Rroxscaffold_2G00083780

Transmembrane protein 230-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012474
Physical Location & Seq
Reverse (-)
6395053 .. 6397289
2237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00083780.1

Sequence Viewer

Length: 348 bp
ATGGCATCTAGGCGCAATGTCCAGTATAGCCGTCTTGCTACTGATGAAGATGATGATTATAATGGGAGAGGCGATGACCGTCGTTTTGACTATACACCAAAGTCCTTTGATAAAGTTCCATGGAAATCCATAGGCCTTGCTCTTTTCCTGCTTTCTCTTGGATCAATCCTTCTCTTCCTTTCCTATTTCATTTTCACTGGTCACATGGGAGGGGATATGTCCCAAGCCTATGGCCTTCTAGCTCTAGGAATTCTCACCTTCCTCCCAGGCTTTTATGAGACACGGATTGCTTATTATGCATGGAGAGGTGCAAAGGGGTTCCGTTTTGCATCCATTCCGGACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF872

Protein Analysis

115

Amino Acids

13.14

Weight (kDa)

7.95

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM_230_134 PF05915 39 - 115 4e-23 Transmembrane proteins 230/134
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29170 AT3G29170
fragaria_vesca FvH4_6g47840
malus_domestica MD09G1056300.v1.1 MD17G1053800.v1.1
prunus_persica Prupe.3G262800_v2.0.a1
pyrus_communis pycom111g04710 pycom17g05150
rosa_chinensis RchiOBHm_Chr2g0167041
rosa_laevigata RLG00000021691
rosa_multiflora Rmu_sc0010966.1_g000012
rosa_roxburghii Rroxscaffold_2G00083780
rosa_rugosa Rorug02G0527900 Rorug02G0527900
rosa_samantha Rh2AG594800 Rh2BG606100 Rh2CG576900 Rh2DG617600
rosa_wichuraiana Rw2G049510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 60
AccIII TCCGGA 1 cut(s) 337
AclWI GGATC 1 cut(s) 169
AcsI RAATTY 1 cut(s) 249
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 1 cut(s) 169
Aor13HI TCCGGA 1 cut(s) 337
AoxI GGCC 2 cut(s) 133, 232
ApoI RAATTY 1 cut(s) 249
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AspLEI GCGC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 247
BceAI ACGGC 1 cut(s) 15
BciT130I CCWGG 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 4 cut(s) 9, 239, 245, 346
Bme1390I CCNGG 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 320
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 14, 338
BsaJI CCNNGG 2 cut(s) 119, 265
BsaWI WCCGGW 1 cut(s) 337
Bse1I ACTGG 2 cut(s) 22, 202
Bse3DI GCAATG 1 cut(s) 22
BseAI TCCGGA 1 cut(s) 337
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 119, 265
BseGI GGATG 1 cut(s) 329
BseMI GCAATG 1 cut(s) 22
BseNI ACTGG 2 cut(s) 22, 202
BshFI GGCC 2 cut(s) 135, 234
BsiSI CCGG 1 cut(s) 338
BslFI GGGAC 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 2 cut(s) 135, 234
Bsp13I TCCGGA 1 cut(s) 337
Bsp143I GATC 1 cut(s) 161
Bsp19I CCATGG 1 cut(s) 119
BspANI GGCC 2 cut(s) 135, 234
BspEI TCCGGA 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 320
BspPI GGATC 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 22
BsrI ACTGG 2 cut(s) 22, 202
BssECI CCNNGG 2 cut(s) 119, 265
BssMI GATC 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 80
Bst6I CTCTTC 1 cut(s) 179
BstDSI CCRYGG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 329
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 1 cut(s) 164
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 1 cut(s) 161
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BstXI CCANNNNNNTGG 1 cut(s) 230
BsuRI GGCC 2 cut(s) 135, 234
BtgI CCRYGG 1 cut(s) 119
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 329
BtsIMutI CAGTG 1 cut(s) 195
CfoI GCGC 1 cut(s) 15
CviAII CATG 3 cut(s) 120, 205, 300
CviJI RGCY 6 cut(s) 30, 135, 227, 234, 242, 270
CviKI_1 RGCY 6 cut(s) 30, 135, 227, 234, 242, 270
DpnI GATC 1 cut(s) 163
DpnII GATC 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 119
Eco147I AGGCCT 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 119
EcoT22I ATGCAT 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 3 cut(s) 123, 208, 303
FaqI GGGAC 1 cut(s) 205
FatI CATG 3 cut(s) 119, 204, 299
FokI GGATG 1 cut(s) 316
FspBI CTAG 4 cut(s) 9, 239, 245, 346
GlaI GCGC 1 cut(s) 14
HaeIII GGCC 2 cut(s) 135, 234
HapII CCGG 1 cut(s) 338
HhaI GCGC 1 cut(s) 15
Hin1II CATG 3 cut(s) 123, 208, 303
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HpaII CCGG 1 cut(s) 338
HphI GGTGA 1 cut(s) 247
Hpy188III TCNNGA 1 cut(s) 338
Hpy99I CGWCG 1 cut(s) 84
HpyAV CCTTC 3 cut(s) 179, 245, 268
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 3 cut(s) 299, 311, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
Hsp92II CATG 3 cut(s) 123, 208, 303
HspAI GCGC 1 cut(s) 13
Kpn2I TCCGGA 1 cut(s) 337
Kzo9I GATC 1 cut(s) 161
LpnPI CCDG 5 cut(s) 35, 161, 183, 252, 279
LweI GCATC 2 cut(s) 14, 338
MaeI CTAG 4 cut(s) 9, 239, 245, 346
MaeIII GTNAC 1 cut(s) 200
MalI GATC 1 cut(s) 163
MboI GATC 1 cut(s) 161
MboII GAAGA 2 cut(s) 59, 166
MluCI AATT 1 cut(s) 249
MnlI CCTC 4 cut(s) 62, 203, 272, 299
Mph1103I ATGCAT 1 cut(s) 301
MroI TCCGGA 1 cut(s) 337
MspI CCGG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 296
NcoI CCATGG 1 cut(s) 119
NdeII GATC 1 cut(s) 161
NlaIII CATG 3 cut(s) 123, 208, 303
NlaIV GGNNCC 1 cut(s) 320
NmuCI GTSAC 1 cut(s) 200
NsiI ATGCAT 1 cut(s) 301
PceI AGGCCT 1 cut(s) 135
PsiI TTATAA 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 320
Sau3AI GATC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 267
SetI ASST 3 cut(s) 244, 260, 310
SfaNI GCATC 2 cut(s) 14, 338
Sse9I AATT 1 cut(s) 249
SseBI AGGCCT 1 cut(s) 135
SspMI CTAG 4 cut(s) 9, 239, 245, 346
StuI AGGCCT 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 1 cut(s) 80
TasI AATT 1 cut(s) 249
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 2 cut(s) 60, 178
TspGWI ACGGA 2 cut(s) 298, 311
TspRI CASTG 1 cut(s) 202
XapI RAATTY 1 cut(s) 249
XspI CTAG 4 cut(s) 9, 239, 245, 346
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.