AT3G29170

Transmembrane protein 230-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012474
Physical Location & Seq
Reverse (-)
11135951 .. 11138010
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G29170.1

Sequence Viewer

Length: 366 bp
ATGGCGTCAAGGAGAAGTGTACGGTATGCACAGCTTCCAGGAGATGAAGATGATGAAGGCTATGGAAATGGTGTTGGTGAAAGGAGAGATTTCGATCCTCGGTTCGATTATTCACCGAAAGCATTTGATAGAGTTCCATGGAAATCTATAGCATTAGCTGTGTTTCTTTTGTTTCTTGGTTGCTTGCTTCTTCTTTTGTCGTTTTTTATCTTCATTGGTCACATGGAAGGAGATAGCTCTCAAGGTTATGCGTTACTTGTTCTTGGGATCCTTACTTTTCTCCCTGGTTTCTACGAGACCCGAATTGCTTACTACTCATGGAGAGGAGCTGAAGGGTACCGTTTTGCAGCCATTCCCTCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF872

Protein Analysis

121

Amino Acids

13.76

Weight (kDa)

5.3

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM_230_134 PF05915 9 - 121 1.2e-27 Transmembrane proteins 230/134
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29170 AT3G29170
fragaria_vesca FvH4_6g47840
malus_domestica MD09G1056300.v1.1 MD17G1053800.v1.1
prunus_persica Prupe.3G262800_v2.0.a1
pyrus_communis pycom111g04710 pycom17g05150
rosa_chinensis RchiOBHm_Chr2g0167041
rosa_laevigata RLG00000021691
rosa_multiflora Rmu_sc0010966.1_g000012
rosa_roxburghii Rroxscaffold_2G00083780
rosa_rugosa Rorug02G0527900 Rorug02G0527900
rosa_samantha Rh2AG594800 Rh2BG606100 Rh2CG576900 Rh2DG617600
rosa_wichuraiana Rw2G049510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 336
AccB1I GGYRCC 1 cut(s) 336
AclWI GGATC 3 cut(s) 89, 262, 275
AcuI CTGAAG 1 cut(s) 351
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 21, 338
AjnI CCWGG 2 cut(s) 37, 283
AluBI AGCT 4 cut(s) 34, 158, 237, 329
AluI AGCT 4 cut(s) 34, 158, 237, 329
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 3 cut(s) 89, 262, 275
ApeKI GCWGC 1 cut(s) 347
Asp718I GGTACC 1 cut(s) 336
AsuHPI GGTGA 2 cut(s) 89, 105
BamHI GGATCC 1 cut(s) 267
BanI GGYRCC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 359
BciT130I CCWGG 2 cut(s) 39, 285
BcoDI GTCTC 1 cut(s) 290
BfmI CTRYAG 1 cut(s) 147
BisI GCNGC 1 cut(s) 348
BlsI GCNGC 1 cut(s) 349
Bme1390I CCNGG 2 cut(s) 39, 285
BmiI GGNNCC 2 cut(s) 269, 338
BmrFI CCNGG 2 cut(s) 39, 285
BpuEI CTTGAG 1 cut(s) 225
BsaBI GATNNNNATC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 3 cut(s) 98, 137, 283
Bse8I GATNNNNATC 1 cut(s) 93
BseBI CCWGG 2 cut(s) 39, 285
BseDI CCNNGG 3 cut(s) 98, 137, 283
BseJI GATNNNNATC 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 1 cut(s) 359
BshNI GGYRCC 1 cut(s) 336
BsmAI GTCTC 1 cut(s) 290
Bso31I GGTCTC 1 cut(s) 290
Bsp143I GATC 2 cut(s) 94, 267
Bsp19I CCATGG 1 cut(s) 137
BspLI GGNNCC 2 cut(s) 269, 338
BspPI GGATC 3 cut(s) 89, 262, 275
BspT107I GGYRCC 1 cut(s) 336
BspTNI GGTCTC 1 cut(s) 290
BssECI CCNNGG 3 cut(s) 98, 137, 283
BssMI GATC 2 cut(s) 94, 267
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 137
Bst2UI CCWGG 2 cut(s) 39, 285
Bst4CI ACNGT 2 cut(s) 24, 341
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 185
BstDSI CCRYGG 1 cut(s) 137
BstKTI GATC 2 cut(s) 97, 270
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 2 cut(s) 94, 267
BstNI CCWGG 2 cut(s) 39, 285
BstSCI CCNGG 2 cut(s) 37, 283
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 359
BstX2I RGATCY 1 cut(s) 267
BstYI RGATCY 1 cut(s) 267
BtgI CCRYGG 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 185
Csp6I GTAC 2 cut(s) 20, 337
CviAII CATG 3 cut(s) 138, 223, 318
CviJI RGCY 6 cut(s) 34, 60, 158, 237, 329, 350
CviKI_1 RGCY 6 cut(s) 34, 60, 158, 237, 329, 350
CviQI GTAC 2 cut(s) 20, 337
DpnI GATC 2 cut(s) 96, 269
DpnII GATC 2 cut(s) 94, 267
Eco130I CCWWGG 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 351
EcoRII CCWGG 2 cut(s) 37, 283
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
FaeI CATG 3 cut(s) 141, 226, 321
FaiI YATR 7 cut(s) 27, 63, 139, 149, 224, 249, 319
FatI CATG 3 cut(s) 137, 222, 317
Fnu4HI GCNGC 1 cut(s) 348
Fsp4HI GCNGC 1 cut(s) 348
GluI GCNGC 1 cut(s) 348
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 141, 226, 321
HphI GGTGA 2 cut(s) 89, 105
Hpy166II GTNNAC 1 cut(s) 20
Hpy8I GTNNAC 1 cut(s) 20
HpyAV CCTTC 3 cut(s) 50, 221, 326
HpyCH4III ACNGT 2 cut(s) 24, 341
HpyCH4V TGCA 2 cut(s) 29, 347
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 141, 226, 321
KpnI GGTACC 1 cut(s) 340
Kzo9I GATC 2 cut(s) 94, 267
LmnI GCTCC 1 cut(s) 326
LpnPI CCDG 4 cut(s) 24, 51, 270, 297
Lsp1109I GCAGC 1 cut(s) 359
MaeIII GTNAC 2 cut(s) 218, 252
MalI GATC 2 cut(s) 96, 269
MboI GATC 2 cut(s) 94, 267
MboII GAAGA 3 cut(s) 59, 182, 202
MflI RGATCY 1 cut(s) 267
MluCI AATT 1 cut(s) 303
MnlI CCTC 2 cut(s) 108, 317
MspR9I CCNGG 2 cut(s) 39, 285
MvaI CCWGG 2 cut(s) 39, 285
NcoI CCATGG 1 cut(s) 137
NdeII GATC 2 cut(s) 94, 267
NlaIII CATG 3 cut(s) 141, 226, 321
NlaIV GGNNCC 2 cut(s) 269, 338
NmuCI GTSAC 1 cut(s) 218
PfoI TCCNGGA 1 cut(s) 37
PkrI GCNGC 1 cut(s) 349
Psp6I CCWGG 2 cut(s) 37, 283
PspGI CCWGG 2 cut(s) 37, 283
PspN4I GGNNCC 2 cut(s) 269, 338
PsuI RGATCY 1 cut(s) 267
RsaI GTAC 2 cut(s) 21, 338
RsaNI GTAC 2 cut(s) 20, 337
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 2 cut(s) 94, 267
ScrFI CCNGG 2 cut(s) 39, 285
SetI ASST 5 cut(s) 36, 160, 239, 247, 331
SfcI CTRYAG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
Sse9I AATT 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 37, 283
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 2 cut(s) 24, 341
TaqI TCGA 2 cut(s) 93, 105
TasI AATT 1 cut(s) 303
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 3 cut(s) 60, 69, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.