AT5G40150

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014084
Physical Location & Seq
Reverse (-)
16059504 .. 16061043
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40150.1

Sequence Viewer

Length: 987 bp
ATGGCGGAACAATCTCAACTCAAGAATCTCACCATCATCCTCCTCCTCCTCTGCTTATCCTTCCAATCACTATCCTTCGCCGCCGAATCTCACCTAACCGTCGATTTCTACTCCAAATCATGCCCTAAATTCCTCGACATTATCCGCGAAACCATCACCAACAAACAGATCTCAACTCCAACAACCGCCGCCGCAGCTCTCCGCCTCTTCTTCCACGACTGTTTCCCCAACGGCTGCGACGCCTCCGTCCTCGTTTCTTCCACCGCTTTCAACACCGCCGAACGCGATTCATCAATCAATCTCTCTCTCCCCGGAGACGGATTCGACGTAGTAATCCGAGCTAAAACAGCTCTCGAACTCGCTTGTCCCAACACAGTCTCTTGCTCCGATATCATCGCCGTCGCGGTACGTGATCTCCTCGTAACCGTCGGTGGACCTTACTACGAAATCTCCCTCGGCCGTCGCGATTCACGAACTTCGAAATCATCTCTCGTCTCCGATCTCCTCCCGCTCCCGTCGATGCAGATATCGAAGCTCATCGATCAATTCAGCTCCAGAGGCTTCTCCGTTCAAGAAATGGTTGCTTTGAGTGGTGCTCACACCATCGGATTCTCACATTGCAAGGAGTTCACGAACCGGGTCAACCCGAATAATAGTACCGGGTATAACCCGAGATTCGCGGTAGCTTTAAAGAAAGCTTGTTCGAATTCCAAAAATGACCCTACGATATCTGTCTTCAACGACGTTATGACTCCGAACAAATTCGATAATATGTATTTCCAGAATATTCCGAAAGGTCTCGGGTTACTTGAATCGGATCACGGTTTATTCTCCGACCCGAGAACCCGTCCGTTCGTTGAGTTATACGCGAGAGACCAATCTCGGTTCTTTAACGACTTTGCCGGAGCTATGCAGAAGTTGAGTCTTCACGGTGTTTTGACCGGACGGCGAGGAGAGATCCGACGAAGGTGTGATGCGATCAACTAA

Protein Analysis

328

Amino Acids

36.12

Weight (kDa)

8.35

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 49 - 292 5.1e-74 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014084)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28200 AT5G40150
fragaria_vesca FvH4_6g50150 FvH4_6g50150
malus_domestica MD09G1039100.v1.1 MD17G1040100.v1.1
prunus_persica Prupe.3G278900_v2.0.a1
pyrus_communis pycom111g03080
rosa_chinensis RchiOBHm_Chr2g0170391
rosa_laevigata RLG00000021953
rosa_multiflora Rmu_sc0011601.1_g000014
rosa_rugosa Rorug02G0548700
rosa_samantha Rh2AG620200 Rh2BG631100 Rh2CG601000 Rh2DG644100
rosa_wichuraiana Rw2G051400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AccBSI CCGCTC 1 cut(s) 511
AccII CGCG 6 cut(s) 147, 285, 404, 465, 680, 869
AclWI GGATC 2 cut(s) 825, 952
AcoI YGGCCR 1 cut(s) 457
AcsI RAATTY 3 cut(s) 128, 706, 761
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 2 cut(s) 408, 658
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 4 cut(s) 271, 572, 739, 812
AluBI AGCT 8 cut(s) 197, 341, 350, 535, 552, 686, 698, 908
AluI AGCT 8 cut(s) 197, 341, 350, 535, 552, 686, 698, 908
Alw21I GWGCWC 1 cut(s) 598
Alw26I GTCTC 5 cut(s) 309, 382, 499, 803, 867
AlwI GGATC 2 cut(s) 825, 952
Ama87I CYCGRG 3 cut(s) 670, 800, 838
AoxI GGCC 1 cut(s) 457
ApeKI GCWGC 2 cut(s) 194, 234
ApoI RAATTY 3 cut(s) 128, 706, 761
Asp700I GAANNNNTTC 1 cut(s) 761
AspS9I GGNCC 1 cut(s) 434
AsuC2I CCSGG 3 cut(s) 312, 638, 661
AsuHPI GGTGA 3 cut(s) 22, 83, 148
AsuII TTCGAA 2 cut(s) 479, 704
AvaI CYCGRG 3 cut(s) 670, 800, 838
AvaII GGWCC 1 cut(s) 434
BbsI GAAGAC 2 cut(s) 727, 917
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 2 cut(s) 206, 221
BccI CCATC 3 cut(s) 41, 161, 611
BceAI ACGGC 4 cut(s) 247, 383, 444, 962
BcnI CCSGG 3 cut(s) 312, 638, 661
BcoDI GTCTC 5 cut(s) 309, 382, 499, 803, 867
BglII AGATCT 1 cut(s) 168
BisI GCNGC 5 cut(s) 81, 189, 192, 195, 235
BlsI GCNGC 5 cut(s) 82, 190, 193, 196, 236
Bme1390I CCNGG 3 cut(s) 312, 638, 661
Bme18I GGWCC 1 cut(s) 434
BmeT110I CYCGRG 3 cut(s) 670, 800, 838
BmgT120I GGNCC 1 cut(s) 434
BmrFI CCNGG 3 cut(s) 312, 638, 661
BmsI GCATC 2 cut(s) 510, 964
BpiI GAAGAC 2 cut(s) 727, 917
BplI GAGNNNNNCTC 2 cut(s) 580, 612
BpmI CTGGAG 1 cut(s) 538
Bpu14I TTCGAA 2 cut(s) 479, 704
BpuEI CTTGAG 1 cut(s) 5
BpuMI CCSGG 3 cut(s) 312, 638, 661
Bsa29I ATCGAT 1 cut(s) 540
BsaAI YACGTR 1 cut(s) 410
BsaHI GRCGYC 1 cut(s) 240
BsaI GGTCTC 2 cut(s) 803, 867
BsaJI CCNNGG 2 cut(s) 310, 454
BsaWI WCCGGW 1 cut(s) 941
BsaXI ACNNNNNCTCC 4 cut(s) 399, 429, 434, 464
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse3DI GCAATG 1 cut(s) 616
BseCI ATCGAT 1 cut(s) 540
BseDI CCNNGG 2 cut(s) 310, 454
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMI GCAATG 1 cut(s) 616
BseRI GAGGAG 6 cut(s) 32, 35, 38, 407, 494, 966
BseX3I CGGCCG 1 cut(s) 457
BseXI GCAGC 2 cut(s) 206, 221
Bsh1236I CGCG 6 cut(s) 147, 285, 404, 465, 680, 869
Bsh1285I CGRYCG 1 cut(s) 460
BshFI GGCC 1 cut(s) 459
BshVI ATCGAT 1 cut(s) 540
BsiEI CGRYCG 1 cut(s) 460
BsiHKAI GWGCWC 1 cut(s) 598
BsiHKCI CYCGRG 3 cut(s) 670, 800, 838
BsiSI CCGG 5 cut(s) 312, 637, 660, 903, 942
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 5 cut(s) 309, 382, 499, 803, 867
BsmBI CGTCTC 2 cut(s) 309, 499
BsmFI GGGAC 1 cut(s) 351
BsnI GGCC 1 cut(s) 459
Bso31I GGTCTC 2 cut(s) 803, 867
BsoBI CYCGRG 3 cut(s) 670, 800, 838
Bsp119I TTCGAA 2 cut(s) 479, 704
Bsp1286I GDGCHC 1 cut(s) 598
Bsp143I GATC 7 cut(s) 168, 412, 499, 541, 817, 957, 978
Bsp68I TCGCGA 1 cut(s) 465
BspANI GGCC 1 cut(s) 459
BspDI ATCGAT 1 cut(s) 540
BspFNI CGCG 6 cut(s) 147, 285, 404, 465, 680, 869
BspPI GGATC 2 cut(s) 825, 952
BspT104I TTCGAA 2 cut(s) 479, 704
BspTNI GGTCTC 2 cut(s) 803, 867
BsrBI CCGCTC 1 cut(s) 511
BsrDI GCAATG 1 cut(s) 616
BssECI CCNNGG 2 cut(s) 310, 454
BssMI GATC 7 cut(s) 168, 412, 499, 541, 817, 957, 978
BssNI GRCGYC 1 cut(s) 240
Bst4CI ACNGT 6 cut(s) 100, 221, 376, 427, 824, 932
Bst6I CTCTTC 1 cut(s) 212
BstACI GRCGYC 1 cut(s) 240
BstBAI YACGTR 1 cut(s) 410
BstBI TTCGAA 2 cut(s) 479, 704
BstF5I GGATG 1 cut(s) 36
BstFNI CGCG 6 cut(s) 147, 285, 404, 465, 680, 869
BstKTI GATC 7 cut(s) 171, 415, 502, 544, 820, 960, 981
BstMAI GTCTC 5 cut(s) 309, 382, 499, 803, 867
BstMBI GATC 7 cut(s) 168, 412, 499, 541, 817, 957, 978
BstMCI CGRYCG 1 cut(s) 460
BstMWI GCNNNNNNNGC 3 cut(s) 194, 347, 558
BstSCI CCNGG 3 cut(s) 310, 636, 659
BstUI CGCG 6 cut(s) 147, 285, 404, 465, 680, 869
BstV1I GCAGC 2 cut(s) 206, 221
BstV2I GAAGAC 2 cut(s) 727, 917
BstX2I RGATCY 2 cut(s) 168, 957
BstYI RGATCY 2 cut(s) 168, 957
BstZI CGGCCG 1 cut(s) 457
Bsu15I ATCGAT 1 cut(s) 540
BsuRI GGCC 1 cut(s) 459
BsuTUI ATCGAT 1 cut(s) 540
BtgZI GCGATG 1 cut(s) 379
BtsCI GGATG 1 cut(s) 36
BtuMI TCGCGA 1 cut(s) 465
Cfr13I GGNCC 1 cut(s) 434
ClaI ATCGAT 1 cut(s) 540
CseI GACGC 1 cut(s) 248
Csp6I GTAC 2 cut(s) 407, 657
CviAII CATG 1 cut(s) 120
CviQI GTAC 2 cut(s) 407, 657
DpnI GATC 7 cut(s) 170, 414, 501, 543, 819, 959, 980
DpnII GATC 7 cut(s) 168, 412, 499, 541, 817, 957, 978
DraI TTTAAA 1 cut(s) 690
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 457
EagI CGGCCG 1 cut(s) 457
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
EciI GGCGGA 2 cut(s) 20, 191
EclXI CGGCCG 1 cut(s) 457
Eco31I GGTCTC 2 cut(s) 803, 867
Eco32I GATATC 3 cut(s) 391, 528, 729
Eco47I GGWCC 1 cut(s) 434
Eco52I CGGCCG 1 cut(s) 457
Eco88I CYCGRG 3 cut(s) 670, 800, 838
EcoRI GAATTC 1 cut(s) 706
EcoRV GATATC 3 cut(s) 391, 528, 729
Esp3I CGTCTC 2 cut(s) 309, 499
FaeI CATG 1 cut(s) 123
FaiI YATR 6 cut(s) 121, 666, 749, 773, 865, 911
FaqI GGGAC 1 cut(s) 351
FatI CATG 1 cut(s) 119
FauI CCCGC 1 cut(s) 516
Fnu4HI GCNGC 5 cut(s) 81, 189, 192, 195, 235
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 5 cut(s) 81, 189, 192, 195, 235
GluI GCNGC 5 cut(s) 81, 189, 192, 195, 235
GsuI CTGGAG 1 cut(s) 538
HaeIII GGCC 1 cut(s) 459
HapII CCGG 5 cut(s) 312, 637, 660, 903, 942
HgaI GACGC 1 cut(s) 248
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 1 cut(s) 123
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HindIII AAGCTT 1 cut(s) 696
HpaII CCGG 5 cut(s) 312, 637, 660, 903, 942
HphI GGTGA 3 cut(s) 22, 83, 148
Hpy166II GTNNAC 3 cut(s) 434, 630, 643
Hpy188I TCNGA 9 cut(s) 338, 388, 499, 608, 756, 792, 817, 835, 962
Hpy188III TCNNGA 8 cut(s) 22, 353, 464, 471, 555, 572, 631, 781
Hpy8I GTNNAC 3 cut(s) 434, 630, 643
Hpy99I CGWCG 9 cut(s) 104, 242, 329, 404, 431, 465, 520, 746, 966
HpyAV CCTTC 3 cut(s) 70, 85, 960
HpyCH4III ACNGT 6 cut(s) 100, 221, 376, 427, 824, 932
HpyCH4IV ACGT 3 cut(s) 327, 409, 744
HpyCH4V TGCA 3 cut(s) 523, 621, 913
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 347, 558
HpySE526I ACGT 3 cut(s) 327, 409, 744
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 1 cut(s) 123
Kzo9I GATC 7 cut(s) 168, 412, 499, 541, 817, 957, 978
LmnI GCTCC 4 cut(s) 389, 516, 557, 905
LpnPI CCDG 7 cut(s) 325, 568, 650, 673, 794, 916, 955
Lsp1109I GCAGC 2 cut(s) 206, 221
LweI GCATC 2 cut(s) 510, 964
MaeII ACGT 3 cut(s) 327, 409, 744
MaeIII GTNAC 2 cut(s) 421, 804
MalI GATC 7 cut(s) 170, 414, 501, 543, 819, 959, 980
MbiI CCGCTC 1 cut(s) 511
MboI GATC 7 cut(s) 168, 412, 499, 541, 817, 957, 978
MboII GAAGA 5 cut(s) 199, 202, 249, 727, 917
MflI RGATCY 2 cut(s) 168, 957
MhlI GDGCHC 1 cut(s) 598
MluCI AATT 4 cut(s) 128, 545, 706, 761
MlyI GAGTC 2 cut(s) 745, 931
MmeI TCCRAC 3 cut(s) 203, 858, 985
MroXI GAANNNNTTC 1 cut(s) 761
MseI TTAA 2 cut(s) 689, 891
MspI CCGG 5 cut(s) 312, 637, 660, 903, 942
MspR9I CCNGG 3 cut(s) 312, 638, 661
MvnI CGCG 6 cut(s) 147, 285, 404, 465, 680, 869
MwoI GCNNNNNNNGC 3 cut(s) 194, 347, 558
NciI CCSGG 3 cut(s) 312, 638, 661
NdeII GATC 7 cut(s) 168, 412, 499, 541, 817, 957, 978
NlaIII CATG 1 cut(s) 123
NmeAIII GCCGAG 1 cut(s) 435
NruI TCGCGA 1 cut(s) 465
NspV TTCGAA 2 cut(s) 479, 704
PcsI WCGNNNNNNNCGW 3 cut(s) 324, 462, 469
PdmI GAANNNNTTC 1 cut(s) 761
PfeI GAWTC 8 cut(s) 25, 86, 287, 321, 467, 609, 675, 812
PkrI GCNGC 5 cut(s) 82, 190, 193, 196, 236
PleI GAGTC 2 cut(s) 745, 930
PpsI GAGTC 2 cut(s) 745, 930
Ppu21I YACGTR 1 cut(s) 410
PspPI GGNCC 1 cut(s) 434
PsuI RGATCY 2 cut(s) 168, 957
RruI TCGCGA 1 cut(s) 465
RsaI GTAC 2 cut(s) 408, 658
RsaNI GTAC 2 cut(s) 407, 657
SaqAI TTAA 2 cut(s) 689, 891
SatI GCNGC 5 cut(s) 81, 189, 192, 195, 235
Sau3AI GATC 7 cut(s) 168, 412, 499, 541, 817, 957, 978
Sau96I GGNCC 1 cut(s) 434
SchI GAGTC 2 cut(s) 745, 931
ScrFI CCNGG 3 cut(s) 312, 638, 661
SduI GDGCHC 1 cut(s) 598
SfaNI GCATC 2 cut(s) 510, 964
SfuI TTCGAA 2 cut(s) 479, 704
SinI GGWCC 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 4 cut(s) 128, 545, 706, 761
SspI AATATT 1 cut(s) 787
StyD4I CCNGG 3 cut(s) 310, 636, 659
TaaI ACNGT 6 cut(s) 100, 221, 376, 427, 824, 932
TaiI ACGT 3 cut(s) 330, 412, 747
TasI AATT 4 cut(s) 128, 545, 706, 761
TauI GCSGC 3 cut(s) 83, 191, 194
TfiI GAWTC 8 cut(s) 25, 86, 287, 321, 467, 609, 675, 812
Tru1I TTAA 2 cut(s) 689, 891
Tru9I TTAA 2 cut(s) 689, 891
TseI GCWGC 2 cut(s) 194, 234
TspDTI ATGAA 1 cut(s) 279
TspGWI ACGGA 4 cut(s) 235, 333, 556, 840
VpaK11BI GGWCC 1 cut(s) 434
XapI RAATTY 3 cut(s) 128, 706, 761
XmnI GAANNNNTTC 1 cut(s) 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.