Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0012474

Physical Location & Seq

Genomic Coordinates Reverse (-)

2856403 .. 2857077

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGTCATCTAGGCGCAATGTTCGTTACAGCCCTCTTGCTACGGATGATGATGATGATGTTTATGGAAGACCCAATGACCCTCGGTTTGACTATACGCCAAAGTCATTTGATAAAATCCCATGGAAATCCATAGTTCTTGCTCTTTTCTTGCTTTCTCTTGGATCTTTGCTTCTGTTTCTTTCATACTTCATTTTCACCGGTCACATGGGAGGGGAGCTGACTCAAGCCTATGGCCTTTTGGCGCTCGGAATCCTCACCTTCCTCCCTGGCTTTTACGAGACACGAATTGCATATTATGCATGGAGAGGTGCAAAAGGATACCGTTTTGCCTCCATTCCGGACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF872

Protein Analysis

116

Amino Acids

13.15

Weight (kDa)

7.93

Isoelectric Point (pI)

26.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29170 AT3G29170
fragaria_vesca	FvH4_6g47840
malus_domestica	MD09G1056300.v1.1 MD17G1053800.v1.1
prunus_persica	Prupe.3G262800_v2.0.a1
pyrus_communis	pycom111g04710 pycom17g05150
rosa_chinensis	RchiOBHm_Chr2g0167041
rosa_laevigata	RLG00000021691
rosa_multiflora	Rmu_sc0010966.1_g000012
rosa_roxburghii	Rroxscaffold_2G00083780
rosa_rugosa	Rorug02G0527900 Rorug02G0527900
rosa_samantha	Rh2AG594800 Rh2BG606100 Rh2CG576900 Rh2DG617600
rosa_wichuraiana	Rw2G049510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	337
AclWI	GGATC	1 cut(s)	169
AgeI	ACCGGT	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	169
Aor13HI	TCCGGA	1 cut(s)	337
AoxI	GGCC	1 cut(s)	232
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AsiGI	ACCGGT	1 cut(s)	197
AspLEI	GCGC	2 cut(s)	15, 244
AsuHPI	GGTGA	2 cut(s)	187, 247
BbsI	GAAGAC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	267
BciVI	GTATCC	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	2 cut(s)	9, 346
BfoI	RGCGCY	1 cut(s)	245
BfuI	GTATCC	1 cut(s)	311
Bme1390I	CCNGG	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	207
BsaJI	CCNNGG	3 cut(s)	80, 119, 265
BsaWI	WCCGGW	2 cut(s)	197, 337
Bse118I	RCCGGY	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	22
BseAI	TCCGGA	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	3 cut(s)	80, 119, 265
BseGI	GGATG	1 cut(s)	49
BseMI	GCAATG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	234
BshTI	ACCGGT	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	198, 338
BsmAI	GTCTC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	234
Bsp13I	TCCGGA	1 cut(s)	337
Bsp143I	GATC	1 cut(s)	161
Bsp19I	CCATGG	1 cut(s)	119
BspANI	GGCC	1 cut(s)	234
BspEI	TCCGGA	1 cut(s)	337
BspPI	GGATC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	3 cut(s)	80, 119, 265
BssMI	GATC	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	323
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstDSI	CCRYGG	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	49
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	2 cut(s)	15, 244
BstKTI	GATC	1 cut(s)	164
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	265
BstV2I	GAAGAC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
BsuI	GTATCC	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	234
BtgI	CCRYGG	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	49
CfoI	GCGC	2 cut(s)	15, 244
Cfr10I	RCCGGY	1 cut(s)	197
CspAI	ACCGGT	1 cut(s)	197
CviAII	CATG	3 cut(s)	120, 205, 300
CviJI	RGCY	5 cut(s)	30, 217, 227, 234, 270
CviKI_1	RGCY	5 cut(s)	30, 217, 227, 234, 270
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	119
EcoT22I	ATGCAT	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	3 cut(s)	123, 208, 303
FatI	CATG	3 cut(s)	119, 204, 299
FokI	GGATG	1 cut(s)	56
FspBI	CTAG	2 cut(s)	9, 346
GlaI	GCGC	2 cut(s)	14, 243
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	2 cut(s)	198, 338
HhaI	GCGC	2 cut(s)	15, 244
Hin1II	CATG	3 cut(s)	123, 208, 303
Hin6I	GCGC	2 cut(s)	13, 242
HinP1I	GCGC	2 cut(s)	13, 242
HinfI	GANTC	2 cut(s)	220, 249
HpaII	CCGG	2 cut(s)	198, 338
HphI	GGTGA	2 cut(s)	187, 247
Hpy188I	TCNGA	1 cut(s)	248
Hpy188III	TCNNGA	1 cut(s)	338
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4V	TGCA	3 cut(s)	290, 299, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
Hsp92II	CATG	3 cut(s)	123, 208, 303
HspAI	GCGC	2 cut(s)	13, 242
Kpn2I	TCCGGA	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	161
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	3 cut(s)	211, 252, 279
MaeI	CTAG	2 cut(s)	9, 346
MaeIII	GTNAC	2 cut(s)	23, 200
MalI	GATC	1 cut(s)	163
MboI	GATC	1 cut(s)	161
MboII	GAAGA	1 cut(s)	78
MflI	RGATCY	1 cut(s)	161
MluCI	AATT	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	214
MnlI	CCTC	7 cut(s)	42, 90, 203, 263, 272, 299, 340
Mph1103I	ATGCAT	1 cut(s)	301
MroI	TCCGGA	1 cut(s)	337
MspI	CCGG	2 cut(s)	198, 338
MspR9I	CCNGG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	296
NcoI	CCATGG	1 cut(s)	119
NdeII	GATC	1 cut(s)	161
NlaIII	CATG	3 cut(s)	123, 208, 303
NmuCI	GTSAC	1 cut(s)	200
NsiI	ATGCAT	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	249
PinAI	ACCGGT	1 cut(s)	197
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	161
Sau3AI	GATC	1 cut(s)	161
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	267
SetI	ASST	3 cut(s)	219, 260, 310
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	1 cut(s)	285
SspMI	CTAG	2 cut(s)	9, 346
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	323
TasI	AATT	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	171, 178
TspGWI	ACGGA	1 cut(s)	56
XspI	CTAG	2 cut(s)	9, 346
Zsp2I	ATGCAT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.