AT3G28200

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014084
Physical Location & Seq
Forward (+)
10517977 .. 10519516
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G28200.1

Sequence Viewer

Length: 951 bp
ATGGCTTCACTCAAATCTCTCTTCCTCCTCTTCCTCTTCTTCTTCACAGCTCAATCTCGCTTAACCACAAACTTCTACTCAAAAACATGCCCAAGATTCCTCGACATCATCCGTGACACAATCACAAACAAACAAATCACTAATCCCACCACCGCAGCCGCCGTTATCCGTCTCTTCTTCCACGACTGTTTCCCTAACGGCTGCGACGCCTCCGTCCTCATCTCCTCCACCGCCTTCAACACCGCAGAACGTGACTCTTCCATCAACCTCTCACTCCCCGGAGACGGTTTCGACGTCATTGTCCGAGCCAAAACAGCTCTCGAACTCGCTTGTCCCAACACAGTTTCTTGCTCAGACATCATCTCCGTCGCAACACGTGATCTTCTAATCACCGTCGGTGGTCCTTACTACGACGTTTTCCTCGGCCGTCGTGATTCAAGAACGTCGAAATCTTCTCTTTTAACCGATCTTCTTCCTCTTCCTTCCACACCAATCTCTAAAATCATTCAACAGTTTGAATCAAAAGGTTTCACTGTTCAAGAAATGGTTGCTCTTAGTGGAGCACATTCTATAGGGTTTTCACATTGTAAAGAGTTTGTGGGTCGGGTGGGTCGGAATAATACCGGGTATAACCCGAGATTCGCAGTGGCTTTGAAGAAAGCTTGTGCTAATTACCCTAAAGATCCGACTATCTCTGTGTTTAATGATATTATGACTCCTAATAAGTTTGATAATATGTATTATCAGAATCTTAAAAAGGGTCTTGGGTTACTTGAATCGGATCATGGATTATATTCTGACCCTAGAACCAGATATTTTGTTGATCTTTATGCTAAGAATCAAGATCTGTTTTTCAAAGATTTTGCTAAAGCTATGCAGAAGTTGAGTCTTTTTGGTATACAGACTGGTAGAAGAGGAGAGATCCGAAGAAGGTGCGATGCTATTAATTGA

Protein Analysis

316

Amino Acids

35.3

Weight (kDa)

9.22

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 38 - 280 8.1e-72 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28200 AT5G40150
fragaria_vesca FvH4_6g50150 FvH4_6g50150
malus_domestica MD09G1039100.v1.1 MD17G1040100.v1.1
prunus_persica Prupe.3G278900_v2.0.a1
pyrus_communis pycom111g03080
rosa_chinensis RchiOBHm_Chr2g0170391
rosa_laevigata RLG00000021953
rosa_multiflora Rmu_sc0011601.1_g000014
rosa_rugosa Rorug02G0548700
rosa_samantha Rh2AG620200 Rh2BG631100 Rh2CG601000 Rh2DG644100
rosa_wichuraiana Rw2G051400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 212, 299
AatII GACGTC 1 cut(s) 297
AccI GTMKAC 1 cut(s) 898
AciI CCGC 4 cut(s) 153, 159, 231, 243
AclWI GGATC 3 cut(s) 677, 789, 916
AcoI YGGCCR 1 cut(s) 424
AcvI CACGTG 1 cut(s) 377
AcyI GRCGYC 2 cut(s) 207, 294
AfiI CCNNNNNNNGG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 374
AgsI TTSAA 8 cut(s) 238, 438, 509, 518, 539, 655, 776, 856
AluBI AGCT 4 cut(s) 50, 317, 662, 872
AluI AGCT 4 cut(s) 50, 317, 662, 872
Alw21I GWGCWC 1 cut(s) 565
Alw26I GTCTC 2 cut(s) 176, 276
AlwI GGATC 3 cut(s) 677, 789, 916
Ama87I CYCGRG 1 cut(s) 634
AoxI GGCC 1 cut(s) 424
ApeKI GCWGC 2 cut(s) 155, 201
AseI ATTAAT 1 cut(s) 945
AspS9I GGNCC 1 cut(s) 401
AsuC2I CCSGG 2 cut(s) 279, 625
AsuHPI GGTGA 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 634
AvaII GGWCC 1 cut(s) 401
BbrPI CACGTG 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 565
BbvI GCAGC 2 cut(s) 167, 188
BccI CCATC 1 cut(s) 269
BceAI ACGGC 3 cut(s) 146, 214, 411
BcgI CGANNNNNNTGC 2 cut(s) 915, 949
BcnI CCSGG 2 cut(s) 279, 625
BcoDI GTCTC 2 cut(s) 176, 276
BfaI CTAG 1 cut(s) 804
BfmI CTRYAG 1 cut(s) 570
BglII AGATCT 1 cut(s) 844
BisI GCNGC 3 cut(s) 156, 159, 202
BlsI GCNGC 3 cut(s) 157, 160, 203
Bme1390I CCNGG 2 cut(s) 279, 625
Bme18I GGWCC 1 cut(s) 401
BmeT110I CYCGRG 1 cut(s) 634
BmgT120I GGNCC 1 cut(s) 401
BmrFI CCNGG 2 cut(s) 279, 625
BmsI GCATC 1 cut(s) 928
BpuMI CCSGG 2 cut(s) 279, 625
BsaAI YACGTR 1 cut(s) 377
BsaHI GRCGYC 2 cut(s) 207, 294
BsaJI CCNNGG 2 cut(s) 277, 421
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 910
BseDI CCNNGG 2 cut(s) 277, 421
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 910
BseRI GAGGAG 3 cut(s) 17, 214, 930
BseX3I CGGCCG 1 cut(s) 424
BseXI GCAGC 2 cut(s) 167, 188
Bsh1285I CGRYCG 1 cut(s) 427
BshFI GGCC 1 cut(s) 426
BsiEI CGRYCG 1 cut(s) 427
BsiHKAI GWGCWC 1 cut(s) 565
BsiHKCI CYCGRG 1 cut(s) 634
BsiSI CCGG 2 cut(s) 279, 624
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 2 cut(s) 176, 276
BsmBI CGTCTC 2 cut(s) 176, 276
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 1 cut(s) 426
BsoBI CYCGRG 1 cut(s) 634
Bsp1286I GDGCHC 1 cut(s) 565
Bsp143I GATC 7 cut(s) 379, 466, 682, 781, 823, 844, 921
BspACI CCGC 4 cut(s) 153, 159, 231, 243
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 1 cut(s) 365
BspPI GGATC 3 cut(s) 677, 789, 916
BsrI ACTGG 1 cut(s) 910
BssECI CCNNGG 2 cut(s) 277, 421
BssMI GATC 7 cut(s) 379, 466, 682, 781, 823, 844, 921
BssNAI GTATAC 1 cut(s) 899
BssNI GRCGYC 2 cut(s) 207, 294
Bst1107I GTATAC 1 cut(s) 899
Bst4CI ACNGT 6 cut(s) 188, 287, 343, 394, 513, 535
Bst6I CTCTTC 7 cut(s) 26, 35, 41, 179, 262, 483, 907
BstACI GRCGYC 2 cut(s) 207, 294
BstBAI YACGTR 1 cut(s) 377
BstDEI CTNAG 3 cut(s) 352, 554, 834
BstF5I GGATG 1 cut(s) 108
BstKTI GATC 7 cut(s) 382, 469, 685, 784, 826, 847, 924
BstMAI GTCTC 2 cut(s) 176, 276
BstMBI GATC 7 cut(s) 379, 466, 682, 781, 823, 844, 921
BstMCI CGRYCG 1 cut(s) 427
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNSI RCATGY 1 cut(s) 90
BstSCI CCNGG 2 cut(s) 277, 623
BstSFI CTRYAG 1 cut(s) 570
BstV1I GCAGC 2 cut(s) 167, 188
BstX2I RGATCY 3 cut(s) 682, 844, 921
BstYI RGATCY 3 cut(s) 682, 844, 921
BstZ17I GTATAC 1 cut(s) 899
BstZI CGGCCG 1 cut(s) 424
BsuRI GGCC 1 cut(s) 426
BtsCI GGATG 1 cut(s) 108
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 2 cut(s) 531, 651
Cfr13I GGNCC 1 cut(s) 401
CseI GACGC 1 cut(s) 215
CviAII CATG 2 cut(s) 87, 785
DdeI CTNAG 3 cut(s) 352, 554, 834
DpnI GATC 7 cut(s) 381, 468, 684, 783, 825, 846, 923
DpnII GATC 7 cut(s) 379, 466, 682, 781, 823, 844, 921
DrdI GACNNNNNNGTC 2 cut(s) 212, 299
DseDI GACNNNNNNGTC 2 cut(s) 212, 299
EaeI YGGCCR 1 cut(s) 424
EagI CGGCCG 1 cut(s) 424
Eam1104I CTCTTC 7 cut(s) 26, 35, 41, 179, 262, 483, 907
EarI CTCTTC 7 cut(s) 26, 35, 41, 179, 262, 483, 907
EclXI CGGCCG 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 401
Eco52I CGGCCG 1 cut(s) 424
Eco72I CACGTG 1 cut(s) 377
Eco88I CYCGRG 1 cut(s) 634
Esp3I CGTCTC 2 cut(s) 176, 276
FaeI CATG 2 cut(s) 90, 788
FaqI GGGAC 1 cut(s) 318
FatI CATG 2 cut(s) 86, 784
FblI GTMKAC 1 cut(s) 898
Fnu4HI GCNGC 3 cut(s) 156, 159, 202
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 3 cut(s) 156, 159, 202
FspBI CTAG 1 cut(s) 804
GluI GCNGC 3 cut(s) 156, 159, 202
HaeIII GGCC 1 cut(s) 426
HapII CCGG 2 cut(s) 279, 624
HgaI GACGC 1 cut(s) 215
Hin1I GRCGYC 2 cut(s) 207, 294
Hin1II CATG 2 cut(s) 90, 788
HindIII AAGCTT 1 cut(s) 660
HpaII CCGG 2 cut(s) 279, 624
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 1 cut(s) 899
Hpy188I TCNGA 8 cut(s) 305, 355, 615, 687, 747, 781, 799, 926
Hpy188III TCNNGA 5 cut(s) 320, 431, 438, 539, 842
Hpy8I GTNNAC 1 cut(s) 899
Hpy99I CGWCG 7 cut(s) 209, 296, 371, 398, 416, 432, 448
HpyAV CCTTC 3 cut(s) 244, 492, 924
HpyCH4III ACNGT 6 cut(s) 188, 287, 343, 394, 513, 535
HpyCH4IV ACGT 5 cut(s) 250, 294, 376, 414, 443
HpyCH4V TGCA 1 cut(s) 877
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 3 cut(s) 352, 554, 834
HpySE526I ACGT 5 cut(s) 250, 294, 376, 414, 443
Hsp92I GRCGYC 2 cut(s) 207, 294
Hsp92II CATG 2 cut(s) 90, 788
Kzo9I GATC 7 cut(s) 379, 466, 682, 781, 823, 844, 921
LmnI GCTCC 1 cut(s) 560
LpnPI CCDG 4 cut(s) 292, 637, 823, 891
Lsp1109I GCAGC 2 cut(s) 167, 188
LweI GCATC 1 cut(s) 928
MaeI CTAG 1 cut(s) 804
MaeII ACGT 5 cut(s) 250, 294, 376, 414, 443
MaeIII GTNAC 3 cut(s) 113, 251, 768
MalI GATC 7 cut(s) 381, 468, 684, 783, 825, 846, 923
MboI GATC 7 cut(s) 379, 466, 682, 781, 823, 844, 921
MflI RGATCY 3 cut(s) 682, 844, 921
MhlI GDGCHC 1 cut(s) 565
MluCI AATT 2 cut(s) 670, 946
MlyI GAGTC 3 cut(s) 248, 709, 895
MmeI TCCRAC 2 cut(s) 593, 710
MseI TTAA 5 cut(s) 62, 461, 702, 753, 945
MspI CCGG 2 cut(s) 279, 624
MspR9I CCNGG 2 cut(s) 279, 625
MwoI GCNNNNNNNGC 1 cut(s) 314
NciI CCSGG 2 cut(s) 279, 625
NdeII GATC 7 cut(s) 379, 466, 682, 781, 823, 844, 921
NlaIII CATG 2 cut(s) 90, 788
NmeAIII GCCGAG 1 cut(s) 402
NmuCI GTSAC 2 cut(s) 113, 251
NspI RCATGY 1 cut(s) 90
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PfeI GAWTC 7 cut(s) 96, 434, 518, 639, 748, 776, 838
PkrI GCNGC 3 cut(s) 157, 160, 203
PleI GAGTC 3 cut(s) 248, 709, 894
PmaCI CACGTG 1 cut(s) 377
PmlI CACGTG 1 cut(s) 377
PpsI GAGTC 3 cut(s) 248, 709, 894
Ppu21I YACGTR 1 cut(s) 377
PshBI ATTAAT 1 cut(s) 945
PspCI CACGTG 1 cut(s) 377
PspPI GGNCC 1 cut(s) 401
PsuI RGATCY 3 cut(s) 682, 844, 921
SaqAI TTAA 5 cut(s) 62, 461, 702, 753, 945
SatI GCNGC 3 cut(s) 156, 159, 202
Sau3AI GATC 7 cut(s) 379, 466, 682, 781, 823, 844, 921
Sau96I GGNCC 1 cut(s) 401
SchI GAGTC 3 cut(s) 248, 709, 895
ScrFI CCNGG 2 cut(s) 279, 625
SduI GDGCHC 1 cut(s) 565
SfaNI GCATC 1 cut(s) 928
SfcI CTRYAG 1 cut(s) 570
SinI GGWCC 1 cut(s) 401
Sse9I AATT 2 cut(s) 670, 946
SsiI CCGC 4 cut(s) 153, 159, 231, 243
SspMI CTAG 1 cut(s) 804
StyD4I CCNGG 2 cut(s) 277, 623
TaaI ACNGT 6 cut(s) 188, 287, 343, 394, 513, 535
TaiI ACGT 5 cut(s) 253, 297, 379, 417, 446
TaqI TCGA 4 cut(s) 102, 291, 321, 446
TasI AATT 2 cut(s) 670, 946
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 7 cut(s) 96, 434, 518, 639, 748, 776, 838
Tru1I TTAA 5 cut(s) 62, 461, 702, 753, 945
Tru9I TTAA 5 cut(s) 62, 461, 702, 753, 945
TscAI CASTG 2 cut(s) 538, 651
TseFI GTSAC 2 cut(s) 113, 251
TseI GCWGC 2 cut(s) 155, 201
Tsp45I GTSAC 2 cut(s) 113, 251
TspGWI ACGGA 4 cut(s) 101, 158, 202, 355
TspRI CASTG 2 cut(s) 538, 651
VpaK11BI GGWCC 1 cut(s) 401
VspI ATTAAT 1 cut(s) 945
XceI RCATGY 1 cut(s) 90
XmiI GTMKAC 1 cut(s) 898
XspI CTAG 1 cut(s) 804
ZraI GACGTC 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.