Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014084

Physical Location & Seq

Genomic Coordinates Reverse (-)

37374453 .. 37376312

Gene Structure 1860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50150.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCGGTGCTTCTCATTCTCTTCCTCGTACTCCTGTCAAGCTCTGCTTCTATAGAATCAAGGCTTTACACAAACTACTACTCTAAGTCTTGCCCGAGATTCACGCAGATTGTTCAGGACATTGTCACCAACAAACAGATCTCCACCCCCACCACCGCCGCCGCCACCCTCCGCCTCTTCTTCCACGACTGCCTCCACAACGGCTGCGACGCCTCCGTCCTAATCTCCTCCACCCATTTCAACAAAGCCGAGCGCGACGCCGACATCAACCTCTCCCTCCCCGGCGACGCCTTCGACGTCGTCGTCCGCGCCAAGACCGCCGTCGAGCTCGCCTGCCCCGGCACCGTCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACCTCGTCACCATGATGGGTGGCCCTTACTACAACGTCCCCCTCGGCCGCCGCGACGGGAAATCCTCACACGCCGCCGCCGTCGACGGAACCCTCCCCTTGCCCACCATGACCATCTCCCAGCTCATCGAGCTCTTCGGATCCAGAGGCTTCTCCGCTCAAGAAATGGTGGCCCTCACCGGGGCCCACACCATTGGATTCTCCCACTGTAAGGAGTTCACCGCCGCGATCTACAACTACAGCAGCGCGGCGCAGTCCGACCCGGAGTACAACCCGAGATACGCGGCCGGGTTGCGGAATGCATGCGCGGATTTCCAGAAGAACCCGACTTTGTCGGTGTTTAATGATATCATGACGCCGAACAAGTTCGACAATGCGTATTTCCAGAACCTTCCGAAGGGACTGGGGCTGCTGAAGTCGGATCATGCTCTGTTTAACGACCCGAGGACGAGGCCGTTTGTGGAGCTCTATGCGAAGGATCAGGGCAAGTTCTTCTATGCTTTTGCGAGAGCGATGGAGAAGCTGAGTGTGTATGGGATTCAGACTGGGAGGAAGGGAGAGATTAGGCGAAGATGCGATGAGTTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009505 GO:0030312 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

324

Amino Acids

35.5

Weight (kDa)

8.06

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	39 - 287	3.6e-80	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28200 AT5G40150
fragaria_vesca	FvH4_6g50150 FvH4_6g50150
malus_domestica	MD09G1039100.v1.1 MD17G1040100.v1.1
prunus_persica	Prupe.3G278900_v2.0.a1
pyrus_communis	pycom111g03080
rosa_chinensis	RchiOBHm_Chr2g0170391
rosa_laevigata	RLG00000021953
rosa_multiflora	Rmu_sc0011601.1_g000014
rosa_rugosa	Rorug02G0548700
rosa_samantha	Rh2AG620200 Rh2BG631100 Rh2CG601000 Rh2DG644100
rosa_wichuraiana	Rw2G051400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	215, 302
AatII	GACGTC	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	341
AccBSI	CCGCTC	1 cut(s)	539
AccI	GTMKAC	1 cut(s)	465
AccII	CGCG	8 cut(s)	255, 309, 381, 435, 608, 629, 665, 689
AclWI	GGATC	4 cut(s)	516, 529, 810, 867
AcoI	YGGCCR	2 cut(s)	427, 666
AcuI	CTGAAG	1 cut(s)	815
AcyI	GRCGYC	5 cut(s)	210, 258, 288, 297, 737
AfaI	GTAC	2 cut(s)	30, 650
AfiI	CCNNNNNNNGG	5 cut(s)	561, 562, 592, 675, 778
AgsI	TTSAA	1 cut(s)	241
AluBI	AGCT	6 cut(s)	42, 328, 505, 514, 847, 904
AluI	AGCT	6 cut(s)	42, 328, 505, 514, 847, 904
Alw21I	GWGCWC	3 cut(s)	330, 516, 849
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	4 cut(s)	516, 529, 810, 867
Ama87I	CYCGRG	3 cut(s)	94, 655, 823
AoxI	GGCC	6 cut(s)	403, 427, 552, 564, 666, 833
ApaI	GGGCCC	1 cut(s)	568
ApeKI	GCWGC	3 cut(s)	204, 624, 790
Asp700I	GAANNNNTTC	1 cut(s)	746
AspLEI	GCGC	6 cut(s)	255, 311, 356, 629, 634, 689
AspS9I	GGNCC	4 cut(s)	404, 553, 564, 565
AsuC2I	CCSGG	5 cut(s)	282, 339, 562, 644, 670
AsuHPI	GGTGA	4 cut(s)	118, 382, 550, 592
AvaI	CYCGRG	3 cut(s)	94, 655, 823
BaeGI	GKGCMC	1 cut(s)	568
BamHI	GGATCC	1 cut(s)	521
BanI	GGYRCC	1 cut(s)	341
BanII	GRGCYC	4 cut(s)	330, 516, 568, 849
Bbv12I	GWGCWC	3 cut(s)	330, 516, 849
BbvI	GCAGC	3 cut(s)	191, 636, 777
BccI	CCATC	3 cut(s)	391, 503, 889
BceAI	ACGGC	5 cut(s)	217, 305, 353, 446, 820
BcnI	CCSGG	5 cut(s)	282, 339, 562, 644, 670
BcoDI	GTCTC	1 cut(s)	352
BfmI	CTRYAG	2 cut(s)	51, 619
BglII	AGATCT	1 cut(s)	138
Bme1390I	CCNGG	5 cut(s)	282, 339, 562, 644, 670
BmeT110I	CYCGRG	3 cut(s)	94, 655, 823
BmgT120I	GGNCC	4 cut(s)	404, 553, 564, 565
BmiI	GGNNCC	5 cut(s)	343, 472, 523, 565, 566
BmrFI	CCNGG	5 cut(s)	282, 339, 562, 644, 670
BmrI	ACTGGG	2 cut(s)	794, 936
BmsI	GCATC	1 cut(s)	944
BmuI	ACTGGG	2 cut(s)	794, 936
BoxI	GACNNNNGTC	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	525
BpuMI	CCSGG	5 cut(s)	282, 339, 562, 644, 670
BsaHI	GRCGYC	5 cut(s)	210, 258, 288, 297, 737
BsaJI	CCNNGG	5 cut(s)	280, 337, 424, 561, 824
Bsc4I	CCNNNNNNNGG	5 cut(s)	561, 562, 592, 675, 778
Bse1I	ACTGG	2 cut(s)	789, 931
BseDI	CCNNGG	5 cut(s)	280, 337, 424, 561, 824
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	5 cut(s)	561, 562, 592, 675, 778
BseMII	CTCAG	1 cut(s)	896
BseNI	ACTGG	2 cut(s)	789, 931
BseRI	GAGGAG	1 cut(s)	217
BseSI	GKGCMC	1 cut(s)	568
BseX3I	CGGCCG	2 cut(s)	427, 666
BseXI	GCAGC	3 cut(s)	191, 636, 777
BseYI	CCCAGC	1 cut(s)	501
Bsh1236I	CGCG	8 cut(s)	255, 309, 381, 435, 608, 629, 665, 689
Bsh1285I	CGRYCG	2 cut(s)	430, 669
BshFI	GGCC	6 cut(s)	405, 429, 554, 566, 668, 835
BshNI	GGYRCC	1 cut(s)	341
BsiEI	CGRYCG	2 cut(s)	430, 669
BsiHKAI	GWGCWC	3 cut(s)	330, 516, 849
BsiHKCI	CYCGRG	3 cut(s)	94, 655, 823
BsiSI	CCGG	5 cut(s)	282, 339, 561, 644, 669
BslFI	GGGAC	2 cut(s)	404, 795
BslI	CCNNNNNNNGG	5 cut(s)	561, 562, 592, 675, 778
BsmAI	GTCTC	1 cut(s)	352
BsmBI	CGTCTC	1 cut(s)	352
BsmFI	GGGAC	2 cut(s)	404, 795
BsmI	GAATGC	1 cut(s)	685
BsnI	GGCC	6 cut(s)	405, 429, 554, 566, 668, 835
BsoBI	CYCGRG	3 cut(s)	94, 655, 823
Bsp120I	GGGCCC	1 cut(s)	564
Bsp1286I	GDGCHC	4 cut(s)	330, 516, 568, 849
Bsp143I	GATC	5 cut(s)	138, 521, 609, 802, 859
BspANI	GGCC	6 cut(s)	405, 429, 554, 566, 668, 835
BspCNI	CTCAG	1 cut(s)	897
BspFNI	CGCG	8 cut(s)	255, 309, 381, 435, 608, 629, 665, 689
BspHI	TCATGA	1 cut(s)	732
BspLI	GGNNCC	5 cut(s)	343, 472, 523, 565, 566
BspPI	GGATC	4 cut(s)	516, 529, 810, 867
BspQI	GCTCTTC	1 cut(s)	521
BspT107I	GGYRCC	1 cut(s)	341
BsrBI	CCGCTC	1 cut(s)	539
BsrI	ACTGG	2 cut(s)	789, 931
BssECI	CCNNGG	5 cut(s)	280, 337, 424, 561, 824
BssMI	GATC	5 cut(s)	138, 521, 609, 802, 859
BssNI	GRCGYC	5 cut(s)	210, 258, 288, 297, 737
Bst4CI	ACNGT	2 cut(s)	346, 590
Bst6I	CTCTTC	3 cut(s)	26, 182, 521
BstACI	GRCGYC	5 cut(s)	210, 258, 288, 297, 737
BstC8I	GCNNGC	4 cut(s)	330, 334, 379, 685
BstDEI	CTNAG	2 cut(s)	84, 905
BstENI	CCTNNNNNAGG	1 cut(s)	776
BstF5I	GGATG	1 cut(s)	360
BstFNI	CGCG	8 cut(s)	255, 309, 381, 435, 608, 629, 665, 689
BstHHI	GCGC	6 cut(s)	255, 311, 356, 629, 634, 689
BstKTI	GATC	5 cut(s)	141, 524, 612, 805, 862
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	5 cut(s)	138, 521, 609, 802, 859
BstMCI	CGRYCG	2 cut(s)	430, 669
BstMWI	GCNNNNNNNGC	3 cut(s)	317, 374, 511
BstNSI	RCATGY	1 cut(s)	687
BstPAI	GACNNNNGTC	1 cut(s)	320
BstSCI	CCNGG	5 cut(s)	280, 337, 560, 642, 668
BstSFI	CTRYAG	2 cut(s)	51, 619
BstSLI	GKGCMC	1 cut(s)	568
BstUI	CGCG	8 cut(s)	255, 309, 381, 435, 608, 629, 665, 689
BstV1I	GCAGC	3 cut(s)	191, 636, 777
BstX2I	RGATCY	2 cut(s)	138, 521
BstXI	CCANNNNNNTGG	1 cut(s)	575
BstYI	RGATCY	2 cut(s)	138, 521
BstZI	CGGCCG	2 cut(s)	427, 666
BsuRI	GGCC	6 cut(s)	405, 429, 554, 566, 668, 835
BtgZI	GCGATG	1 cut(s)	908
BtsCI	GGATG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	586
Cac8I	GCNNGC	4 cut(s)	330, 334, 379, 685
CciI	TCATGA	1 cut(s)	732
CfoI	GCGC	6 cut(s)	255, 311, 356, 629, 634, 689
Cfr13I	GGNCC	4 cut(s)	404, 553, 564, 565
CseI	GACGC	4 cut(s)	218, 266, 296, 745
Csp6I	GTAC	2 cut(s)	29, 649
CviAII	CATG	5 cut(s)	394, 490, 684, 733, 806
CviQI	GTAC	2 cut(s)	29, 649
DdeI	CTNAG	2 cut(s)	84, 905
DpnI	GATC	5 cut(s)	140, 523, 611, 804, 861
DpnII	GATC	5 cut(s)	138, 521, 609, 802, 859
DrdI	GACNNNNNNGTC	2 cut(s)	215, 302
DseDI	GACNNNNNNGTC	2 cut(s)	215, 302
EaeI	YGGCCR	2 cut(s)	427, 666
EagI	CGGCCG	2 cut(s)	427, 666
Eam1104I	CTCTTC	3 cut(s)	26, 182, 521
EarI	CTCTTC	3 cut(s)	26, 182, 521
EciI	GGCGGA	1 cut(s)	161
Ecl136II	GAGCTC	3 cut(s)	328, 514, 847
EclXI	CGGCCG	2 cut(s)	427, 666
Eco24I	GRGCYC	4 cut(s)	330, 516, 568, 849
Eco32I	GATATC	1 cut(s)	730
Eco52I	CGGCCG	2 cut(s)	427, 666
Eco53kI	GAGCTC	3 cut(s)	328, 514, 847
Eco57I	CTGAAG	1 cut(s)	815
Eco88I	CYCGRG	3 cut(s)	94, 655, 823
EcoICRI	GAGCTC	3 cut(s)	328, 514, 847
EcoNI	CCTNNNNNAGG	1 cut(s)	776
EcoO109I	RGGNCCY	1 cut(s)	564
EcoRV	GATATC	1 cut(s)	730
EcoT22I	ATGCAT	1 cut(s)	685
EcoT38I	GRGCYC	4 cut(s)	330, 516, 568, 849
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	5 cut(s)	397, 493, 687, 736, 809
FaiI	YATR	9 cut(s)	53, 395, 491, 685, 734, 807, 852, 879, 915
FalI	AAGNNNNNCTT	2 cut(s)	31, 63
FaqI	GGGAC	2 cut(s)	404, 795
FatI	CATG	5 cut(s)	393, 489, 683, 732, 805
FauI	CCCGC	1 cut(s)	386
FblI	GTMKAC	1 cut(s)	465
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	4 cut(s)	330, 516, 568, 849
GlaI	GCGC	6 cut(s)	254, 310, 355, 628, 633, 688
GsaI	CCCAGC	1 cut(s)	505
HaeIII	GGCC	6 cut(s)	405, 429, 554, 566, 668, 835
HapII	CCGG	5 cut(s)	282, 339, 561, 644, 669
HgaI	GACGC	4 cut(s)	218, 266, 296, 745
HhaI	GCGC	6 cut(s)	255, 311, 356, 629, 634, 689
Hin1I	GRCGYC	5 cut(s)	210, 258, 288, 297, 737
Hin1II	CATG	5 cut(s)	397, 493, 687, 736, 809
Hin6I	GCGC	6 cut(s)	253, 309, 354, 627, 632, 687
HinP1I	GCGC	6 cut(s)	253, 309, 354, 627, 632, 687
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	4 cut(s)	56, 99, 579, 919
HpaII	CCGG	5 cut(s)	282, 339, 561, 644, 669
HphI	GGTGA	4 cut(s)	118, 382, 550, 592
Hpy166II	GTNNAC	2 cut(s)	466, 600
Hpy188I	TCNGA	5 cut(s)	521, 640, 777, 802, 924
Hpy188III	TCNNGA	6 cut(s)	116, 525, 542, 697, 733, 766
Hpy8I	GTNNAC	2 cut(s)	466, 600
HpyAV	CCTTC	5 cut(s)	301, 772, 782, 850, 928
HpyCH4III	ACNGT	2 cut(s)	346, 590
HpyCH4IV	ACGT	2 cut(s)	297, 417
HpyCH4V	TGCA	1 cut(s)	683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	317, 374, 511
HpyF3I	CTNAG	2 cut(s)	84, 905
HpySE526I	ACGT	2 cut(s)	297, 417
Hsp92I	GRCGYC	5 cut(s)	210, 258, 288, 297, 737
Hsp92II	CATG	5 cut(s)	397, 493, 687, 736, 809
HspAI	GCGC	6 cut(s)	253, 309, 354, 627, 632, 687
Kzo9I	GATC	5 cut(s)	138, 521, 609, 802, 859
LguI	GCTCTTC	1 cut(s)	521
LmnI	GCTCC	1 cut(s)	844
Lsp1109I	GCAGC	3 cut(s)	191, 636, 777
LweI	GCATC	1 cut(s)	944
MaeII	ACGT	2 cut(s)	297, 417
MaeIII	GTNAC	2 cut(s)	124, 388
MalI	GATC	5 cut(s)	140, 523, 611, 804, 861
MbiI	CCGCTC	1 cut(s)	539
MboI	GATC	5 cut(s)	138, 521, 609, 802, 859
MboII	GAAGA	7 cut(s)	13, 169, 172, 508, 712, 865, 963
MflI	RGATCY	2 cut(s)	138, 521
MhlI	GDGCHC	4 cut(s)	330, 516, 568, 849
MluCI	AATT	1 cut(s)	967
MmeI	TCCRAC	2 cut(s)	663, 780
Mph1103I	ATGCAT	1 cut(s)	685
MroXI	GAANNNNTTC	1 cut(s)	746
MseI	TTAA	3 cut(s)	723, 816, 966
MslI	CAYNNNNRTG	1 cut(s)	395
MspI	CCGG	5 cut(s)	282, 339, 561, 644, 669
MspR9I	CCNGG	5 cut(s)	282, 339, 562, 644, 670
MteI	GCGCNGCGC	1 cut(s)	630
Mva1269I	GAATGC	1 cut(s)	685
MvnI	CGCG	8 cut(s)	255, 309, 381, 435, 608, 629, 665, 689
MwoI	GCNNNNNNNGC	3 cut(s)	317, 374, 511
NciI	CCSGG	5 cut(s)	282, 339, 562, 644, 670
NdeII	GATC	5 cut(s)	138, 521, 609, 802, 859
NlaIII	CATG	5 cut(s)	397, 493, 687, 736, 809
NlaIV	GGNNCC	5 cut(s)	343, 472, 523, 565, 566
NmeAIII	GCCGAG	2 cut(s)	274, 405
NmuCI	GTSAC	2 cut(s)	124, 388
NsiI	ATGCAT	1 cut(s)	685
NspI	RCATGY	1 cut(s)	687
PaeI	GCATGC	1 cut(s)	687
PagI	TCATGA	1 cut(s)	732
PciSI	GCTCTTC	1 cut(s)	521
PcsI	WCGNNNNNNNCGW	5 cut(s)	294, 300, 378, 432, 459
PctI	GAATGC	1 cut(s)	685
PdmI	GAANNNNTTC	1 cut(s)	746
PfeI	GAWTC	4 cut(s)	56, 99, 579, 919
PflFI	GACNNNGTC	4 cut(s)	122, 299, 386, 712
PshAI	GACNNNNGTC	1 cut(s)	320
Psp124BI	GAGCTC	3 cut(s)	330, 516, 849
PspFI	CCCAGC	1 cut(s)	501
PspN4I	GGNNCC	5 cut(s)	343, 472, 523, 565, 566
PspOMI	GGGCCC	1 cut(s)	564
PspPI	GGNCC	4 cut(s)	404, 553, 564, 565
PsuI	RGATCY	2 cut(s)	138, 521
PsyI	GACNNNGTC	4 cut(s)	122, 299, 386, 712
RsaI	GTAC	2 cut(s)	30, 650
RsaNI	GTAC	2 cut(s)	29, 649
RseI	CAYNNNNRTG	1 cut(s)	395
SacI	GAGCTC	3 cut(s)	330, 516, 849
SalI	GTCGAC	1 cut(s)	464
SapI	GCTCTTC	1 cut(s)	521
SaqAI	TTAA	3 cut(s)	723, 816, 966
Sau3AI	GATC	5 cut(s)	138, 521, 609, 802, 859
Sau96I	GGNCC	4 cut(s)	404, 553, 564, 565
ScrFI	CCNGG	5 cut(s)	282, 339, 562, 644, 670
SduI	GDGCHC	4 cut(s)	330, 516, 568, 849
SfaNI	GCATC	1 cut(s)	944
SfcI	CTRYAG	2 cut(s)	51, 619
SgrDI	CGTCGACG	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	540
SmoI	CTYRAG	1 cut(s)	540
SphI	GCATGC	1 cut(s)	687
Sse9I	AATT	1 cut(s)	967
SstI	GAGCTC	3 cut(s)	330, 516, 849
StyD4I	CCNGG	5 cut(s)	280, 337, 560, 642, 668
TaaI	ACNGT	2 cut(s)	346, 590
TaiI	ACGT	2 cut(s)	300, 420
TaqI	TCGA	5 cut(s)	294, 324, 465, 510, 750
TasI	AATT	1 cut(s)	967
TatI	WGTACW	1 cut(s)	648
TfiI	GAWTC	4 cut(s)	56, 99, 579, 919
Tru1I	TTAA	3 cut(s)	723, 816, 966
Tru9I	TTAA	3 cut(s)	723, 816, 966
TscAI	CASTG	1 cut(s)	593
TseFI	GTSAC	2 cut(s)	124, 388
TseI	GCWGC	3 cut(s)	204, 624, 790
Tsp45I	GTSAC	2 cut(s)	124, 388
TspGWI	ACGGA	2 cut(s)	205, 483
TspRI	CASTG	1 cut(s)	593
Tth111I	GACNNNGTC	4 cut(s)	122, 299, 386, 712
XagI	CCTNNNNNAGG	1 cut(s)	776
XceI	RCATGY	1 cut(s)	687
XmiI	GTMKAC	1 cut(s)	465
XmnI	GAANNNNTTC	1 cut(s)	746
ZraI	GACGTC	1 cut(s)	298
Zsp2I	ATGCAT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.