Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0011084

Physical Location & Seq

Genomic Coordinates Reverse (-)

411970 .. 415556

Gene Structure 3587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00600.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGAACAGTCGAAACGTCGTCGTGTGTGACAATGGCACCGGGTATGTGAAGTGTGGATTTGCTGGAGAGAATTTCCCCACCTCGGTATTCCCTTGCGTAGTTGGAAGGCCACTGCTTCGATATGAGGAATCCCTTATGGAACAAGAAATCAAGGATGTCATTGTTGGAGAAGCTTGCGCGGAATTTCGGCATCAACTGGATATAAATTACCCGGTTAGCAATGGCATTGTGCAAAACTGGGATGATATGGGTCATGTCTGGGACCATGCATTTTACAGTGAGCTAAAGATAGATCCTACTGAGTGTCAGATTTTACTCACAGACCCGCCTCTTAATCCTTCGAAGAACCGTGAAAAAATGGTTGAGACCATGTTTGAGAAATACAATTTTGCTGGTGTCTTCATTCAAATTCAAGCTGTTCTAACGTTGTATGCTCAAGGCTTGCTTACCGGATTAGTCATCGACTCTGGTGATGGTGTTACACATGTGGTTCCAGTTGTTGATGGCTACTCATTTCCTCATCTTACAAAGCGAATGAATGTAGCTGGCCGACACATAACTTCGTATCTTGTTGATTTACTCTCACGAAGGGGGTATTCAATGAATAGAACAGCTGATTTTGAGACTGTTAGGGAAATCAAGGAGAAGCTCTGCTATATTAGTTATGATTACAAAAGGGAGTATCAGTTGGGACTTGAGACCACCATACTTGTAAAAAATTACACTCTGCCAGATGGAAGGGTGATTAAAGTTGGCACTGAAAGGTTCCAGGCTCCTGAGGCTCTTTTCACTCCTGAACTTATAGATGTTGAAGGTGATGGGATGGCGGACATGGTATTCCGCTGCATTCAGGAAATGGATATTGACAACAGGATGATGCTCTACCAGCATATTGTTTTAAGTGGAGGGAGCACGATGTATCCTGGATTACCTAGTCGTTTGGAGAAAGAAATACTGGACCGCTATCTTGACATTGTTTTGAAGGGTAACAAAGATGGACTGAAGAAATTGCGATTGCGAATTGAAGATCCTCCACGAAGAAAGCACATGGTGTATCTAGGTGGTGCAGTCCTTGCAGGAATTATGAAGGACGCTCCTGAATTTTGGATCACGAGGGAGGATTATCTAGAAGGAGTTGCTTGTCTAAGCAAGTGTGGTCAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0009653 GO:0009825 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015629 GO:0016043 GO:0016049 GO:0030029 GO:0030036 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0097435

KEGG Pathways

Metabolic & Signaling

ko04138 ko04530 map04138 map04530

Pfam Domains

Protein Families

Actin

Protein Analysis

389

Amino Acids

44.06

Weight (kDa)

5.34

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27000
fragaria_vesca	FvH4_6g53870
malus_domestica	MD09G1007700.v1.1 MD17G1011600.v1.1
prunus_persica	Prupe.3G309300_v2.0.a1 Prupe.3G309300_v2.0.a1
pyrus_communis	pycom111g00600 pycom17g00630
rosa_chinensis	RchiOBHm_Chr2g0176031
rosa_laevigata	RLG00000022374
rosa_multiflora	Rmu_sc0011610.1_g000002 Rmu_sc0012513.1_g000004 Rmu_sc0012513.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076840
rosa_rugosa	Rorug02G0589600 Rorug02G0589700
rosa_samantha	Rh2AG668600 Rh2CG643100 Rh2DG693900
rosa_wichuraiana	Rw2G054830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	35
AccII	CGCG	1 cut(s)	179
AciI	CCGC	5 cut(s)	179, 326, 827, 841, 961
AclI	AACGTT	1 cut(s)	425
AclWI	GGATC	3 cut(s)	287, 1022, 1115
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	4 cut(s)	70, 182, 408, 1100
AcuI	CTGAAG	1 cut(s)	1022
AdeI	CACNNNGTG	1 cut(s)	1051
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflIII	ACRYGT	1 cut(s)	484
AgsI	TTSAA	6 cut(s)	407, 413, 600, 812, 982, 1025
AjnI	CCWGG	2 cut(s)	768, 922
AluBI	AGCT	6 cut(s)	173, 283, 416, 545, 614, 649
AluI	AGCT	6 cut(s)	173, 283, 416, 545, 614, 649
Alw21I	GWGCWC	1 cut(s)	914
Alw26I	GTCTC	3 cut(s)	359, 617, 692
AlwI	GGATC	3 cut(s)	287, 1022, 1115
AoxI	GGCC	2 cut(s)	107, 547
ApeKI	GCWGC	1 cut(s)	843
ApoI	RAATTY	4 cut(s)	70, 182, 408, 1100
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	262, 958
AsuC2I	CCSGG	2 cut(s)	40, 212
AsuHPI	GGTGA	3 cut(s)	482, 754, 827
AsuII	TTCGAA	1 cut(s)	341
AvaII	GGWCC	2 cut(s)	262, 958
AxyI	CCTNAGG	1 cut(s)	777
BanI	GGYRCC	1 cut(s)	35
BauI	CACGAG	1 cut(s)	1111
BbsI	GAAGAC	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	914
BbvI	GCAGC	1 cut(s)	830
BccI	CCATC	6 cut(s)	467, 497, 728, 812, 817, 989
BciT130I	CCWGG	2 cut(s)	770, 924
BciVI	GTATCC	1 cut(s)	930
BcnI	CCSGG	2 cut(s)	40, 212
BcoDI	GTCTC	3 cut(s)	359, 617, 692
BfaI	CTAG	3 cut(s)	933, 1058, 1127
BfuI	GTATCC	1 cut(s)	930
BisI	GCNGC	1 cut(s)	844
BlsI	GCNGC	1 cut(s)	845
Bme1390I	CCNGG	4 cut(s)	40, 212, 770, 924
Bme18I	GGWCC	2 cut(s)	262, 958
BmgT120I	GGNCC	2 cut(s)	262, 958
BmiI	GGNNCC	5 cut(s)	37, 263, 492, 767, 774
BmrFI	CCNGG	4 cut(s)	40, 212, 770, 924
BmrI	ACTGGG	1 cut(s)	247
BmsI	GCATC	2 cut(s)	199, 867
BmuI	ACTGGG	1 cut(s)	247
BpiI	GAAGAC	1 cut(s)	391
BpmI	CTGGAG	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	341
BpuEI	CTTGAG	2 cut(s)	420, 716
BpuMI	CCSGG	2 cut(s)	40, 212
BsaI	GGTCTC	2 cut(s)	359, 692
BsaJI	CCNNGG	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	449
BsaXI	ACNNNNNCTCC	2 cut(s)	671, 701
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	4 cut(s)	201, 242, 494, 960
Bse21I	CCTNAGG	1 cut(s)	777
Bse3DI	GCAATG	1 cut(s)	226
BseBI	CCWGG	2 cut(s)	770, 924
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	4 cut(s)	160, 247, 828, 879
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	2 cut(s)	291, 768
BseNI	ACTGG	4 cut(s)	201, 242, 494, 960
BseXI	GCAGC	1 cut(s)	830
BsgI	GTGCAG	1 cut(s)	1086
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	109, 549
BshNI	GGYRCC	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	914
BsiSI	CCGG	3 cut(s)	39, 212, 450
BslFI	GGGAC	2 cut(s)	275, 705
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	3 cut(s)	359, 617, 692
BsmFI	GGGAC	2 cut(s)	275, 705
BsmI	GAATGC	1 cut(s)	846
BsnI	GGCC	2 cut(s)	109, 549
Bso31I	GGTCTC	2 cut(s)	359, 692
Bsp119I	TTCGAA	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	914
Bsp143I	GATC	3 cut(s)	292, 1027, 1107
BspACI	CCGC	5 cut(s)	179, 326, 827, 841, 961
BspANI	GGCC	2 cut(s)	109, 549
BspCNI	CTCAG	2 cut(s)	292, 769
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	5 cut(s)	37, 263, 492, 767, 774
BspPI	GGATC	3 cut(s)	287, 1022, 1115
BspT104I	TTCGAA	1 cut(s)	341
BspT107I	GGYRCC	1 cut(s)	35
BspTNI	GGTCTC	2 cut(s)	359, 692
BsrDI	GCAATG	1 cut(s)	226
BsrI	ACTGG	4 cut(s)	201, 242, 494, 960
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	3 cut(s)	292, 1027, 1107
BssSI	CACGAG	1 cut(s)	1111
Bst2BI	CACGAG	1 cut(s)	1111
Bst2UI	CCWGG	2 cut(s)	770, 924
Bst4CI	ACNGT	4 cut(s)	8, 278, 350, 628
BstAPI	GCANNNNNTGC	1 cut(s)	1073
BstBI	TTCGAA	1 cut(s)	341
BstC8I	GCNNGC	3 cut(s)	175, 443, 547
BstDEI	CTNAG	3 cut(s)	300, 777, 1145
BstF5I	GGATG	4 cut(s)	160, 247, 828, 879
BstFNI	CGCG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	3 cut(s)	295, 1030, 1110
BstMAI	GTCTC	3 cut(s)	359, 617, 692
BstMBI	GATC	3 cut(s)	292, 1027, 1107
BstMWI	GCNNNNNNNGC	3 cut(s)	779, 886, 1073
BstNI	CCWGG	2 cut(s)	770, 924
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	4 cut(s)	38, 210, 768, 922
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	830
BstV2I	GAAGAC	1 cut(s)	391
BstX2I	RGATCY	2 cut(s)	292, 1027
BstYI	RGATCY	2 cut(s)	292, 1027
Bsu36I	CCTNAGG	1 cut(s)	777
BsuI	GTATCC	1 cut(s)	930
BsuRI	GGCC	2 cut(s)	109, 549
BtsCI	GGATG	4 cut(s)	160, 247, 828, 879
BtsI	GCAGTG	1 cut(s)	110
BtsIMutI	CAGTG	3 cut(s)	110, 283, 756
Cac8I	GCNNGC	3 cut(s)	175, 443, 547
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	262, 958
CseI	GACGC	1 cut(s)	1100
CspCI	CAANNNNNGTGG	2 cut(s)	691, 726
CviAII	CATG	7 cut(s)	254, 266, 370, 485, 832, 1048, 1164
DdeI	CTNAG	3 cut(s)	300, 777, 1145
DpnI	GATC	3 cut(s)	294, 1029, 1109
DpnII	GATC	3 cut(s)	292, 1027, 1107
DraIII	CACNNNGTG	1 cut(s)	1051
EaeI	YGGCCR	1 cut(s)	547
EciI	GGCGGA	1 cut(s)	842
Eco31I	GGTCTC	2 cut(s)	359, 692
Eco47I	GGWCC	2 cut(s)	262, 958
Eco57I	CTGAAG	1 cut(s)	1022
Eco81I	CCTNAGG	1 cut(s)	777
EcoRII	CCWGG	2 cut(s)	768, 922
EcoT22I	ATGCAT	1 cut(s)	271
FaeI	CATG	7 cut(s)	257, 269, 373, 488, 835, 1051, 1167
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	2 cut(s)	275, 705
FatI	CATG	7 cut(s)	253, 265, 369, 484, 831, 1047, 1163
FauI	CCCGC	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	844
FokI	GGATG	4 cut(s)	167, 254, 835, 886
Fsp4HI	GCNGC	1 cut(s)	844
FspBI	CTAG	3 cut(s)	933, 1058, 1127
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	1 cut(s)	844
GsuI	CTGGAG	1 cut(s)	84
HaeIII	GGCC	2 cut(s)	109, 549
HapII	CCGG	3 cut(s)	39, 212, 450
HgaI	GACGC	1 cut(s)	1100
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	7 cut(s)	257, 269, 373, 488, 835, 1051, 1167
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	2 cut(s)	128, 464
HpaII	CCGG	3 cut(s)	39, 212, 450
HphI	GGTGA	3 cut(s)	482, 754, 827
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	8 cut(s)	585, 776, 794, 851, 968, 1097, 1111, 1127
Hpy99I	CGWCG	2 cut(s)	20, 23
HpyAV	CCTTC	8 cut(s)	99, 348, 582, 732, 806, 976, 1081, 1124
HpyCH4III	ACNGT	4 cut(s)	8, 278, 350, 628
HpyCH4IV	ACGT	2 cut(s)	15, 425
HpyCH4V	TGCA	5 cut(s)	232, 269, 846, 1067, 1076
HpyF10VI	GCNNNNNNNGC	3 cut(s)	779, 886, 1073
HpyF3I	CTNAG	3 cut(s)	300, 777, 1145
HpySE526I	ACGT	2 cut(s)	15, 425
Hsp92II	CATG	7 cut(s)	257, 269, 373, 488, 835, 1051, 1167
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	292, 1027, 1107
LmnI	GCTCC	3 cut(s)	778, 909, 1099
Lsp1109I	GCAGC	1 cut(s)	830
LweI	GCATC	2 cut(s)	199, 867
MaeI	CTAG	3 cut(s)	933, 1058, 1127
MaeII	ACGT	2 cut(s)	15, 425
MaeIII	GTNAC	3 cut(s)	26, 478, 986
MalI	GATC	3 cut(s)	294, 1029, 1109
MboI	GATC	3 cut(s)	292, 1027, 1107
MboII	GAAGA	5 cut(s)	355, 391, 1015, 1037, 1050
MflI	RGATCY	2 cut(s)	292, 1027
MhlI	GDGCHC	1 cut(s)	914
MlyI	GAGTC	1 cut(s)	458
MmeI	TCCRAC	2 cut(s)	82, 145
MnlI	CCTC	9 cut(s)	91, 118, 339, 528, 772, 899, 1041, 1107, 1111
Mph1103I	ATGCAT	1 cut(s)	271
MseI	TTAA	3 cut(s)	333, 747, 899
MspA1I	CMGCKG	2 cut(s)	614, 843
MspI	CCGG	3 cut(s)	39, 212, 450
MspR9I	CCNGG	4 cut(s)	40, 212, 770, 924
Mva1269I	GAATGC	1 cut(s)	846
MvaI	CCWGG	2 cut(s)	770, 924
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	3 cut(s)	779, 886, 1073
NciI	CCSGG	2 cut(s)	40, 212
NdeII	GATC	3 cut(s)	292, 1027, 1107
NlaIII	CATG	7 cut(s)	257, 269, 373, 488, 835, 1051, 1167
NlaIV	GGNNCC	5 cut(s)	37, 263, 492, 767, 774
NmuCI	GTSAC	1 cut(s)	26
NsiI	ATGCAT	1 cut(s)	271
NspI	RCATGY	1 cut(s)	488
NspV	TTCGAA	1 cut(s)	341
PciI	ACATGT	1 cut(s)	484
PctI	GAATGC	1 cut(s)	846
PfeI	GAWTC	1 cut(s)	128
PfoI	TCCNGGA	1 cut(s)	922
PkrI	GCNGC	1 cut(s)	845
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
PscI	ACATGT	1 cut(s)	484
Psp1406I	AACGTT	1 cut(s)	425
Psp6I	CCWGG	2 cut(s)	768, 922
PspGI	CCWGG	2 cut(s)	768, 922
PspN4I	GGNNCC	5 cut(s)	37, 263, 492, 767, 774
PspPI	GGNCC	2 cut(s)	262, 958
PsuI	RGATCY	2 cut(s)	292, 1027
PvuII	CAGCTG	1 cut(s)	614
SaqAI	TTAA	3 cut(s)	333, 747, 899
SatI	GCNGC	1 cut(s)	844
Sau3AI	GATC	3 cut(s)	292, 1027, 1107
Sau96I	GGNCC	2 cut(s)	262, 958
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	4 cut(s)	40, 212, 770, 924
SduI	GDGCHC	1 cut(s)	914
SfaNI	GCATC	2 cut(s)	199, 867
SfuI	TTCGAA	1 cut(s)	341
SinI	GGWCC	2 cut(s)	262, 958
SmlI	CTYRAG	2 cut(s)	435, 695
SmoI	CTYRAG	2 cut(s)	435, 695
SsiI	CCGC	5 cut(s)	179, 326, 827, 841, 961
SspMI	CTAG	3 cut(s)	933, 1058, 1127
StyD4I	CCNGG	4 cut(s)	38, 210, 768, 922
TaaI	ACNGT	4 cut(s)	8, 278, 350, 628
TaiI	ACGT	2 cut(s)	18, 428
TaqI	TCGA	4 cut(s)	10, 118, 341, 462
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	3 cut(s)	333, 747, 899
Tru9I	TTAA	3 cut(s)	333, 747, 899
TscAI	CASTG	3 cut(s)	117, 283, 763
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	1 cut(s)	843
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	5 cut(s)	17, 391, 551, 617, 1100
TspRI	CASTG	3 cut(s)	117, 283, 763
VpaK11BI	GGWCC	2 cut(s)	262, 958
XapI	RAATTY	4 cut(s)	70, 182, 408, 1100
XbaI	TCTAGA	1 cut(s)	1126
XceI	RCATGY	1 cut(s)	488
XspI	CTAG	3 cut(s)	933, 1058, 1127
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.