Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012866

Physical Location & Seq

Genomic Coordinates Forward (+)

10924708 .. 10925813

Gene Structure 1106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G28917.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAGGAAGCGTCAGGTGGTGTTGAGGAGAGCCTCGCCAGAGGAACCTTCTAGAAGCTCGTCGACGGCTTCGTCTCTGACAGTGAGAACTGTGAGGTACGGAGAATGTCAGAAGAACCACGCTGCGGCGGTGGGAGGTTACGCTGTTGACGGCTGCCGTGAGTTCATGGCAAGCCGAGGAGAGGAAGGTACCGTGGCAGCGCTAACGTGCGCCGCCTGTGGCTGCCATCGCAGTTTCCATCGGAGAGAAATAGAAACCGAGGTTGTTTGCGACTGTAATTCACCTCCTTCTACTGGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0097159 GO:0099402 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

100

Amino Acids

10.79

Weight (kDa)

8.57

Isoelectric Point (pI)

86.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	31 - 84	4.9e-29	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28917
fragaria_vesca	FvH4_6g48620 FvH4_6g48620
malus_domestica	MD09G1051100.v1.1 MD17G1051200.v1.1
prunus_persica	Prupe.3G267900_v2.0.a1
pyrus_communis	pycom111g04210 pycom17g04590
rosa_chinensis	RchiOBHm_Chr2g0168531
rosa_laevigata	RLG00000021784
rosa_multiflora	Rmu_sc0007066.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082970
rosa_rugosa	Rorug02G0533800
rosa_samantha	Rh2AG603900 Rh2BG617000 Rh2CG585100 Rh2DG627600
rosa_wichuraiana	Rw2G050070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	70
Acc65I	GGTACC	1 cut(s)	188
AccB1I	GGYRCC	1 cut(s)	188
AccI	GTMKAC	1 cut(s)	62
AciI	CCGC	3 cut(s)	125, 128, 213
AfaI	GTAC	2 cut(s)	98, 190
AfeI	AGCGCT	1 cut(s)	201
AfiI	CCNNNNNNNGG	3 cut(s)	124, 181, 293
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	78
Aor51HI	AGCGCT	1 cut(s)	201
ApeKI	GCWGC	4 cut(s)	122, 153, 197, 222
Asp718I	GGTACC	1 cut(s)	188
AspLEI	GCGC	2 cut(s)	202, 212
AsuHPI	GGTGA	1 cut(s)	273
BanI	GGYRCC	1 cut(s)	188
BbvI	GCAGC	4 cut(s)	109, 140, 209, 209
BccI	CCATC	2 cut(s)	234, 246
BceAI	ACGGC	3 cut(s)	81, 141, 166
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	203
BisI	GCNGC	6 cut(s)	123, 126, 154, 198, 213, 223
BlsI	GCNGC	6 cut(s)	124, 127, 155, 199, 214, 224
BmiI	GGNNCC	2 cut(s)	45, 190
BsaJI	CCNNGG	3 cut(s)	175, 192, 258
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 181, 293
Bse1I	ACTGG	1 cut(s)	298
BseDI	CCNNGG	3 cut(s)	175, 192, 258
BseLI	CCNNNNNNNGG	3 cut(s)	124, 181, 293
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	2 cut(s)	40, 192
BseXI	GCAGC	4 cut(s)	109, 140, 209, 209
BshNI	GGYRCC	1 cut(s)	188
BslI	CCNNNNNNNGG	3 cut(s)	124, 181, 293
BsmAI	GTCTC	1 cut(s)	78
BsmBI	CGTCTC	1 cut(s)	78
BspACI	CCGC	3 cut(s)	125, 128, 213
BspLI	GGNNCC	2 cut(s)	45, 190
BspT107I	GGYRCC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	3 cut(s)	175, 192, 258
Bst4CI	ACNGT	4 cut(s)	82, 91, 193, 275
BstC8I	GCNNGC	1 cut(s)	172
BstDSI	CCRYGG	1 cut(s)	192
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	202, 212
BstMAI	GTCTC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	1 cut(s)	228
BstV1I	GCAGC	4 cut(s)	109, 140, 209, 209
BtgI	CCRYGG	1 cut(s)	192
BtgZI	GCGATG	1 cut(s)	212
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	172
CfoI	GCGC	2 cut(s)	202, 212
Csp6I	GTAC	2 cut(s)	97, 189
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	6 cut(s)	32, 57, 68, 153, 174, 222
CviKI_1	RGCY	6 cut(s)	32, 57, 68, 153, 174, 222
CviQI	GTAC	2 cut(s)	97, 189
DrdI	GACNNNNNNGTC	1 cut(s)	70
DseDI	GACNNNNNNGTC	1 cut(s)	70
Eco47III	AGCGCT	1 cut(s)	201
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	1 cut(s)	169
FaiI	YATR	1 cut(s)	167
FatI	CATG	1 cut(s)	165
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	6 cut(s)	123, 126, 154, 198, 213, 223
Fsp4HI	GCNGC	6 cut(s)	123, 126, 154, 198, 213, 223
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	2 cut(s)	201, 211
GluI	GCNGC	6 cut(s)	123, 126, 154, 198, 213, 223
HaeII	RGCGCY	1 cut(s)	203
HhaI	GCGC	2 cut(s)	202, 212
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	2 cut(s)	200, 210
HinP1I	GCGC	2 cut(s)	200, 210
HincII	GTYRAC	2 cut(s)	63, 148
HindII	GTYRAC	2 cut(s)	63, 148
HphI	GGTGA	1 cut(s)	273
Hpy166II	GTNNAC	2 cut(s)	63, 148
Hpy188I	TCNGA	3 cut(s)	78, 111, 243
Hpy188III	TCNNGA	1 cut(s)	51
Hpy8I	GTNNAC	2 cut(s)	63, 148
Hpy99I	CGWCG	2 cut(s)	64, 67
HpyAV	CCTTC	3 cut(s)	57, 179, 297
HpyCH4III	ACNGT	4 cut(s)	82, 91, 193, 275
HpyCH4IV	ACGT	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	206
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	2 cut(s)	200, 210
KpnI	GGTACC	1 cut(s)	192
LpnPI	CCDG	3 cut(s)	51, 229, 279
Lsp1109I	GCAGC	4 cut(s)	109, 140, 209, 209
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	137
MboII	GAAGA	1 cut(s)	124
MluCI	AATT	2 cut(s)	277, 298
MnlI	CCTC	9 cut(s)	18, 34, 43, 87, 128, 170, 175, 253, 294
MwoI	GCNNNNNNNGC	1 cut(s)	228
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	2 cut(s)	45, 190
NmeAIII	GCCGAG	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PkrI	GCNGC	6 cut(s)	124, 127, 155, 199, 214, 224
PspN4I	GGNNCC	2 cut(s)	45, 190
RsaI	GTAC	2 cut(s)	98, 190
RsaNI	GTAC	2 cut(s)	97, 189
SalI	GTCGAC	1 cut(s)	61
SatI	GCNGC	6 cut(s)	123, 126, 154, 198, 213, 223
SetI	ASST	9 cut(s)	18, 49, 59, 98, 139, 190, 209, 264, 286
SgrDI	CGTCGACG	1 cut(s)	61
Sse9I	AATT	2 cut(s)	277, 298
SsiI	CCGC	3 cut(s)	125, 128, 213
SspMI	CTAG	1 cut(s)	51
TaaI	ACNGT	4 cut(s)	82, 91, 193, 275
TaiI	ACGT	1 cut(s)	209
TaqI	TCGA	1 cut(s)	62
TasI	AATT	2 cut(s)	277, 298
TauI	GCSGC	2 cut(s)	128, 215
TscAI	CASTG	1 cut(s)	87
TseI	GCWGC	4 cut(s)	122, 153, 197, 222
TspDTI	ATGAA	1 cut(s)	154
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	87
XbaI	TCTAGA	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	62
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.