Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006992

Physical Location & Seq

Genomic Coordinates Reverse (-)

15663000 .. 15666469

Gene Structure 3470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G43810.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCGGATCAGCTAACCGATGACCAGATCTCCGAGTTCAAGGAAGCTTTTAGCCTATTCGACAAAGACGGAGATGGTTGTATCACCACAAAGGAGCTTGGGACTGTGATGAGATCACTTGGGCAGAACCCGACAGAAGCCGAGCTCCAGGACATGATCAACGAAGTGGATGCAGACGGGAACGGGACAATAGATTTCCCAGAGTTCCTGAACCTAATGGCACGTAAGATGAAAGACACTGATTCAGAGGAAGAGCTTAAGGAAGCCTTCAGGGTTTTTGACAAGGACCAGAACGGTTTCATCTCGGCGGCTGAGCTTCGTCACGTGATGACAAATCTTGGGGAGAAGTTGACGGATGAGGAAGTCGATGAGATGATCCGAGAGGCTGACGTCGATGGTGATGGTCAGATCAACTATGAAGAGTTCGTCAAAGTCATGATGGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005513 GO:0008150 GO:0009593 GO:0010035 GO:0010038 GO:0010099 GO:0042221 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051592 GO:0051606 GO:0065007 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

149

Amino Acids

16.85

Weight (kDa)

4.11

Isoelectric Point (pI)

24.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_8	PF13833	2 - 39	4.6e-08	EF-hand domain pair
EF-hand_7	PF13499	3 - 37	1.4e-07	EF-hand domain pair
EF-hand_1	PF00036	12 - 39	2e-08	EF hand domain
EF-hand_FSTL1	PF23564	41 - 112	9e-06	Follistatin-related protein 1, EF-hand domain pair
EF-hand_7	PF13499	47 - 111	2.9e-22	EF-hand domain pair
AIF-1	PF21008	48 - 113	1.3e-06	Allograft inflammatory factor 1
EF-hand_1	PF00036	49 - 76	1.6e-09	EF hand domain
EF-hand_6	PF13405	49 - 78	1.2e-09	EF-hand domain
EF-hand_5	PF13202	50 - 74	8.5e-07	EF hand
EF-hand_9	PF14658	52 - 112	1.7e-07	EF-hand domain
EF-hand_8	PF13833	62 - 110	5.7e-13	EF-hand domain pair
EF-hand_1	PF00036	85 - 112	2.3e-10	EF hand domain
EF-hand_5	PF13202	88 - 110	7e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43810
fragaria_vesca	FvH4_1g30270
prunus_persica	Prupe.4G269100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0491111 RchiOBHm_Chr3g0495081 RchiOBHm_Chr3g0495111
rosa_multiflora	Rmu_sc0000340.1_g000030 Rmu_sc0005038.1_g000030 Rmu_ssc0000058.1_g000018
rosa_roxburghii	Rroxscaffold_6G00393160
rosa_rugosa	Rorug03G0246300 Rorug03G0269900 Rorug03G0270800
rosa_samantha	Rh3AG296500 Rh3AG318900 Rh3AG319100 Rh3CG329800 Rh3CG350900 Rh3DG330300 Rh3DG353100 Rh3DG353400
rosa_wichuraiana	Rw3G026170 Rw3G027800 Rw3G027850 Rw3G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	393
AciI	CCGC	2 cut(s)	5, 308
AclWI	GGATC	2 cut(s)	15, 370
AcuI	CTGAAG	1 cut(s)	253
AcvI	CACGTG	1 cut(s)	325
AcyI	GRCGYC	1 cut(s)	390
AflII	CTTAAG	1 cut(s)	257
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	6 cut(s)	13, 47, 97, 145, 256, 316
AluI	AGCT	6 cut(s)	13, 47, 97, 145, 256, 316
Alw21I	GWGCWC	1 cut(s)	147
AlwI	GGATC	2 cut(s)	15, 370
Asp700I	GAANNNNTTC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	2 cut(s)	76, 410
AvaII	GGWCC	1 cut(s)	286
BanII	GRGCYC	1 cut(s)	147
BbrPI	CACGTG	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	147
BccI	CCATC	4 cut(s)	68, 389, 395, 433
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciT130I	CCWGG	1 cut(s)	149
BclI	TGATCA	1 cut(s)	156
BfrI	CTTAAG	1 cut(s)	257
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	1 cut(s)	309
BlpI	GCTNAGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	160
BpmI	CTGGAG	1 cut(s)	131
Bpu1102I	GCTNAGC	1 cut(s)	312
BsaAI	YACGTR	2 cut(s)	224, 325
BsaHI	GRCGYC	1 cut(s)	390
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
BseBI	CCWGG	1 cut(s)	149
BseGI	GGATG	2 cut(s)	175, 361
BseMII	CTCAG	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	147
BslFI	GGGAC	2 cut(s)	115, 199
BsmFI	GGGAC	2 cut(s)	115, 199
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	6 cut(s)	7, 27, 113, 156, 375, 408
Bsp1720I	GCTNAGC	1 cut(s)	312
BspACI	CCGC	2 cut(s)	5, 308
BspCNI	CTCAG	1 cut(s)	304
BspHI	TCATGA	1 cut(s)	435
BspPI	GGATC	2 cut(s)	15, 370
BspQI	GCTCTTC	1 cut(s)	246
BspTI	CTTAAG	1 cut(s)	257
BssMI	GATC	6 cut(s)	7, 27, 113, 156, 375, 408
BssNI	GRCGYC	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	106, 296
Bst6I	CTCTTC	2 cut(s)	246, 414
BstACI	GRCGYC	1 cut(s)	390
BstAFI	CTTAAG	1 cut(s)	257
BstBAI	YACGTR	2 cut(s)	224, 325
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	2 cut(s)	175, 361
BstKTI	GATC	6 cut(s)	10, 30, 116, 159, 378, 411
BstMBI	GATC	6 cut(s)	7, 27, 113, 156, 375, 408
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BtsCI	GGATG	2 cut(s)	175, 361
BtsIMutI	CAGTG	1 cut(s)	237
CciI	TCATGA	1 cut(s)	435
Cfr13I	GGNCC	1 cut(s)	286
CviAII	CATG	2 cut(s)	154, 436
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	6 cut(s)	9, 29, 115, 158, 377, 410
DpnII	GATC	6 cut(s)	7, 27, 113, 156, 375, 408
Eam1104I	CTCTTC	2 cut(s)	246, 414
EarI	CTCTTC	2 cut(s)	246, 414
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	145
Eco24I	GRGCYC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	253
Eco72I	CACGTG	1 cut(s)	325
EcoICRI	GAGCTC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	147
FaeI	CATG	2 cut(s)	157, 439
FaiI	YATR	3 cut(s)	155, 417, 437
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	2 cut(s)	115, 199
FatI	CATG	2 cut(s)	153, 435
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	2 cut(s)	182, 368
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	2 cut(s)	157, 439
HincII	GTYRAC	1 cut(s)	351
HindII	GTYRAC	1 cut(s)	351
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	1 cut(s)	242
HphI	GGTGA	2 cut(s)	76, 410
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	4 cut(s)	34, 247, 380, 408
Hpy188III	TCNNGA	2 cut(s)	208, 436
Hpy8I	GTNNAC	1 cut(s)	351
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	106, 296
HpyCH4IV	ACGT	3 cut(s)	223, 324, 390
HpyCH4V	TGCA	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	3 cut(s)	223, 324, 390
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	2 cut(s)	157, 439
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	6 cut(s)	7, 27, 113, 156, 375, 408
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	94, 150
LpnPI	CCDG	7 cut(s)	38, 134, 161, 213, 221, 256, 302
LweI	GCATC	1 cut(s)	160
MaeII	ACGT	3 cut(s)	223, 324, 390
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	6 cut(s)	9, 29, 115, 158, 377, 410
MboI	GATC	6 cut(s)	7, 27, 113, 156, 375, 408
MboII	GAAGA	2 cut(s)	263, 431
MflI	RGATCY	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	147
MnlI	CCTC	3 cut(s)	241, 352, 376
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	1 cut(s)	258
MspCI	CTTAAG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
NdeII	GATC	6 cut(s)	7, 27, 113, 156, 375, 408
NlaIII	CATG	2 cut(s)	157, 439
NmeAIII	GCCGAG	2 cut(s)	166, 284
NmuCI	GTSAC	1 cut(s)	320
PagI	TCATGA	1 cut(s)	435
PciSI	GCTCTTC	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	242
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	310
PmaCI	CACGTG	1 cut(s)	325
PmlI	CACGTG	1 cut(s)	325
Ppu21I	YACGTR	2 cut(s)	224, 325
Psp124BI	GAGCTC	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	147
PspCI	CACGTG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	27
SacI	GAGCTC	1 cut(s)	147
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	6 cut(s)	7, 27, 113, 156, 375, 408
Sau96I	GGNCC	1 cut(s)	286
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	147
SfaNI	GCATC	1 cut(s)	160
SinI	GGWCC	1 cut(s)	286
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SsiI	CCGC	2 cut(s)	5, 308
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	106, 296
TaiI	ACGT	3 cut(s)	226, 327, 393
TaqI	TCGA	3 cut(s)	60, 366, 393
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	3 cut(s)	245, 289, 432
TspGWI	ACGGA	2 cut(s)	84, 368
TspRI	CASTG	1 cut(s)	244
Vha464I	CTTAAG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	286
XmnI	GAANNNNTTC	1 cut(s)	296
ZraI	GACGTC	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.