI	GCGC	1 cut(s)	177
KroI	GCCGGC	1 cut(s)	549
KroNI	GCCGGC	1 cut(s)	551
Ksp22I	TGATCA	1 cut(s)	744
KspAI	GTTAAC	1 cut(s)	217
Kzo9I	GATC	6 cut(s)	262, 292, 360, 744, 958, 1027
LmnI	GCTCC	3 cut(s)	778, 909, 1099
Lsp1109I	GCAGC	1 cut(s)	830
LweI	GCATC	2 cut(s)	867, 1081
MaeI	CTAG	2 cut(s)	1058, 1127
MaeII	ACGT	1 cut(s)	972
MaeIII	GTNAC	2 cut(s)	478, 986
MalI	GATC	6 cut(s)	264, 294, 362, 746, 960, 1029
MboI	GATC	6 cut(s)	262, 292, 360, 744, 958, 1027
MboII	GAAGA	6 cut(s)	355, 391, 1015, 1037, 1050, 1142
MfeI	CAATTG	1 cut(s)	194
MflI	RGATCY	2 cut(s)	292, 1027
MhlI	GDGCHC	1 cut(s)	914
MluCI	AATT	7 cut(s)	194, 385, 408, 686, 718, 951, 1100
MlyI	GAGTC	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	9 cut(s)	118, 336, 339, 528, 582, 772, 899, 1041, 1111
Mph1103I	ATGCAT	1 cut(s)	271
MroNI	GCCGGC	1 cut(s)	549
MseI	TTAA	3 cut(s)	216, 422, 899
MspA1I	CMGCKG	1 cut(s)	843
MspI	CCGG	3 cut(s)	39, 63, 550
MspR9I	CCNGG	2 cut(s)	770, 924
MunI	CAATTG	1 cut(s)	194
Mva1269I	GAATGC	3 cut(s)	269, 308, 846
MvaI	CCWGG	2 cut(s)	770, 924
MvnI	CGCG	2 cut(s)	351, 1036
MwoI	GCNNNNNNNGC	5 cut(s)	33, 779, 886, 1042, 1073
NaeI	GCCGGC	1 cut(s)	551
NdeII	GATC	6 cut(s)	262, 292, 360, 744, 958, 1027
NgoMIV	GCCGGC	1 cut(s)	549
NlaIII	CATG	9 cut(s)	139, 257, 269, 373, 488, 835, 1051, 1087, 1170
NlaIV	GGNNCC	4 cut(s)	37, 492, 767, 774
NsbI	TGCGCA	1 cut(s)	178
NsiI	ATGCAT	1 cut(s)	271
PagI	TCATGA	1 cut(s)	1083
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	3 cut(s)	269, 308, 846
PdiI	GCCGGC	1 cut(s)	551
PfeI	GAWTC	3 cut(s)	128, 1020, 1080
PfoI	TCCNGGA	1 cut(s)	922
PkrI	GCNGC	1 cut(s)	845
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
Psp6I	CCWGG	2 cut(s)	768, 922
PspGI	CCWGG	2 cut(s)	768, 922
PspN4I	GGNNCC	4 cut(s)	37, 492, 767, 774
PsuI	RGATCY	2 cut(s)	292, 1027
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SaqAI	TTAA	3 cut(s)	216, 422, 899
SatI	GCNGC	1 cut(s)	844
Sau3AI	GATC	6 cut(s)	262, 292, 360, 744, 958, 1027
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	2 cut(s)	770, 924
SduI	GDGCHC	1 cut(s)	914
SfaNI	GCATC	2 cut(s)	867, 1081
SfcI	CTRYAG	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
Sse9I	AATT	7 cut(s)	194, 385, 408, 686, 718, 951, 1100
SsiI	CCGC	4 cut(s)	10, 349, 841, 1034
SspMI	CTAG	2 cut(s)	1058, 1127
StyD4I	CCNGG	2 cut(s)	768, 922
TaaI	ACNGT	1 cut(s)	429
TaiI	ACGT	1 cut(s)	975
TaqI	TCGA	3 cut(s)	187, 363, 1023
TasI	AATT	7 cut(s)	194, 385, 408, 686, 718, 951, 1100
TatI	WGTACW	1 cut(s)	381
TfiI	GAWTC	3 cut(s)	128, 1020, 1080
Tru1I	TTAA	3 cut(s)	216, 422, 899
Tru9I	TTAA	3 cut(s)	216, 422, 899
TscAI	CASTG	2 cut(s)	432, 763
TseI	GCWGC	1 cut(s)	843
TspDTI	ATGAA	5 cut(s)	17, 391, 551, 617, 1100
TspGWI	ACGGA	1 cut(s)	601
TspRI	CASTG	2 cut(s)	432, 763
XapI	RAATTY	3 cut(s)	408, 951, 1100
XbaI	TCTAGA	1 cut(s)	1126
XspI	CTAG	2 cut(s)	1058, 1127
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.