Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0012866

Physical Location & Seq

Genomic Coordinates Forward (+)

2553239 .. 2553508

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAGGAAGCGGCAAGTAGTTTTGAGAAGAACAGAACAAGCTTCGGCATCATCTTTCACCGTCGTGAGATACGGAGAGTGCCAGAAGAACCATGCTGCTGCGGTCGGAGGCTACGCTGTTGACGGATGCAGAGAGTTCATGGCAAGCAACGGAGAGGAGGGAACAACTGCTGCACTCACCTGTGCTGCTTGTGGCTGCCACAGGAACTTCCACAGACGAGAAGTCGAGACTGTCTGCGAGTGCTCTTCGCCTTCTTCAAATGGTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010022 GO:0010073 GO:0010582 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048507 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0097159 GO:0099402 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

90

Amino Acids

9.56

Weight (kDa)

8.23

Isoelectric Point (pI)

61.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	22 - 75	7.4e-30	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28917
fragaria_vesca	FvH4_6g48620 FvH4_6g48620
malus_domestica	MD09G1051100.v1.1 MD17G1051200.v1.1
prunus_persica	Prupe.3G267900_v2.0.a1
pyrus_communis	pycom111g04210 pycom17g04590
rosa_chinensis	RchiOBHm_Chr2g0168531
rosa_laevigata	RLG00000021784
rosa_multiflora	Rmu_sc0007066.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082970
rosa_rugosa	Rorug02G0533800
rosa_samantha	Rh2AG603900 Rh2BG617000 Rh2CG585100 Rh2DG627600
rosa_wichuraiana	Rw2G050070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	263
AciI	CCGC	2 cut(s)	10, 101
AgsI	TTSAA	1 cut(s)	258
AhdI	GACNNNNNGTC	1 cut(s)	221
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
Alw21I	GWGCWC	1 cut(s)	245
Alw26I	GTCTC	1 cut(s)	221
ApeKI	GCWGC	5 cut(s)	95, 98, 170, 185, 195
AsuHPI	GGTGA	2 cut(s)	49, 169
BanI	GGYRCC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	245
BbvI	GCAGC	5 cut(s)	82, 85, 157, 172, 182
BcoDI	GTCTC	1 cut(s)	221
BisI	GCNGC	6 cut(s)	11, 96, 99, 171, 186, 196
BlsI	GCNGC	6 cut(s)	12, 97, 100, 172, 187, 197
BmeRI	GACNNNNNGTC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	265
BmsI	GCATC	2 cut(s)	56, 116
BseGI	GGATG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	5 cut(s)	82, 85, 157, 172, 182
BsgI	GTGCAG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	105
BshNI	GGYRCC	1 cut(s)	263
BsiEI	CGRYCG	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	245
BspACI	CCGC	2 cut(s)	10, 101
BspLI	GGNNCC	1 cut(s)	265
BspQI	GCTCTTC	1 cut(s)	250
BspT107I	GGYRCC	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	61, 232
Bst6I	CTCTTC	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	131
BstMAI	GTCTC	1 cut(s)	221
BstMCI	CGRYCG	1 cut(s)	105
BstV1I	GCAGC	5 cut(s)	82, 85, 157, 172, 182
BtsCI	GGATG	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	145
CviAII	CATG	2 cut(s)	92, 139
CviJI	RGCY	3 cut(s)	41, 111, 195
CviKI_1	RGCY	3 cut(s)	41, 111, 195
DriI	GACNNNNNGTC	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	250
Eam1105I	GACNNNNNGTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	250
FaeI	CATG	2 cut(s)	95, 142
FaiI	YATR	2 cut(s)	93, 140
FatI	CATG	2 cut(s)	91, 138
Fnu4HI	GCNGC	6 cut(s)	11, 96, 99, 171, 186, 196
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	6 cut(s)	11, 96, 99, 171, 186, 196
GluI	GCNGC	6 cut(s)	11, 96, 99, 171, 186, 196
Hin1II	CATG	2 cut(s)	95, 142
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	39
HphI	GGTGA	2 cut(s)	49, 169
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	107
Hpy188III	TCNNGA	2 cut(s)	64, 226
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	261
HpyCH4III	ACNGT	2 cut(s)	61, 232
HpyCH4V	TGCA	2 cut(s)	129, 173
Hsp92II	CATG	2 cut(s)	95, 142
LguI	GCTCTTC	1 cut(s)	250
LpnPI	CCDG	3 cut(s)	95, 187, 193
Lsp1109I	GCAGC	5 cut(s)	82, 85, 157, 172, 182
LweI	GCATC	2 cut(s)	56, 116
MboII	GAAGA	4 cut(s)	39, 97, 237, 246
MhlI	GDGCHC	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	3 cut(s)	101, 148, 151
MslI	CAYNNNNRTG	1 cut(s)	62
NlaIII	CATG	2 cut(s)	95, 142
NlaIV	GGNNCC	1 cut(s)	265
OliI	CACNNNNGTG	1 cut(s)	62
PciSI	GCTCTTC	1 cut(s)	250
PkrI	GCNGC	6 cut(s)	12, 97, 100, 172, 187, 197
PspN4I	GGNNCC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	62
SapI	GCTCTTC	1 cut(s)	250
SatI	GCNGC	6 cut(s)	11, 96, 99, 171, 186, 196
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	2 cut(s)	43, 182
SfaNI	GCATC	2 cut(s)	56, 116
SmiMI	CAYNNNNRTG	1 cut(s)	62
SsiI	CCGC	2 cut(s)	10, 101
TaaI	ACNGT	2 cut(s)	61, 232
TaqI	TCGA	1 cut(s)	225
TauI	GCSGC	1 cut(s)	13
TseI	GCWGC	5 cut(s)	95, 98, 170, 185, 195
TspDTI	ATGAA	1 cut(s)	127
TspGWI	ACGGA	3 cut(s)	87, 138, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.