Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0012866

Physical Location & Seq

Genomic Coordinates Forward (+)

3395078 .. 3395350

Gene Structure 273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1051100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAGGAAGCGGCAAGTAGTTTTGAGAAGAACAGAACAAGCTTCAGCAGCTTCATCTTTCACCGTCGTGAGATATGGAGAGTGCCAGAAGAACCATGCTGCTGGGGTCGGAGGCTACGCTGTTGACGGATGCAGAGAGTTCATGGCAAGTAATGGAGAGGAGGGAACAACTGCTGCACTCACCTGTGCTGCTTGTGGCTGCCACAGGAACTTCCACAGACGAGAAGTCGAGACCGTCTGCGAGTGCTCTTCGCCTTCTTCAAATGGTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0097159 GO:0099402 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

91

Amino Acids

9.62

Weight (kDa)

8.23

Isoelectric Point (pI)

60.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	23 - 76	1.1e-29	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28917
fragaria_vesca	FvH4_6g48620 FvH4_6g48620
malus_domestica	MD09G1051100.v1.1 MD17G1051200.v1.1
prunus_persica	Prupe.3G267900_v2.0.a1
pyrus_communis	pycom111g04210 pycom17g04590
rosa_chinensis	RchiOBHm_Chr2g0168531
rosa_laevigata	RLG00000021784
rosa_multiflora	Rmu_sc0007066.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082970
rosa_rugosa	Rorug02G0533800
rosa_samantha	Rh2AG603900 Rh2BG617000 Rh2CG585100 Rh2DG627600
rosa_wichuraiana	Rw2G050070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AciI	CCGC	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	261
AhdI	GACNNNNNGTC	1 cut(s)	224
AleI	CACNNNNGTG	1 cut(s)	65
AluBI	AGCT	2 cut(s)	41, 50
AluI	AGCT	2 cut(s)	41, 50
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	1 cut(s)	224
ApeKI	GCWGC	5 cut(s)	47, 98, 173, 188, 198
AsuHPI	GGTGA	2 cut(s)	52, 172
BanI	GGYRCC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	5 cut(s)	59, 85, 160, 175, 185
BcoDI	GTCTC	1 cut(s)	224
BisI	GCNGC	6 cut(s)	11, 48, 99, 174, 189, 199
BlsI	GCNGC	6 cut(s)	12, 49, 100, 175, 190, 200
BmeRI	GACNNNNNGTC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	268
BmsI	GCATC	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	224
BseGI	GGATG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	5 cut(s)	59, 85, 160, 175, 185
BseYI	CCCAGC	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	159
BshNI	GGYRCC	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	224
Bso31I	GGTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	248
BspACI	CCGC	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	268
BspQI	GCTCTTC	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	224
Bst4CI	ACNGT	2 cut(s)	64, 235
Bst6I	CTCTTC	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	134
BstMAI	GTCTC	1 cut(s)	224
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstV1I	GCAGC	5 cut(s)	59, 85, 160, 175, 185
BstXI	CCANNNNNNTGG	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	134
CviAII	CATG	2 cut(s)	95, 142
CviJI	RGCY	4 cut(s)	41, 50, 114, 198
CviKI_1	RGCY	4 cut(s)	41, 50, 114, 198
DriI	GACNNNNNGTC	1 cut(s)	224
Eam1104I	CTCTTC	1 cut(s)	253
Eam1105I	GACNNNNNGTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	253
Eco31I	GGTCTC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	27
FaeI	CATG	2 cut(s)	98, 145
FaiI	YATR	3 cut(s)	75, 96, 143
FatI	CATG	2 cut(s)	94, 141
Fnu4HI	GCNGC	6 cut(s)	11, 48, 99, 174, 189, 199
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	6 cut(s)	11, 48, 99, 174, 189, 199
GluI	GCNGC	6 cut(s)	11, 48, 99, 174, 189, 199
GsaI	CCCAGC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	98, 145
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	39
HphI	GGTGA	2 cut(s)	52, 172
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	2 cut(s)	67, 229
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	2 cut(s)	64, 235
HpyCH4V	TGCA	2 cut(s)	132, 176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
Hsp92II	CATG	2 cut(s)	98, 145
LguI	GCTCTTC	1 cut(s)	253
LpnPI	CCDG	4 cut(s)	87, 98, 190, 196
Lsp1109I	GCAGC	5 cut(s)	59, 85, 160, 175, 185
LweI	GCATC	1 cut(s)	119
MboII	GAAGA	4 cut(s)	39, 100, 240, 249
MhlI	GDGCHC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	3 cut(s)	104, 151, 154
MslI	CAYNNNNRTG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	47
NlaIII	CATG	2 cut(s)	98, 145
NlaIV	GGNNCC	1 cut(s)	268
OliI	CACNNNNGTG	1 cut(s)	65
PciSI	GCTCTTC	1 cut(s)	253
PkrI	GCNGC	6 cut(s)	12, 49, 100, 175, 190, 200
PspFI	CCCAGC	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	253
SatI	GCNGC	6 cut(s)	11, 48, 99, 174, 189, 199
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	3 cut(s)	43, 52, 185
SfaNI	GCATC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	65
SsiI	CCGC	1 cut(s)	10
TaaI	ACNGT	2 cut(s)	64, 235
TaqI	TCGA	1 cut(s)	228
TauI	GCSGC	1 cut(s)	13
TseI	GCWGC	5 cut(s)	47, 98, 173, 188, 198
TspDTI	ATGAA	2 cut(s)	42, 130
TspGWI	ACGGA	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.