MD17G1053800.v1.1

Transmembrane protein 230-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012474
Physical Location & Seq
Reverse (-)
4177034 .. 4179140
2107 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1053800.v1.1.491

Sequence Viewer

Length: 345 bp
ATGGCATCTAGGCGCAATGTTCGTTACAGTCCTCTTGCTACGGATGATGATGATGTTTATGGAAGCCCCAATGACCCTCGGTTTGACTATACGCCTAAGTCTTTTGATAAAATCCCGTGGAAATCCATTGTTCTTGCTCTTTTCCTGCTTTCTCTTGGATCATTGCTTCTGTTTCTTTCATACTTCATTTTCACCGGTCACATGGGAGGGGAGCTGGCTCAAGCCTATGGCCTTTTGGCTCTTGGGGCTCTCACCTTCCTCCCAGGCTTTTATGAGACACGAATTGCATATTATGCATGGAGAGGTGCAAAAGGATACCGTTTTGCCTCCATTCCGGACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF872

Protein Analysis

115

Amino Acids

12.88

Weight (kDa)

7.93

Isoelectric Point (pI)

23.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM_230_134 PF05915 39 - 114 5.9e-23 Transmembrane proteins 230/134
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012474)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29170 AT3G29170
fragaria_vesca FvH4_6g47840
malus_domestica MD09G1056300.v1.1 MD17G1053800.v1.1
prunus_persica Prupe.3G262800_v2.0.a1
pyrus_communis pycom111g04710 pycom17g05150
rosa_chinensis RchiOBHm_Chr2g0167041
rosa_laevigata RLG00000021691
rosa_multiflora Rmu_sc0010966.1_g000012
rosa_roxburghii Rroxscaffold_2G00083780
rosa_rugosa Rorug02G0527900 Rorug02G0527900
rosa_samantha Rh2AG594800 Rh2BG606100 Rh2CG576900 Rh2DG617600
rosa_wichuraiana Rw2G049510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 334
AclWI GGATC 1 cut(s) 166
AgeI ACCGGT 1 cut(s) 194
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 269
AlwI GGATC 1 cut(s) 166
Aor13HI TCCGGA 1 cut(s) 334
AoxI GGCC 1 cut(s) 229
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AsiGI ACCGGT 1 cut(s) 194
AspLEI GCGC 1 cut(s) 15
AsuHPI GGTGA 2 cut(s) 184, 244
BanII GRGCYC 1 cut(s) 250
BciT130I CCWGG 1 cut(s) 264
BciVI GTATCC 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 2 cut(s) 9, 343
BfuI GTATCC 1 cut(s) 308
Bme1390I CCNGG 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 204
BsaJI CCNNGG 3 cut(s) 77, 116, 262
BsaWI WCCGGW 2 cut(s) 194, 334
Bse118I RCCGGY 1 cut(s) 194
Bse3DI GCAATG 2 cut(s) 22, 161
BseAI TCCGGA 1 cut(s) 334
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 3 cut(s) 77, 116, 262
BseGI GGATG 1 cut(s) 49
BseMI GCAATG 2 cut(s) 22, 161
BshFI GGCC 1 cut(s) 231
BshTI ACCGGT 1 cut(s) 194
BsiSI CCGG 2 cut(s) 195, 335
BsmAI GTCTC 1 cut(s) 269
BsnI GGCC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 250
Bsp13I TCCGGA 1 cut(s) 334
Bsp143I GATC 1 cut(s) 158
BspANI GGCC 1 cut(s) 231
BspEI TCCGGA 1 cut(s) 334
BspPI GGATC 1 cut(s) 166
BsrDI GCAATG 2 cut(s) 22, 161
BsrFI RCCGGY 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 3 cut(s) 77, 116, 262
BssMI GATC 1 cut(s) 158
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 29, 320
BstAPI GCANNNNNTGC 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 96
BstDSI CCRYGG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 49
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 1 cut(s) 161
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 1 cut(s) 158
BstMWI GCNNNNNNNGC 2 cut(s) 245, 293
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 262
BsuI GTATCC 1 cut(s) 308
BsuRI GGCC 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 216
CfoI GCGC 1 cut(s) 15
Cfr10I RCCGGY 1 cut(s) 194
CspAI ACCGGT 1 cut(s) 194
CviAII CATG 2 cut(s) 202, 297
CviJI RGCY 8 cut(s) 66, 214, 218, 224, 231, 239, 248, 267
CviKI_1 RGCY 8 cut(s) 66, 214, 218, 224, 231, 239, 248, 267
DdeI CTNAG 1 cut(s) 96
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 250
FaeI CATG 2 cut(s) 205, 300
FaiI YATR 9 cut(s) 60, 90, 181, 203, 228, 273, 289, 294, 298
FatI CATG 2 cut(s) 201, 296
FokI GGATG 1 cut(s) 56
FriOI GRGCYC 1 cut(s) 250
FspBI CTAG 2 cut(s) 9, 343
GlaI GCGC 1 cut(s) 14
HaeIII GGCC 1 cut(s) 231
HapII CCGG 2 cut(s) 195, 335
HhaI GCGC 1 cut(s) 15
Hin1II CATG 2 cut(s) 205, 300
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HpaII CCGG 2 cut(s) 195, 335
HphI GGTGA 2 cut(s) 184, 244
Hpy188III TCNNGA 1 cut(s) 335
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 2 cut(s) 29, 320
HpyCH4V TGCA 3 cut(s) 287, 296, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 293
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 2 cut(s) 205, 300
HspAI GCGC 1 cut(s) 13
Kpn2I TCCGGA 1 cut(s) 334
Kzo9I GATC 1 cut(s) 158
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 5 cut(s) 158, 200, 208, 249, 276
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 9, 343
MaeIII GTNAC 2 cut(s) 23, 197
MalI GATC 1 cut(s) 160
MboI GATC 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 1 cut(s) 282
MnlI CCTC 6 cut(s) 42, 87, 200, 269, 296, 337
Mph1103I ATGCAT 1 cut(s) 298
MroI TCCGGA 1 cut(s) 334
MspI CCGG 2 cut(s) 195, 335
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 245, 293
NdeII GATC 1 cut(s) 158
NlaIII CATG 2 cut(s) 205, 300
NmuCI GTSAC 1 cut(s) 197
NsiI ATGCAT 1 cut(s) 298
PinAI ACCGGT 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
Sau3AI GATC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 250
SetI ASST 3 cut(s) 216, 257, 307
SfaNI GCATC 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
Sse9I AATT 1 cut(s) 282
SspMI CTAG 2 cut(s) 9, 343
StyD4I CCNGG 1 cut(s) 262
TaaI ACNGT 2 cut(s) 29, 320
TasI AATT 1 cut(s) 282
TseFI GTSAC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 2 cut(s) 168, 175
TspGWI ACGGA 1 cut(s) 56
XspI CTAG 2 cut(s) 9, 343
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.