Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006992

Physical Location & Seq

Genomic Coordinates Reverse (-)

26579667 .. 26583049

Gene Structure 3383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0269900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGAGGCACTGGATTCTTTGGGAGAGCCTGATATCAATGATGTCGAAGAAGAACAAGTTCACTATGCTTCTGGGCCCGCATCCAAATTGCAACCCAGGGCGGTTGTGTCCAAGGCTCGCTGGAATGATGAGATGGGCATGGCTCAGGTCGTAGTTCAGAAGGGCACATTTTCCAAGTCTACTGGAATTGTTCGTAGTGGCAACCTCTATTACTCCATTGAGGAAGTTCTGTTTTTGGTTGAAATAGGGGCTTTAGTTCTCTTGGATGAGAGTGATACTGGCCGCCTTTCCTTGGAAGATGTATATGTGAAGATGTCGGGTGGGAAGTATGGATGCTGTTGGGAGGAATTTCGAGCTTATAGGCAACTCAAATCTCTTGGTTACATTGTTGGGCGTTATGGTATTCCCTGGTCTATGAAGAAGGCTAAGAGTAATTGTGAATCTATTTCTTCCAAAGGTTGTCCTGACAGTGATGAGGCGGTGAACTTGGAATCAGAAGAGATCAGGTCTGTCATTGGATTGTTCAATGAGATGCAGATTAATGAAGCCAGGCCGGTTTTTAATGTGTATCTCCCTAACAGCAAGTTCAGGAAGTCTTCTCCCGGTGATCCATGCTTTGTGCTCTGTTTTACTAGCTTCATGCAAACATATGAAGCCAATTCTTTTGCAAAGGTTTTGCAGAGTAGCAGCAAACAGGGATATCCGCCATCCAGAGCAGAGCTTGAAGCCCTCGAGGGACAATGTAGGAGCATTCCTTTGAAGTTTTGTAATGTGGAGCAGGGACGGGTGAGTTTCTTTTCCTTTGACAAGGTGGAACTTCCTATCCTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005513 GO:0008150 GO:0009593 GO:0010035 GO:0010038 GO:0010099 GO:0042221 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051592 GO:0051606 GO:0065007 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

277

Amino Acids

30.93

Weight (kDa)

5.01

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_int_end_N2	PF12928	36 - 87	1.9e-11	tRNA-splicing endonuclease subunit sen54 N-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43810
fragaria_vesca	FvH4_1g30270
prunus_persica	Prupe.4G269100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0491111 RchiOBHm_Chr3g0495081 RchiOBHm_Chr3g0495111
rosa_multiflora	Rmu_sc0000340.1_g000030 Rmu_sc0005038.1_g000030 Rmu_ssc0000058.1_g000018
rosa_roxburghii	Rroxscaffold_6G00393160
rosa_rugosa	Rorug03G0246300 Rorug03G0269900 Rorug03G0270800
rosa_samantha	Rh3AG296500 Rh3AG318900 Rh3AG319100 Rh3CG329800 Rh3CG350900 Rh3DG330300 Rh3DG353100 Rh3DG353400
rosa_wichuraiana	Rw3G026170 Rw3G027800 Rw3G027850 Rw3G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	731
AccI	GTMKAC	1 cut(s)	179
AciI	CCGC	5 cut(s)	78, 101, 283, 479, 704
AclWI	GGATC	1 cut(s)	602
AcoI	YGGCCR	1 cut(s)	280
AcsI	RAATTY	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	4 cut(s)	242, 526, 725, 760
AjnI	CCWGG	3 cut(s)	95, 407, 548
AloI	GAACNNNNNNTCC	1 cut(s)	807
AluBI	AGCT	3 cut(s)	356, 636, 721
AluI	AGCT	3 cut(s)	356, 636, 721
Alw21I	GWGCWC	1 cut(s)	624
AlwI	GGATC	1 cut(s)	602
Ama87I	CYCGRG	1 cut(s)	731
AoxI	GGCC	3 cut(s)	74, 280, 551
ApaI	GGGCCC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	687
ApoI	RAATTY	1 cut(s)	347
AseI	ATTAAT	1 cut(s)	540
Asp700I	GAANNNNTTC	1 cut(s)	57
AspS9I	GGNCC	2 cut(s)	74, 75
AsuC2I	CCSGG	1 cut(s)	603
AsuHPI	GGTGA	3 cut(s)	493, 617, 799
AvaI	CYCGRG	1 cut(s)	731
BaeGI	GKGCMC	2 cut(s)	78, 167
BanII	GRGCYC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	624
BbvI	GCAGC	1 cut(s)	699
BccI	CCATC	2 cut(s)	127, 715
BciT130I	CCWGG	3 cut(s)	97, 409, 550
BcnI	CCSGG	1 cut(s)	603
BfaI	CTAG	2 cut(s)	633, 827
BisI	GCNGC	2 cut(s)	283, 688
BlsI	GCNGC	2 cut(s)	284, 689
Bme1390I	CCNGG	4 cut(s)	97, 409, 550, 603
BmeT110I	CYCGRG	1 cut(s)	731
BmgT120I	GGNCC	2 cut(s)	74, 75
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	4 cut(s)	97, 409, 550, 603
BmsI	GCATC	3 cut(s)	89, 323, 522
BpiI	GAAGAC	1 cut(s)	588
Bpu10I	CCTNAGC	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	603
BsaJI	CCNNGG	5 cut(s)	95, 96, 111, 291, 407
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse118I	RCCGGY	1 cut(s)	553
Bse1I	ACTGG	3 cut(s)	15, 187, 283
BseBI	CCWGG	3 cut(s)	97, 409, 550
BseDI	CCNNGG	5 cut(s)	95, 96, 111, 291, 407
BseGI	GGATG	4 cut(s)	80, 271, 338, 707
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	3 cut(s)	15, 187, 283
BseSI	GKGCMC	2 cut(s)	78, 167
BseXI	GCAGC	1 cut(s)	699
BshFI	GGCC	3 cut(s)	76, 282, 553
BsiHKAI	GWGCWC	1 cut(s)	624
BsiHKCI	CYCGRG	1 cut(s)	731
BsiSI	CCGG	2 cut(s)	554, 603
BslFI	GGGAC	2 cut(s)	750, 795
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmFI	GGGAC	2 cut(s)	750, 795
BsmI	GAATGC	1 cut(s)	750
BsnI	GGCC	3 cut(s)	76, 282, 553
BsoBI	CYCGRG	1 cut(s)	731
Bsp120I	GGGCCC	1 cut(s)	74
Bsp1286I	GDGCHC	3 cut(s)	78, 167, 624
Bsp143I	GATC	2 cut(s)	501, 607
BspACI	CCGC	5 cut(s)	78, 101, 283, 479, 704
BspANI	GGCC	3 cut(s)	76, 282, 553
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	76
BspPI	GGATC	1 cut(s)	602
BsrFI	RCCGGY	1 cut(s)	553
BsrI	ACTGG	3 cut(s)	15, 187, 283
BssAI	RCCGGY	1 cut(s)	553
BssECI	CCNNGG	5 cut(s)	95, 96, 111, 291, 407
BssMI	GATC	2 cut(s)	501, 607
BssT1I	CCWWGG	2 cut(s)	111, 291
Bst2UI	CCWGG	3 cut(s)	97, 409, 550
Bst4CI	ACNGT	1 cut(s)	470
Bst6I	CTCTTC	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	78, 118
BstDEI	CTNAG	2 cut(s)	144, 426
BstF5I	GGATG	4 cut(s)	80, 271, 338, 707
BstKTI	GATC	2 cut(s)	504, 610
BstMBI	GATC	2 cut(s)	501, 607
BstNI	CCWGG	3 cut(s)	97, 409, 550
BstSCI	CCNGG	4 cut(s)	95, 407, 548, 601
BstSLI	GKGCMC	2 cut(s)	78, 167
BstV1I	GCAGC	1 cut(s)	699
BstV2I	GAAGAC	1 cut(s)	588
BsuRI	GGCC	3 cut(s)	76, 282, 553
BtsCI	GGATG	4 cut(s)	80, 271, 338, 707
BtsIMutI	CAGTG	2 cut(s)	8, 475
Cac8I	GCNNGC	2 cut(s)	78, 118
Cfr10I	RCCGGY	1 cut(s)	553
Cfr13I	GGNCC	2 cut(s)	74, 75
CviAII	CATG	3 cut(s)	139, 612, 640
DdeI	CTNAG	2 cut(s)	144, 426
DpnI	GATC	2 cut(s)	503, 609
DpnII	GATC	2 cut(s)	501, 607
EaeI	YGGCCR	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
EciI	GGCGGA	1 cut(s)	693
Eco130I	CCWWGG	2 cut(s)	111, 291
Eco24I	GRGCYC	1 cut(s)	78
Eco32I	GATATC	2 cut(s)	34, 701
Eco88I	CYCGRG	1 cut(s)	731
EcoRII	CCWGG	3 cut(s)	95, 407, 548
EcoRV	GATATC	2 cut(s)	34, 701
EcoT14I	CCWWGG	2 cut(s)	111, 291
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	2 cut(s)	111, 291
FaeI	CATG	3 cut(s)	142, 615, 643
FaqI	GGGAC	2 cut(s)	750, 795
FatI	CATG	3 cut(s)	138, 611, 639
FauI	CCCGC	1 cut(s)	85
FauNDI	CATATG	1 cut(s)	649
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	2 cut(s)	283, 688
FokI	GGATG	4 cut(s)	67, 278, 345, 694
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	2 cut(s)	283, 688
FspBI	CTAG	2 cut(s)	633, 827
GluI	GCNGC	2 cut(s)	283, 688
HaeIII	GGCC	3 cut(s)	76, 282, 553
HapII	CCGG	2 cut(s)	554, 603
Hin1II	CATG	3 cut(s)	142, 615, 643
HinfI	GANTC	3 cut(s)	14, 440, 491
HpaII	CCGG	2 cut(s)	554, 603
HphI	GGTGA	3 cut(s)	493, 617, 799
Hpy166II	GTNNAC	3 cut(s)	61, 180, 484
Hpy188I	TCNGA	2 cut(s)	159, 496
Hpy188III	TCNNGA	3 cut(s)	464, 589, 711
Hpy8I	GTNNAC	3 cut(s)	61, 180, 484
HpyAV	CCTTC	2 cut(s)	154, 415
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4V	TGCA	5 cut(s)	91, 535, 643, 668, 679
HpyF3I	CTNAG	2 cut(s)	144, 426
Hsp92II	CATG	3 cut(s)	142, 615, 643
Kzo9I	GATC	2 cut(s)	501, 607
LmnI	GCTCC	2 cut(s)	747, 775
Lsp1109I	GCAGC	1 cut(s)	699
LweI	GCATC	3 cut(s)	89, 323, 522
MaeI	CTAG	2 cut(s)	633, 827
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	2 cut(s)	503, 609
MboI	GATC	2 cut(s)	501, 607
MboII	GAAGA	8 cut(s)	59, 62, 308, 322, 430, 441, 509, 588
MhlI	GDGCHC	3 cut(s)	78, 167, 624
MluCI	AATT	5 cut(s)	86, 186, 347, 433, 658
MnlI	CCTC	6 cut(s)	214, 215, 337, 469, 727, 740
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	2 cut(s)	540, 561
MspI	CCGG	2 cut(s)	554, 603
MspR9I	CCNGG	4 cut(s)	97, 409, 550, 603
Mva1269I	GAATGC	1 cut(s)	750
MvaI	CCWGG	3 cut(s)	97, 409, 550
NciI	CCSGG	1 cut(s)	603
NdeI	CATATG	1 cut(s)	649
NdeII	GATC	2 cut(s)	501, 607
NlaIII	CATG	3 cut(s)	142, 615, 643
NlaIV	GGNNCC	1 cut(s)	76
PaeR7I	CTCGAG	1 cut(s)	731
PasI	CCCWGGG	1 cut(s)	96
PctI	GAATGC	1 cut(s)	750
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	3 cut(s)	14, 440, 491
PkrI	GCNGC	2 cut(s)	284, 689
PshBI	ATTAAT	1 cut(s)	540
Psp6I	CCWGG	3 cut(s)	95, 407, 548
PspGI	CCWGG	3 cut(s)	95, 407, 548
PspN4I	GGNNCC	1 cut(s)	76
PspOMI	GGGCCC	1 cut(s)	74
PspPI	GGNCC	2 cut(s)	74, 75
PspXI	VCTCGAGB	1 cut(s)	731
SaqAI	TTAA	2 cut(s)	540, 561
SatI	GCNGC	2 cut(s)	283, 688
Sau3AI	GATC	2 cut(s)	501, 607
Sau96I	GGNCC	2 cut(s)	74, 75
ScrFI	CCNGG	4 cut(s)	97, 409, 550, 603
SduI	GDGCHC	3 cut(s)	78, 167, 624
SetI	ASST	9 cut(s)	150, 207, 358, 460, 509, 638, 675, 723, 813
SfaNI	GCATC	3 cut(s)	89, 323, 522
Sfr274I	CTCGAG	1 cut(s)	731
SlaI	CTCGAG	1 cut(s)	731
SmlI	CTYRAG	1 cut(s)	731
SmoI	CTYRAG	1 cut(s)	731
Sse9I	AATT	5 cut(s)	86, 186, 347, 433, 658
SsiI	CCGC	5 cut(s)	78, 101, 283, 479, 704
SspMI	CTAG	2 cut(s)	633, 827
StyD4I	CCNGG	4 cut(s)	95, 407, 548, 601
StyI	CCWWGG	2 cut(s)	111, 291
TaaI	ACNGT	1 cut(s)	470
TaqI	TCGA	3 cut(s)	45, 352, 732
TasI	AATT	5 cut(s)	86, 186, 347, 433, 658
TauI	GCSGC	1 cut(s)	285
TfiI	GAWTC	3 cut(s)	14, 440, 491
Tru1I	TTAA	2 cut(s)	540, 561
Tru9I	TTAA	2 cut(s)	540, 561
TscAI	CASTG	2 cut(s)	15, 475
TseI	GCWGC	1 cut(s)	687
TspDTI	ATGAA	4 cut(s)	431, 558, 628, 666
TspRI	CASTG	2 cut(s)	15, 475
VspI	ATTAAT	1 cut(s)	540
XapI	RAATTY	1 cut(s)	347
XhoI	CTCGAG	1 cut(s)	731
XmiI	GTMKAC	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	57
XspI	CTAG	2 cut(s)	633, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.