Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012866

Physical Location & Seq

Genomic Coordinates Reverse (-)

78199170 .. 78200962

Gene Structure 1793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021784

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAGGAAGCGCCAGGTTGTCGTGAGGAGAGAAGAACCTTCATCTAACACCATTAGGAACGTGAGATACGTAGAGTGCCAGAAGAATCATGCCGCCGGAGTCGGAGGGTATGCTGTTGATGGGTGCAGGGAGTTCATGGCGAGTGGAGAGGAGGGCACAGCTGCACTCACCTGCGCCGCCTGTGGCTGCCACCGGAACTTCCACCGAAGAGAAGTTGAGACTGTATACTCTTATCAGTCTTATGCCAACTCATTGCCATCTGGTGCCATTGCCGTCCTCAACAAAAGATTACTGTTTGGAAACAAAATTGTACATATTTTAACCCCAGATATACGGGCAATCTTAATAAGATGTGAGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0097159 GO:0099402 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

121

Amino Acids

13.37

Weight (kDa)

9.21

Isoelectric Point (pI)

59.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	20 - 72	1e-28	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28917
fragaria_vesca	FvH4_6g48620 FvH4_6g48620
malus_domestica	MD09G1051100.v1.1 MD17G1051200.v1.1
prunus_persica	Prupe.3G267900_v2.0.a1
pyrus_communis	pycom111g04210 pycom17g04590
rosa_chinensis	RchiOBHm_Chr2g0168531
rosa_laevigata	RLG00000021784
rosa_multiflora	Rmu_sc0007066.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082970
rosa_rugosa	Rorug02G0533800
rosa_samantha	Rh2AG603900 Rh2BG617000 Rh2CG585100 Rh2DG627600
rosa_wichuraiana	Rw2G050070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	179
Acc36I	ACCTGC	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	263
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	2 cut(s)	93, 177
AfaI	GTAC	1 cut(s)	312
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
Alw26I	GTCTC	2 cut(s)	212, 350
ApeKI	GCWGC	2 cut(s)	161, 186
AspLEI	GCGC	2 cut(s)	12, 176
AsuHPI	GGTGA	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	263
BbvI	GCAGC	2 cut(s)	148, 173
BccI	CCATC	2 cut(s)	113, 265
BceAI	ACGGC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	14
BcoDI	GTCTC	2 cut(s)	212, 350
BfoI	RGCGCY	1 cut(s)	13
BfuAI	ACCTGC	1 cut(s)	179
BisI	GCNGC	4 cut(s)	93, 162, 177, 187
BlsI	GCNGC	4 cut(s)	94, 163, 178, 188
Bme1390I	CCNGG	1 cut(s)	14
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	14
BsaAI	YACGTR	1 cut(s)	70
BsaWI	WCCGGW	1 cut(s)	192
Bse3DI	GCAATG	2 cut(s)	251, 267
BseBI	CCWGG	1 cut(s)	14
BseMI	GCAATG	2 cut(s)	251, 267
BseRI	GAGGAG	2 cut(s)	40, 164
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	2 cut(s)	148, 173
BsgI	GTGCAG	2 cut(s)	145, 147
BshNI	GGYRCC	1 cut(s)	263
BsiSI	CCGG	2 cut(s)	96, 193
BsmAI	GTCTC	2 cut(s)	212, 350
BsmBI	CGTCTC	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp1407I	TGTACA	1 cut(s)	310
BspACI	CCGC	2 cut(s)	93, 177
BspLI	GGNNCC	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	263
BsrDI	GCAATG	2 cut(s)	251, 267
BsrGI	TGTACA	1 cut(s)	310
BssNAI	GTATAC	1 cut(s)	226
Bst1107I	GTATAC	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	2 cut(s)	223, 294
Bst6I	CTCTTC	1 cut(s)	202
BstAUI	TGTACA	1 cut(s)	310
BstBAI	YACGTR	1 cut(s)	70
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	2 cut(s)	12, 176
BstMAI	GTCTC	2 cut(s)	212, 350
BstNI	CCWGG	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	12
BstSLI	GKGCMC	1 cut(s)	158
BstSNI	TACGTA	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	148, 173
BstZ17I	GTATAC	1 cut(s)	226
BveI	ACCTGC	1 cut(s)	179
CfoI	GCGC	2 cut(s)	12, 176
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	2 cut(s)	89, 136
CviJI	RGCY	2 cut(s)	161, 186
CviKI_1	RGCY	2 cut(s)	161, 186
CviQI	GTAC	1 cut(s)	311
Eam1104I	CTCTTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	202
Eco105I	TACGTA	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	350
FaeI	CATG	2 cut(s)	92, 139
FaiI	YATR	7 cut(s)	90, 111, 137, 226, 243, 315, 332
FatI	CATG	2 cut(s)	88, 135
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	4 cut(s)	93, 162, 177, 187
Fsp4HI	GCNGC	4 cut(s)	93, 162, 177, 187
GlaI	GCGC	2 cut(s)	11, 175
GluI	GCNGC	4 cut(s)	93, 162, 177, 187
HaeII	RGCGCY	1 cut(s)	13
HapII	CCGG	2 cut(s)	96, 193
HhaI	GCGC	2 cut(s)	12, 176
Hin1II	CATG	2 cut(s)	92, 139
Hin6I	GCGC	2 cut(s)	10, 174
HinP1I	GCGC	2 cut(s)	10, 174
HinfI	GANTC	2 cut(s)	85, 99
HpaII	CCGG	2 cut(s)	96, 193
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	48
HpyCH4III	ACNGT	2 cut(s)	223, 294
HpyCH4IV	ACGT	3 cut(s)	60, 69, 359
HpyCH4V	TGCA	2 cut(s)	126, 164
HpySE526I	ACGT	3 cut(s)	60, 69, 359
Hsp92II	CATG	2 cut(s)	92, 139
HspAI	GCGC	2 cut(s)	10, 174
LpnPI	CCDG	9 cut(s)	26, 92, 109, 112, 184, 193, 206, 246, 339
Lsp1109I	GCAGC	2 cut(s)	148, 173
MaeII	ACGT	3 cut(s)	60, 69, 359
MboII	GAAGA	3 cut(s)	44, 94, 219
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	5 cut(s)	18, 98, 142, 145, 287
MseI	TTAA	2 cut(s)	320, 344
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	2 cut(s)	96, 193
MspR9I	CCNGG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	14
NlaIII	CATG	2 cut(s)	92, 139
NlaIV	GGNNCC	1 cut(s)	265
PaqCI	CACCTGC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	4 cut(s)	94, 163, 178, 188
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Ppu21I	YACGTR	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	265
PsrI	GAACNNNNNNTAC	2 cut(s)	50, 82
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
SaqAI	TTAA	2 cut(s)	320, 344
SatI	GCNGC	4 cut(s)	93, 162, 177, 187
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	7 cut(s)	18, 40, 63, 72, 163, 173, 362
SnaBI	TACGTA	1 cut(s)	70
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	2 cut(s)	93, 177
StyD4I	CCNGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	223, 294
TaiI	ACGT	3 cut(s)	63, 72, 362
TasI	AATT	1 cut(s)	306
TatI	WGTACW	1 cut(s)	310
TauI	GCSGC	2 cut(s)	95, 179
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	2 cut(s)	320, 344
Tru9I	TTAA	2 cut(s)	320, 344
TseI	GCWGC	2 cut(s)	161, 186
TspDTI	ATGAA	2 cut(s)	30, 124
XmiI	GTMKAC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.