FvH4_6g47840

Transmembrane protein 230-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012474
Physical Location & Seq
Forward (+)
36178947 .. 36181231
2285 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47840.t1

Sequence Viewer

Length: 348 bp
ATGGCATCTAGGCGCAACGTCCAGTACAGCCGTCTTGCTACTGATGAAGACGATGATTATAGTGGGACGGGCAATGACCGTCGGTTTGACTATACACCAAGGTCTTTCGATAAAGTTCCATGGAAATCCATATGCCTTGCTCTTTTCCTTCTTTCTCTTGGATCATTGCTTCTCTTTCTGTCCTATTTCATTTTCACTGGTCACATGGGAGGGGAGATGTCCCAAGCCTATGGCCTTCTAGCTCTAGGAATTCTCACCTTCCTCCCAGGCTTTTATGAGACTCGGATTGCTTATTATGCATGGAGAGGTGCACAGGGGTTCCGTTTTGCATCCATTCCTGACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF872

Protein Analysis

116

Amino Acids

13.14

Weight (kDa)

6.54

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM_230_134 PF05915 39 - 115 1.3e-23 Transmembrane proteins 230/134
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29170 AT3G29170
fragaria_vesca FvH4_6g47840
malus_domestica MD09G1056300.v1.1 MD17G1053800.v1.1
prunus_persica Prupe.3G262800_v2.0.a1
pyrus_communis pycom111g04710 pycom17g05150
rosa_chinensis RchiOBHm_Chr2g0167041
rosa_laevigata RLG00000021691
rosa_multiflora Rmu_sc0010966.1_g000012
rosa_roxburghii Rroxscaffold_2G00083780
rosa_rugosa Rorug02G0527900 Rorug02G0527900
rosa_samantha Rh2AG594800 Rh2BG606100 Rh2CG576900 Rh2DG617600
rosa_wichuraiana Rw2G049510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 169
AcsI RAATTY 1 cut(s) 249
AfaI GTAC 1 cut(s) 26
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 272
Alw44I GTGCAC 1 cut(s) 309
AlwI GGATC 1 cut(s) 169
AoxI GGCC 1 cut(s) 232
ApaLI GTGCAC 1 cut(s) 309
ApoI RAATTY 1 cut(s) 249
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AspLEI GCGC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 247
BaeGI GKGCMC 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 313
BceAI ACGGC 1 cut(s) 15
BciT130I CCWGG 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 4 cut(s) 9, 239, 245, 346
Bme1390I CCNGG 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 320
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 14, 338
BpiI GAAGAC 1 cut(s) 54
BsaJI CCNNGG 3 cut(s) 98, 119, 265
Bse1I ACTGG 2 cut(s) 22, 202
Bse3DI GCAATG 2 cut(s) 79, 164
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 3 cut(s) 98, 119, 265
BseGI GGATG 1 cut(s) 329
BseMI GCAATG 2 cut(s) 79, 164
BseNI ACTGG 2 cut(s) 22, 202
BseSI GKGCMC 1 cut(s) 313
BshFI GGCC 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 313
BslFI GGGAC 2 cut(s) 79, 205
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 2 cut(s) 79, 205
BsnI GGCC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 1 cut(s) 161
Bsp19I CCATGG 1 cut(s) 119
BspANI GGCC 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 320
BspPI GGATC 1 cut(s) 169
BsrDI GCAATG 2 cut(s) 79, 164
BsrI ACTGG 2 cut(s) 22, 202
BssECI CCNNGG 3 cut(s) 98, 119, 265
BssMI GATC 1 cut(s) 161
BssT1I CCWWGG 2 cut(s) 98, 119
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 80
BstDSI CCRYGG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 329
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 1 cut(s) 164
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 1 cut(s) 161
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BstSLI GKGCMC 1 cut(s) 313
BstV2I GAAGAC 1 cut(s) 54
BstXI CCANNNNNNTGG 1 cut(s) 230
BsuRI GGCC 1 cut(s) 234
BtgI CCRYGG 1 cut(s) 119
BtsCI GGATG 1 cut(s) 329
BtsIMutI CAGTG 1 cut(s) 195
CfoI GCGC 1 cut(s) 15
Csp6I GTAC 1 cut(s) 25
CviAII CATG 3 cut(s) 120, 205, 300
CviJI RGCY 5 cut(s) 30, 227, 234, 242, 270
CviKI_1 RGCY 5 cut(s) 30, 227, 234, 242, 270
CviQI GTAC 1 cut(s) 25
DpnI GATC 1 cut(s) 163
DpnII GATC 1 cut(s) 161
Eco130I CCWWGG 2 cut(s) 98, 119
EcoRI GAATTC 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 265
EcoT14I CCWWGG 2 cut(s) 98, 119
EcoT22I ATGCAT 1 cut(s) 301
ErhI CCWWGG 2 cut(s) 98, 119
FaeI CATG 3 cut(s) 123, 208, 303
FaqI GGGAC 2 cut(s) 79, 205
FatI CATG 3 cut(s) 119, 204, 299
FauNDI CATATG 1 cut(s) 131
FokI GGATG 1 cut(s) 316
FspBI CTAG 4 cut(s) 9, 239, 245, 346
GlaI GCGC 1 cut(s) 14
HaeIII GGCC 1 cut(s) 234
HhaI GCGC 1 cut(s) 15
Hin1II CATG 3 cut(s) 123, 208, 303
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HinfI GANTC 1 cut(s) 280
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 1 cut(s) 285
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 1 cut(s) 311
Hpy99I CGWCG 1 cut(s) 84
HpyAV CCTTC 3 cut(s) 158, 245, 268
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 3 cut(s) 299, 311, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 3 cut(s) 123, 208, 303
HspAI GCGC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 161
LpnPI CCDG 5 cut(s) 35, 183, 252, 279, 299
LweI GCATC 2 cut(s) 14, 338
MaeI CTAG 4 cut(s) 9, 239, 245, 346
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 200
MalI GATC 1 cut(s) 163
MboI GATC 1 cut(s) 161
MboII GAAGA 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 1 cut(s) 249
MlyI GAGTC 1 cut(s) 274
MnlI CCTC 3 cut(s) 203, 272, 299
Mph1103I ATGCAT 1 cut(s) 301
MspR9I CCNGG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 296
NcoI CCATGG 1 cut(s) 119
NdeI CATATG 1 cut(s) 131
NdeII GATC 1 cut(s) 161
NlaIII CATG 3 cut(s) 123, 208, 303
NlaIV GGNNCC 1 cut(s) 320
NmuCI GTSAC 1 cut(s) 200
NsiI ATGCAT 1 cut(s) 301
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 320
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
Sau3AI GATC 1 cut(s) 161
SchI GAGTC 1 cut(s) 274
ScrFI CCNGG 1 cut(s) 267
SduI GDGCHC 1 cut(s) 313
SetI ASST 5 cut(s) 21, 104, 244, 260, 310
SfaNI GCATC 2 cut(s) 14, 338
Sse9I AATT 1 cut(s) 249
SspMI CTAG 4 cut(s) 9, 239, 245, 346
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 2 cut(s) 98, 119
TaaI ACNGT 1 cut(s) 80
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 108
TasI AATT 1 cut(s) 249
TatI WGTACW 1 cut(s) 24
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 2 cut(s) 60, 178
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 1 cut(s) 202
VneI GTGCAC 1 cut(s) 309
XapI RAATTY 1 cut(s) 249
XspI CTAG 4 cut(s) 9, 239, 245, 346
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.