Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007066.1

Orthogroup ID

OG0012866

Physical Location & Seq

Genomic Coordinates Forward (+)

26614 .. 26874

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007066.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atgaggaagcgccaggttgtcgtgaggagagaagaaccttcatctaacaccattaggaacgtcagatacgtagagtgccagaagaatcatgccgccggagtcggagggtatgctgttgatgggtgcagggagttcatggcgagtggagaggagggcacagctgcactcacctgcgccgcctgcggctgccaccggaacttccaccgaagagaagttgagactgtgtgcgagtgctcttcacctacttcaaccgaggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0097159 GO:0099402 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

86

Amino Acids

9.45

Weight (kDa)

7.6

Isoelectric Point (pI)

68.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28917
fragaria_vesca	FvH4_6g48620 FvH4_6g48620
malus_domestica	MD09G1051100.v1.1 MD17G1051200.v1.1
prunus_persica	Prupe.3G267900_v2.0.a1
pyrus_communis	pycom111g04210 pycom17g04590
rosa_chinensis	RchiOBHm_Chr2g0168531
rosa_laevigata	RLG00000021784
rosa_multiflora	Rmu_sc0007066.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082970
rosa_rugosa	Rorug02G0533800
rosa_samantha	Rh2AG603900 Rh2BG617000 Rh2CG585100 Rh2DG627600
rosa_wichuraiana	Rw2G050070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	179
Acc36I	ACCTGC	1 cut(s)	179
AciI	CCGC	3 cut(s)	93, 177, 183
AgsI	TTSAA	1 cut(s)	249
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
Alw21I	GWGCWC	1 cut(s)	236
Alw26I	GTCTC	1 cut(s)	212
ApeKI	GCWGC	2 cut(s)	161, 186
AspLEI	GCGC	2 cut(s)	12, 176
AsuHPI	GGTGA	2 cut(s)	160, 231
BaeGI	GKGCMC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	2 cut(s)	148, 173
BccI	CCATC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	14
BcoDI	GTCTC	1 cut(s)	212
BfoI	RGCGCY	1 cut(s)	13
BfuAI	ACCTGC	1 cut(s)	179
BisI	GCNGC	5 cut(s)	93, 162, 177, 184, 187
BlsI	GCNGC	5 cut(s)	94, 163, 178, 185, 188
Bme1390I	CCNGG	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	14
BsaAI	YACGTR	1 cut(s)	70
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	252
BseRI	GAGGAG	2 cut(s)	40, 164
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	2 cut(s)	148, 173
BsgI	GTGCAG	2 cut(s)	145, 147
BsiHKAI	GWGCWC	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	96, 193
BsmAI	GTCTC	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	158, 236
BspACI	CCGC	3 cut(s)	93, 177, 183
BspMI	ACCTGC	1 cut(s)	179
BspQI	GCTCTTC	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	2 cut(s)	202, 241
BstBAI	YACGTR	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	181
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	2 cut(s)	12, 176
BstMAI	GTCTC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstNI	CCWGG	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	12
BstSLI	GKGCMC	1 cut(s)	158
BstSNI	TACGTA	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	148, 173
BveI	ACCTGC	1 cut(s)	179
Cac8I	GCNNGC	1 cut(s)	181
CfoI	GCGC	2 cut(s)	12, 176
CviAII	CATG	2 cut(s)	89, 136
CviJI	RGCY	3 cut(s)	161, 186, 257
CviKI_1	RGCY	3 cut(s)	161, 186, 257
Eam1104I	CTCTTC	2 cut(s)	202, 241
EarI	CTCTTC	2 cut(s)	202, 241
Eco105I	TACGTA	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	12
FaeI	CATG	2 cut(s)	92, 139
FaiI	YATR	3 cut(s)	90, 111, 137
FatI	CATG	2 cut(s)	88, 135
Fnu4HI	GCNGC	5 cut(s)	93, 162, 177, 184, 187
Fsp4HI	GCNGC	5 cut(s)	93, 162, 177, 184, 187
GlaI	GCGC	2 cut(s)	11, 175
GluI	GCNGC	5 cut(s)	93, 162, 177, 184, 187
HaeII	RGCGCY	1 cut(s)	13
HapII	CCGG	2 cut(s)	96, 193
HhaI	GCGC	2 cut(s)	12, 176
Hin1II	CATG	2 cut(s)	92, 139
Hin6I	GCGC	2 cut(s)	10, 174
HinP1I	GCGC	2 cut(s)	10, 174
HinfI	GANTC	2 cut(s)	85, 99
HpaII	CCGG	2 cut(s)	96, 193
HphI	GGTGA	2 cut(s)	160, 231
Hpy188I	TCNGA	2 cut(s)	65, 104
Hpy188III	TCNNGA	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	48
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	2 cut(s)	60, 69
HpyCH4V	TGCA	2 cut(s)	126, 164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpySE526I	ACGT	2 cut(s)	60, 69
Hsp92II	CATG	2 cut(s)	92, 139
HspAI	GCGC	2 cut(s)	10, 174
LguI	GCTCTTC	1 cut(s)	241
LpnPI	CCDG	7 cut(s)	26, 92, 109, 112, 184, 193, 206
Lsp1109I	GCAGC	2 cut(s)	148, 173
MaeII	ACGT	2 cut(s)	60, 69
MboII	GAAGA	4 cut(s)	44, 94, 219, 228
MhlI	GDGCHC	2 cut(s)	158, 236
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	5 cut(s)	18, 98, 142, 145, 247
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	2 cut(s)	96, 193
MspR9I	CCNGG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	180
NlaIII	CATG	2 cut(s)	92, 139
PaqCI	CACCTGC	1 cut(s)	179
PciSI	GCTCTTC	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	5 cut(s)	94, 163, 178, 185, 188
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Ppu21I	YACGTR	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	12
PsrI	GAACNNNNNNTAC	2 cut(s)	50, 82
PvuII	CAGCTG	1 cut(s)	161
SapI	GCTCTTC	1 cut(s)	241
SatI	GCNGC	5 cut(s)	93, 162, 177, 184, 187
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	14
SduI	GDGCHC	2 cut(s)	158, 236
SetI	ASST	7 cut(s)	18, 40, 63, 72, 163, 173, 244
SnaBI	TACGTA	1 cut(s)	70
SsiI	CCGC	3 cut(s)	93, 177, 183
StyD4I	CCNGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	2 cut(s)	63, 72
TauI	GCSGC	3 cut(s)	95, 179, 186
TfiI	GAWTC	1 cut(s)	85
TseI	GCWGC	2 cut(s)	161, 186
TspDTI	ATGAA	2 cut(s)	30, 124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.