Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005038.1

Orthogroup ID

OG0006992

Physical Location & Seq

Genomic Coordinates Forward (+)

132920 .. 134651

Gene Structure 1732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005038.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggccgatcagctcaccgacgaccagatctctgagttcaaggaggctttcagccttttcgacaaggacggcgatggctgcatcactaccaaggagcttggcactgtcatgcggtcacttgggcagaacccaactgaagcagagcttcaggatatgattaatgaggttgatgctgatgggaatggtaccattgatttcccagagttccttaacctgatggctcgaaagatgaaggacactgattctgaggaggagctcaaggaagcgttccgggtgttcgataaggaccagaatggcttcatttctgctgctgagcttcgtcatgttatgacaaatctgggtgagaagctgacagatgaggaggttgatgagatgattcgcgaggctgatgtggatggtgatggacagatcaactatgaggagttcgtcaaagtcatgatggccaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005513 GO:0008150 GO:0009593 GO:0010035 GO:0010038 GO:0010099 GO:0042221 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051592 GO:0051606 GO:0065007 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

149

Amino Acids

16.85

Weight (kDa)

4.11

Isoelectric Point (pI)

24.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43810
fragaria_vesca	FvH4_1g30270
prunus_persica	Prupe.4G269100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0491111 RchiOBHm_Chr3g0495081 RchiOBHm_Chr3g0495111
rosa_multiflora	Rmu_sc0000340.1_g000030 Rmu_sc0005038.1_g000030 Rmu_ssc0000058.1_g000018
rosa_roxburghii	Rroxscaffold_6G00393160
rosa_rugosa	Rorug03G0246300 Rorug03G0269900 Rorug03G0270800
rosa_samantha	Rh3AG296500 Rh3AG318900 Rh3AG319100 Rh3CG329800 Rh3CG350900 Rh3DG330300 Rh3DG353100 Rh3DG353400
rosa_wichuraiana	Rw3G026170 Rw3G027800 Rw3G027850 Rw3G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	185
AccB1I	GGYRCC	1 cut(s)	185
AccII	CGCG	1 cut(s)	381
AciI	CCGC	1 cut(s)	112
AcoI	YGGCCR	2 cut(s)	3, 441
AcuI	CTGAAG	2 cut(s)	131, 156
AfaI	GTAC	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	40
AluBI	AGCT	6 cut(s)	13, 97, 145, 256, 316, 349
AluI	AGCT	6 cut(s)	13, 97, 145, 256, 316, 349
Alw21I	GWGCWC	1 cut(s)	258
AoxI	GGCC	2 cut(s)	3, 441
ApeKI	GCWGC	2 cut(s)	78, 308
AseI	ATTAAT	1 cut(s)	159
Asp700I	GAANNNNTTC	1 cut(s)	296
Asp718I	GGTACC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	286
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	3 cut(s)	7, 353, 410
AvaII	GGWCC	1 cut(s)	286
BalI	TGGCCA	1 cut(s)	443
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	65, 295
BccI	CCATC	6 cut(s)	68, 170, 211, 389, 395, 433
BceAI	ACGGC	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	272
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	2 cut(s)	79, 309
BlpI	GCTNAGC	1 cut(s)	312
BlsI	GCNGC	2 cut(s)	80, 310
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	2 cut(s)	90, 160
Bpu1102I	GCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	400
BseMII	CTCAG	3 cut(s)	24, 237, 303
BseRI	GAGGAG	4 cut(s)	263, 266, 374, 434
BseXI	GCAGC	2 cut(s)	65, 295
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	2 cut(s)	5, 443
BshNI	GGYRCC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	271
BsnI	GGCC	2 cut(s)	5, 443
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	7, 27, 408
Bsp1720I	GCTNAGC	1 cut(s)	312
Bsp68I	TCGCGA	1 cut(s)	381
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	2 cut(s)	5, 443
BspCNI	CTCAG	3 cut(s)	25, 238, 304
BspFNI	CGCG	1 cut(s)	381
BspHI	TCATGA	1 cut(s)	435
BspLI	GGNNCC	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	3 cut(s)	7, 27, 408
BssT1I	CCWWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	106
BstDEI	CTNAG	3 cut(s)	33, 246, 312
BstF5I	GGATG	1 cut(s)	400
BstFNI	CGCG	1 cut(s)	381
BstKTI	GATC	3 cut(s)	10, 30, 411
BstMBI	GATC	3 cut(s)	7, 27, 408
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	270
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	65, 295
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	5, 443
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	2 cut(s)	102, 237
BtuMI	TCGCGA	1 cut(s)	381
CciI	TCATGA	1 cut(s)	435
Cfr13I	GGNCC	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	3 cut(s)	109, 323, 436
CviQI	GTAC	1 cut(s)	186
DdeI	CTNAG	3 cut(s)	33, 246, 312
DpnI	GATC	3 cut(s)	9, 29, 410
DpnII	GATC	3 cut(s)	7, 27, 408
EaeI	YGGCCR	2 cut(s)	3, 441
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	2 cut(s)	131, 156
EcoICRI	GAGCTC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	3 cut(s)	112, 326, 439
FaiI	YATR	6 cut(s)	110, 155, 324, 329, 417, 437
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	3 cut(s)	108, 322, 435
Fnu4HI	GCNGC	2 cut(s)	79, 309
FokI	GGATG	1 cut(s)	407
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	2 cut(s)	79, 309
GluI	GCNGC	2 cut(s)	79, 309
HaeIII	GGCC	2 cut(s)	5, 443
HapII	CCGG	1 cut(s)	271
Hin1II	CATG	3 cut(s)	112, 326, 439
HinfI	GANTC	2 cut(s)	242, 376
HpaII	CCGG	1 cut(s)	271
HphI	GGTGA	3 cut(s)	7, 353, 410
Hpy188I	TCNGA	2 cut(s)	34, 247
Hpy188III	TCNNGA	3 cut(s)	149, 380, 436
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	3 cut(s)	33, 246, 312
Hsp92II	CATG	3 cut(s)	112, 326, 439
KpnI	GGTACC	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	7, 27, 408
LmnI	GCTCC	2 cut(s)	94, 253
LpnPI	CCDG	7 cut(s)	38, 134, 213, 227, 284, 302, 323
Lsp1109I	GCAGC	2 cut(s)	65, 295
LweI	GCATC	2 cut(s)	90, 160
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	3 cut(s)	9, 29, 410
MboI	GATC	3 cut(s)	7, 27, 408
MflI	RGATCY	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	258
MlsI	TGGCCA	1 cut(s)	443
MluNI	TGGCCA	1 cut(s)	443
MnlI	CCTC	8 cut(s)	37, 157, 241, 244, 352, 355, 376, 412
Mox20I	TGGCCA	1 cut(s)	443
MroXI	GAANNNNTTC	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	2 cut(s)	159, 210
MslI	CAYNNNNRTG	1 cut(s)	107
Msp20I	TGGCCA	1 cut(s)	443
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	272
NdeII	GATC	3 cut(s)	7, 27, 408
NlaIII	CATG	3 cut(s)	112, 326, 439
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	114
NruI	TCGCGA	1 cut(s)	381
PagI	TCATGA	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	242, 376
PkrI	GCNGC	2 cut(s)	80, 310
PshBI	ATTAAT	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	27
RruI	TCGCGA	1 cut(s)	381
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
RseI	CAYNNNNRTG	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	159, 210
SatI	GCNGC	2 cut(s)	79, 309
Sau3AI	GATC	3 cut(s)	7, 27, 408
Sau96I	GGNCC	1 cut(s)	286
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	9 cut(s)	15, 99, 147, 168, 216, 258, 318, 351, 366
SfaNI	GCATC	2 cut(s)	90, 160
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SsiI	CCGC	1 cut(s)	112
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	3 cut(s)	60, 223, 279
TfiI	GAWTC	2 cut(s)	242, 376
Tru1I	TTAA	2 cut(s)	159, 210
Tru9I	TTAA	2 cut(s)	159, 210
TscAI	CASTG	2 cut(s)	109, 244
TseFI	GTSAC	1 cut(s)	114
TseI	GCWGC	2 cut(s)	78, 308
Tsp45I	GTSAC	1 cut(s)	114
TspDTI	ATGAA	2 cut(s)	245, 289
TspRI	CASTG	2 cut(s)	109, 244
VpaK11BI	GGWCC	1 cut(s)	286
VspI	ATTAAT	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.