Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012866

Physical Location & Seq

Genomic Coordinates Reverse (-)

36594993 .. 36597890

Gene Structure 2898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48620.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAGGAAGCGTCAGGTTGTTGTGAGGAGAGAAGAACCTTCATCTTATACCATTAGGAACGTGAGATATGTAGAGTGCCAGAAGAATCATGCCGCCGGAGTCGGAGGGTATGCTGTTGATGGGTGCAGGGAGTTCATGGCGAGTGGAGAGGAGGGCACAGCTGCACTGACCTGCGCCGCCTGTGGATGCCACCGGAACTTCCACCGGAGAGAAGTCGAGACTGTGTGCGAGTGCTCTTCACCCACTTCGACTAATGAGGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0097159 GO:0099402 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

89

Amino Acids

9.69

Weight (kDa)

7.59

Isoelectric Point (pI)

63.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	20 - 72	4.6e-29	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28917
fragaria_vesca	FvH4_6g48620 FvH4_6g48620
malus_domestica	MD09G1051100.v1.1 MD17G1051200.v1.1
prunus_persica	Prupe.3G267900_v2.0.a1
pyrus_communis	pycom111g04210 pycom17g04590
rosa_chinensis	RchiOBHm_Chr2g0168531
rosa_laevigata	RLG00000021784
rosa_multiflora	Rmu_sc0007066.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082970
rosa_rugosa	Rorug02G0533800
rosa_samantha	Rh2AG603900 Rh2BG617000 Rh2CG585100 Rh2DG627600
rosa_wichuraiana	Rw2G050070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	179
AciI	CCGC	2 cut(s)	93, 177
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
Alw21I	GWGCWC	1 cut(s)	236
Alw26I	GTCTC	1 cut(s)	212
ApeKI	GCWGC	2 cut(s)	161, 260
AspLEI	GCGC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	2 cut(s)	148, 247
BccI	CCATC	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	179
BisI	GCNGC	4 cut(s)	93, 162, 177, 261
BlsI	GCNGC	4 cut(s)	94, 163, 178, 262
BmsI	GCATC	1 cut(s)	176
BsaWI	WCCGGW	2 cut(s)	192, 204
BseGI	GGATG	1 cut(s)	191
BseRI	GAGGAG	2 cut(s)	40, 164
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	2 cut(s)	148, 247
BsgI	GTGCAG	2 cut(s)	145, 147
BsiHKAI	GWGCWC	1 cut(s)	236
BsiSI	CCGG	3 cut(s)	96, 193, 205
BsmAI	GTCTC	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	158, 236
BspACI	CCGC	2 cut(s)	93, 177
BspMI	ACCTGC	1 cut(s)	179
BspQI	GCTCTTC	1 cut(s)	241
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	176
BstMAI	GTCTC	1 cut(s)	212
BstSLI	GKGCMC	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	148, 247
BtsCI	GGATG	1 cut(s)	191
BtsIMutI	CAGTG	1 cut(s)	164
BveI	ACCTGC	1 cut(s)	179
CfoI	GCGC	1 cut(s)	176
CviAII	CATG	2 cut(s)	89, 136
CviJI	RGCY	2 cut(s)	161, 260
CviKI_1	RGCY	2 cut(s)	161, 260
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
FaeI	CATG	2 cut(s)	92, 139
FaiI	YATR	5 cut(s)	48, 69, 90, 111, 137
FatI	CATG	2 cut(s)	88, 135
Fnu4HI	GCNGC	4 cut(s)	93, 162, 177, 261
FokI	GGATG	1 cut(s)	198
Fsp4HI	GCNGC	4 cut(s)	93, 162, 177, 261
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	4 cut(s)	93, 162, 177, 261
HapII	CCGG	3 cut(s)	96, 193, 205
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	2 cut(s)	92, 139
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HinfI	GANTC	2 cut(s)	85, 99
HpaII	CCGG	3 cut(s)	96, 193, 205
HphI	GGTGA	1 cut(s)	231
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	1 cut(s)	217
HpyAV	CCTTC	1 cut(s)	48
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	126, 164
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	92, 139
HspAI	GCGC	1 cut(s)	174
LguI	GCTCTTC	1 cut(s)	241
LpnPI	CCDG	7 cut(s)	92, 109, 112, 184, 193, 206, 218
Lsp1109I	GCAGC	2 cut(s)	148, 247
LweI	GCATC	1 cut(s)	176
MaeII	ACGT	1 cut(s)	60
MboII	GAAGA	3 cut(s)	44, 94, 228
MhlI	GDGCHC	2 cut(s)	158, 236
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	5 cut(s)	18, 98, 142, 145, 250
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	3 cut(s)	96, 193, 205
NlaIII	CATG	2 cut(s)	92, 139
PciSI	GCTCTTC	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	4 cut(s)	94, 163, 178, 262
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PvuII	CAGCTG	1 cut(s)	161
SapI	GCTCTTC	1 cut(s)	241
SatI	GCNGC	4 cut(s)	93, 162, 177, 261
SchI	GAGTC	1 cut(s)	108
SduI	GDGCHC	2 cut(s)	158, 236
SetI	ASST	5 cut(s)	18, 40, 63, 163, 173
SfaNI	GCATC	1 cut(s)	176
SsiI	CCGC	2 cut(s)	93, 177
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	216, 248
TauI	GCSGC	2 cut(s)	95, 179
TfiI	GAWTC	1 cut(s)	85
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	2 cut(s)	161, 260
TspDTI	ATGAA	2 cut(s)	30, 124
TspRI	CASTG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.