Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011084

Physical Location & Seq

Genomic Coordinates Reverse (-)

71165165 .. 71166042

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0589700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGAGGAAATATCCAAGCTGAGAAAGCAGCTCCTCAAACTTGTCTTTAATCCAAATGGTGTTTCTGGAGGTGTGAAGGAATTTTCGTGGATCTATGGTAGTCAGAAAGATGTTGAAACTGTTTGGAGGGATGATGAGAAGCTTCTCTCAGTCAATGAGGAAGAGCTCTTACGCCAAGCTATCTGTGCTGGTTGGATAGATAGGGTTGCCAAACGCATTGAAGATTTGAAGGAAGTGCATATCAGGCCTGCATGTGAGTTGATCCAGACAAAGAAACCTTTCATGTACGGCATTACTTGTGTCAGTCCAGATTGGCTCGTCAAGTATGGTCTGCTTGCCATGTATGATCGGTGCTTGTGCACATTTTCAAAAGAAACTCCGCCTTACTATGACCGTCAAACTGACAAACTATTATACAGTGTCACTCCAACCTTTGGTCGTGTTCAACGGTGGGAGCTTCCACAACATTCTTTGCCAATTAGTAATTTTGATCATACAGGCGCAGTTCAAGCTTTTGCCTTTGCTTTGCTCGATGGCAAGGTTTTGCATTGCCTAAGACCTGTGCGTGAGTCCATGGCAGAACGTCCTCACACTGTTTTAAGGCCAGAGGCAGCAGGTCGAGAACGGGTTCATAATCTCTTGGCGAAGCTGGGGAAGAAAAAGATAGTCAGCCGTGCTATGTTGATAGAGGTGTGGAAGGAAAATCCCACTGAATTGTATCCGGAAATCCGGAGCTGGTTTAAGGAGAGTTTCCACCAGAAGTTTAGGGAAATTTGGGTCAAGATGCTTTATGAAGCCCTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0009653 GO:0009825 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015629 GO:0016043 GO:0016049 GO:0030029 GO:0030036 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0097435

KEGG Pathways

Metabolic & Signaling

ko04138 ko04530 map04138 map04530

Pfam Domains

Protein Families

Actin

Protein Analysis

268

Amino Acids

31.35

Weight (kDa)

8.91

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHX37_C	PF23362	185 - 262	1.3e-17	DEAH helicase DHX37 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27000
fragaria_vesca	FvH4_6g53870
malus_domestica	MD09G1007700.v1.1 MD17G1011600.v1.1
prunus_persica	Prupe.3G309300_v2.0.a1 Prupe.3G309300_v2.0.a1
pyrus_communis	pycom111g00600 pycom17g00630
rosa_chinensis	RchiOBHm_Chr2g0176031
rosa_laevigata	RLG00000022374
rosa_multiflora	Rmu_sc0011610.1_g000002 Rmu_sc0012513.1_g000004 Rmu_sc0012513.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076840
rosa_rugosa	Rorug02G0589600 Rorug02G0589700
rosa_samantha	Rh2AG668600 Rh2CG643100 Rh2DG693900
rosa_wichuraiana	Rw2G054830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	605
AccB7I	CCANNNNNTGG	1 cut(s)	434
AccIII	TCCGGA	2 cut(s)	721, 729
AciI	CCGC	1 cut(s)	380
AclWI	GGATC	2 cut(s)	98, 256
AcsI	RAATTY	2 cut(s)	80, 771
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	434
AgsI	TTSAA	6 cut(s)	116, 221, 229, 369, 446, 509
AjuI	GAANNNNNNNTTGG	2 cut(s)	46, 78
AluBI	AGCT	9 cut(s)	19, 31, 142, 166, 179, 457, 512, 649, 735
AluI	AGCT	9 cut(s)	19, 31, 142, 166, 179, 457, 512, 649, 735
Alw21I	GWGCWC	2 cut(s)	168, 362
Alw44I	GTGCAC	1 cut(s)	358
AlwI	GGATC	2 cut(s)	98, 256
Aor13HI	TCCGGA	2 cut(s)	721, 729
AoxI	GGCC	2 cut(s)	245, 602
ApaLI	GTGCAC	1 cut(s)	358
ApeKI	GCWGC	2 cut(s)	28, 611
ApoI	RAATTY	2 cut(s)	80, 771
Asp700I	GAANNNNTTC	2 cut(s)	278, 627
AspLEI	GCGC	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	168
BarI	GAAGNNNNNNTAC	2 cut(s)	153, 185
Bbv12I	GWGCWC	2 cut(s)	168, 362
BbvI	GCAGC	2 cut(s)	40, 623
BccI	CCATC	1 cut(s)	527
BceAI	ACGGC	2 cut(s)	304, 657
BciVI	GTATCC	1 cut(s)	729
BclI	TGATCA	1 cut(s)	490
BfuAI	ACCTGC	1 cut(s)	605
BfuI	GTATCC	1 cut(s)	729
BisI	GCNGC	2 cut(s)	29, 612
BlsI	GCNGC	2 cut(s)	30, 613
BmsI	GCATC	1 cut(s)	774
BpmI	CTGGAG	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	573
BsaWI	WCCGGW	2 cut(s)	721, 729
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse3DI	GCAATG	1 cut(s)	547
BseAI	TCCGGA	2 cut(s)	721, 729
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMI	GCAATG	1 cut(s)	547
BseMII	CTCAG	2 cut(s)	11, 162
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	2 cut(s)	40, 623
BseYI	CCCAGC	1 cut(s)	649
BshFI	GGCC	2 cut(s)	247, 604
BsiHKAI	GWGCWC	2 cut(s)	168, 362
BsiSI	CCGG	2 cut(s)	722, 730
BslI	CCNNNNNNNGG	1 cut(s)	434
BsnI	GGCC	2 cut(s)	247, 604
Bsp1286I	GDGCHC	2 cut(s)	168, 362
Bsp13I	TCCGGA	2 cut(s)	721, 729
Bsp143I	GATC	4 cut(s)	90, 261, 346, 490
Bsp19I	CCATGG	1 cut(s)	573
BspACI	CCGC	1 cut(s)	380
BspANI	GGCC	2 cut(s)	247, 604
BspCNI	CTCAG	2 cut(s)	12, 161
BspEI	TCCGGA	2 cut(s)	721, 729
BspMI	ACCTGC	1 cut(s)	605
BspPI	GGATC	2 cut(s)	98, 256
BspQI	GCTCTTC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	547
BssECI	CCNNGG	1 cut(s)	573
BssMI	GATC	4 cut(s)	90, 261, 346, 490
BssT1I	CCWWGG	1 cut(s)	573
Bst4CI	ACNGT	5 cut(s)	121, 395, 419, 450, 595
Bst6I	CTCTTC	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	249, 336
BstDEI	CTNAG	3 cut(s)	20, 148, 554
BstDSI	CCRYGG	1 cut(s)	573
BstF5I	GGATG	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	4 cut(s)	93, 264, 349, 493
BstMBI	GATC	4 cut(s)	90, 261, 346, 490
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 185, 244, 509
BstNSI	RCATGY	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	362
BstV1I	GCAGC	2 cut(s)	40, 623
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	729
BsuRI	GGCC	2 cut(s)	247, 604
BtgI	CCRYGG	1 cut(s)	573
BtsCI	GGATG	1 cut(s)	136
BtsIMutI	CAGTG	3 cut(s)	424, 591, 708
BveI	ACCTGC	1 cut(s)	605
Cac8I	GCNNGC	2 cut(s)	249, 336
CfoI	GCGC	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	4 cut(s)	252, 283, 340, 574
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	3 cut(s)	20, 148, 554
DpnI	GATC	4 cut(s)	92, 263, 348, 492
DpnII	GATC	4 cut(s)	90, 261, 346, 490
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
EciI	GGCGGA	1 cut(s)	369
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	573
Eco147I	AGGCCT	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	4 cut(s)	255, 286, 343, 577
FatI	CATG	4 cut(s)	251, 282, 339, 573
FbaI	TGATCA	1 cut(s)	490
Fnu4HI	GCNGC	2 cut(s)	29, 612
FokI	GGATG	1 cut(s)	143
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	29, 612
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	2 cut(s)	29, 612
GsaI	CCCAGC	1 cut(s)	653
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	247, 604
HapII	CCGG	2 cut(s)	722, 730
HhaI	GCGC	1 cut(s)	503
Hin1II	CATG	4 cut(s)	255, 286, 343, 577
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HindIII	AAGCTT	2 cut(s)	140, 510
HinfI	GANTC	1 cut(s)	569
HpaII	CCGG	2 cut(s)	722, 730
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	7 cut(s)	66, 265, 308, 620, 722, 730, 781
Hpy8I	GTNNAC	1 cut(s)	360
HpyAV	CCTTC	3 cut(s)	70, 223, 691
HpyCH4III	ACNGT	5 cut(s)	121, 395, 419, 450, 595
HpyCH4IV	ACGT	1 cut(s)	583
HpyCH4V	TGCA	4 cut(s)	238, 251, 360, 547
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 185, 244, 509
HpyF3I	CTNAG	3 cut(s)	20, 148, 554
HpySE526I	ACGT	1 cut(s)	583
Hsp92II	CATG	4 cut(s)	255, 286, 343, 577
HspAI	GCGC	1 cut(s)	501
Kpn2I	TCCGGA	2 cut(s)	721, 729
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	4 cut(s)	90, 261, 346, 490
LguI	GCTCTTC	1 cut(s)	156
LmnI	GCTCC	3 cut(s)	36, 454, 732
Lsp1109I	GCAGC	2 cut(s)	40, 623
LweI	GCATC	1 cut(s)	774
MaeII	ACGT	1 cut(s)	583
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	4 cut(s)	92, 263, 348, 492
MboI	GATC	4 cut(s)	90, 261, 346, 490
MboII	GAAGA	3 cut(s)	173, 233, 667
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	2 cut(s)	168, 362
MluCI	AATT	5 cut(s)	80, 477, 484, 713, 771
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	2 cut(s)	173, 452
MnlI	CCTC	7 cut(s)	44, 62, 120, 151, 597, 601, 682
MroI	TCCGGA	2 cut(s)	721, 729
MroXI	GAANNNNTTC	2 cut(s)	278, 627
MseI	TTAA	3 cut(s)	48, 599, 741
MspI	CCGG	2 cut(s)	722, 730
MwoI	GCNNNNNNNGC	4 cut(s)	25, 185, 244, 509
NcoI	CCATGG	1 cut(s)	573
NdeII	GATC	4 cut(s)	90, 261, 346, 490
NlaIII	CATG	4 cut(s)	255, 286, 343, 577
NmuCI	GTSAC	1 cut(s)	421
NspI	RCATGY	1 cut(s)	255
PceI	AGGCCT	1 cut(s)	247
PciSI	GCTCTTC	1 cut(s)	156
PdmI	GAANNNNTTC	2 cut(s)	278, 627
PflMI	CCANNNNNTGG	1 cut(s)	434
PkrI	GCNGC	2 cut(s)	30, 613
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
Psp124BI	GAGCTC	1 cut(s)	168
PspFI	CCCAGC	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	90
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SacI	GAGCTC	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	3 cut(s)	48, 599, 741
SatI	GCNGC	2 cut(s)	29, 612
Sau3AI	GATC	4 cut(s)	90, 261, 346, 490
SchI	GAGTC	1 cut(s)	578
SduI	GDGCHC	2 cut(s)	168, 362
SfaNI	GCATC	1 cut(s)	774
Sse9I	AATT	5 cut(s)	80, 477, 484, 713, 771
SseBI	AGGCCT	1 cut(s)	247
SsiI	CCGC	1 cut(s)	380
SstI	GAGCTC	1 cut(s)	168
StuI	AGGCCT	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	5 cut(s)	121, 395, 419, 450, 595
TaiI	ACGT	1 cut(s)	586
TaqI	TCGA	2 cut(s)	531, 619
TasI	AATT	5 cut(s)	80, 477, 484, 713, 771
Tru1I	TTAA	3 cut(s)	48, 599, 741
Tru9I	TTAA	3 cut(s)	48, 599, 741
TscAI	CASTG	3 cut(s)	424, 598, 715
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	2 cut(s)	28, 611
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	3 cut(s)	271, 620, 807
TspRI	CASTG	3 cut(s)	424, 598, 715
Van91I	CCANNNNNTGG	1 cut(s)	434
VneI	GTGCAC	1 cut(s)	358
XapI	RAATTY	2 cut(s)	80, 771
XceI	RCATGY	1 cut(s)	255
XmnI	GAANNNNTTC	2 cut(s)	278, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.