Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0006992

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG350900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCCGATCAACTCACCGATGATCAGATCTCTGAGTTCAAGGAAGCCTTCAGCCTCTTCGACAAGGACGGCGATGGTTGTATCACTACCAAGGAGCTTGGGACTGTCATGAGGTCACTGGGCCAGAACCCAACCGAGGCTGAGCTCCAGGACATGATCAATGAAGTGGATGCTGATGGTAATGGGACCATCGATTTTCCTGAATTCTTGAACCTCATGGCAAGGAAGATGAAAGACACCGACTCTGAGGAGGAGTTGAAAGAGGCTTTTAGAGTTTTTGACAAGGATCAGAATGGTTTCATATCTGCTGCTGAGCTGCGTCATGTGATGACAAATCTTGGGGAGAAGCTCACTGATGAGGAAGTTGATGAGATGATCCGCGAGGCTGATGTTGATGGTGATGGACAGATAAATTATGAGGAGTTTGTCAAGGTGATGATGGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005513 GO:0008150 GO:0009593 GO:0010035 GO:0010038 GO:0010099 GO:0042221 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051592 GO:0051606 GO:0065007 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

149

Amino Acids

16.85

Weight (kDa)

4.11

Isoelectric Point (pI)

24.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIF-1	PF21008	7 - 76	2.9e-08	Allograft inflammatory factor 1
EF-hand_1	PF00036	12 - 40	3.8e-09	EF hand domain
EF-hand_7	PF13499	12 - 73	1.8e-17	EF-hand domain pair
EF-hand_6	PF13405	12 - 41	2.7e-09	EF-hand domain
EF-hand_9	PF14658	15 - 75	5.5e-10	EF-hand domain
EF-hand_8	PF13833	25 - 75	7.3e-11	EF-hand domain pair
EF-hand_1	PF00036	48 - 75	3.2e-08	EF hand domain
EF-hand_7	PF13499	83 - 147	5.9e-22	EF-hand domain pair
AIF-1	PF21008	84 - 149	2.8e-06	Allograft inflammatory factor 1
EF-hand_1	PF00036	85 - 112	2.5e-09	EF hand domain
EF-hand_6	PF13405	85 - 114	2e-09	EF-hand domain
EF-hand_5	PF13202	86 - 110	1.3e-06	EF hand
EF-hand_9	PF14658	88 - 148	3.3e-07	EF-hand domain
EF-hand_8	PF13833	98 - 146	1.1e-12	EF-hand domain pair
EF-hand_1	PF00036	121 - 148	3.7e-10	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43810
fragaria_vesca	FvH4_1g30270
prunus_persica	Prupe.4G269100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0491111 RchiOBHm_Chr3g0495081 RchiOBHm_Chr3g0495111
rosa_multiflora	Rmu_sc0000340.1_g000030 Rmu_sc0005038.1_g000030 Rmu_ssc0000058.1_g000018
rosa_roxburghii	Rroxscaffold_6G00393160
rosa_rugosa	Rorug03G0246300 Rorug03G0269900 Rorug03G0270800
rosa_samantha	Rh3AG296500 Rh3AG318900 Rh3AG319100 Rh3CG329800 Rh3CG350900 Rh3DG330300 Rh3DG353100 Rh3DG353400
rosa_wichuraiana	Rw3G026170 Rw3G027800 Rw3G027850 Rw3G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	381
AciI	CCGC	1 cut(s)	379
AclWI	GGATC	2 cut(s)	294, 370
AcoI	YGGCCR	2 cut(s)	3, 441
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	3 cut(s)	40, 211, 259
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	4 cut(s)	97, 145, 316, 349
AluI	AGCT	4 cut(s)	97, 145, 316, 349
Alw21I	GWGCWC	1 cut(s)	147
AlwI	GGATC	2 cut(s)	294, 370
AoxI	GGCC	3 cut(s)	3, 121, 441
ApeKI	GCWGC	2 cut(s)	308, 316
ApoI	RAATTY	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	296
AspS9I	GGNCC	2 cut(s)	121, 186
AsuHPI	GGTGA	3 cut(s)	7, 410, 445
AvaII	GGWCC	1 cut(s)	186
BalI	TGGCCA	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	295, 303
BccI	CCATC	6 cut(s)	68, 170, 197, 389, 395, 433
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	149
BclI	TGATCA	2 cut(s)	22, 156
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	2 cut(s)	309, 317
BlpI	GCTNAGC	2 cut(s)	141, 312
BlsI	GCNGC	2 cut(s)	310, 318
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	186
BmgT120I	GGNCC	2 cut(s)	121, 186
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	149
BmrI	ACTGGG	1 cut(s)	128
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	128
BpmI	CTGGAG	1 cut(s)	131
Bpu1102I	GCTNAGC	2 cut(s)	141, 312
Bsa29I	ATCGAT	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	90, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	149
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	90, 135
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	4 cut(s)	24, 132, 237, 303
BseNI	ACTGG	1 cut(s)	123
BseRI	GAGGAG	3 cut(s)	263, 266, 434
BseXI	GCAGC	2 cut(s)	295, 303
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	3 cut(s)	5, 123, 443
BshVI	ATCGAT	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	147
BslFI	GGGAC	2 cut(s)	115, 199
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmFI	GGGAC	2 cut(s)	115, 199
BsnI	GGCC	3 cut(s)	5, 123, 443
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	6 cut(s)	7, 22, 27, 156, 286, 375
Bsp1720I	GCTNAGC	2 cut(s)	141, 312
BspACI	CCGC	1 cut(s)	379
BspANI	GGCC	3 cut(s)	5, 123, 443
BspCNI	CTCAG	4 cut(s)	25, 133, 238, 304
BspDI	ATCGAT	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	381
BspHI	TCATGA	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	2 cut(s)	294, 370
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	2 cut(s)	90, 135
BssMI	GATC	6 cut(s)	7, 22, 27, 156, 286, 375
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	62
BstDEI	CTNAG	4 cut(s)	33, 141, 246, 312
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	381
BstKTI	GATC	6 cut(s)	10, 25, 30, 159, 289, 378
BstMBI	GATC	6 cut(s)	7, 22, 27, 156, 286, 375
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	295, 303
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	192
BsuRI	GGCC	3 cut(s)	5, 123, 443
BsuTUI	ATCGAT	1 cut(s)	192
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	2 cut(s)	116, 351
CciI	TCATGA	1 cut(s)	108
Cfr13I	GGNCC	2 cut(s)	121, 186
ClaI	ATCGAT	1 cut(s)	192
CseI	GACGC	1 cut(s)	308
CviAII	CATG	4 cut(s)	109, 154, 217, 323
DdeI	CTNAG	4 cut(s)	33, 141, 246, 312
DpnI	GATC	6 cut(s)	9, 24, 29, 158, 288, 377
DpnII	GATC	6 cut(s)	7, 22, 27, 156, 286, 375
EaeI	YGGCCR	2 cut(s)	3, 441
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	34
EcoICRI	GAGCTC	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	4 cut(s)	112, 157, 220, 326
FaiI	YATR	6 cut(s)	110, 155, 218, 302, 324, 417
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	2 cut(s)	115, 199
FatI	CATG	4 cut(s)	108, 153, 216, 322
FbaI	TGATCA	2 cut(s)	22, 156
Fnu4HI	GCNGC	2 cut(s)	309, 317
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	2 cut(s)	309, 317
GluI	GCNGC	2 cut(s)	309, 317
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	3 cut(s)	5, 123, 443
HgaI	GACGC	1 cut(s)	308
Hin1II	CATG	4 cut(s)	112, 157, 220, 326
HinfI	GANTC	1 cut(s)	242
HphI	GGTGA	3 cut(s)	7, 410, 445
Hpy188I	TCNGA	4 cut(s)	27, 34, 247, 291
Hpy188III	TCNNGA	3 cut(s)	109, 200, 208
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	106
HpyF3I	CTNAG	4 cut(s)	33, 141, 246, 312
Hsp92II	CATG	4 cut(s)	112, 157, 220, 326
Ksp22I	TGATCA	2 cut(s)	22, 156
Kzo9I	GATC	6 cut(s)	7, 22, 27, 156, 286, 375
LmnI	GCTCC	2 cut(s)	94, 150
LpnPI	CCDG	5 cut(s)	104, 134, 137, 161, 213
Lsp1109I	GCAGC	2 cut(s)	295, 303
LweI	GCATC	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	6 cut(s)	9, 24, 29, 158, 288, 377
MboI	GATC	6 cut(s)	7, 22, 27, 156, 286, 375
MboII	GAAGA	2 cut(s)	49, 238
MflI	RGATCY	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	147
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	2 cut(s)	203, 412
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	1 cut(s)	236
Mox20I	TGGCCA	1 cut(s)	443
MroXI	GAANNNNTTC	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	381
NdeII	GATC	6 cut(s)	7, 22, 27, 156, 286, 375
NlaIII	CATG	4 cut(s)	112, 157, 220, 326
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	114
PagI	TCATGA	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	296
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	310, 318
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Psp124BI	GAGCTC	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	121, 186
PsuI	RGATCY	1 cut(s)	27
SacI	GAGCTC	1 cut(s)	147
SatI	GCNGC	2 cut(s)	309, 317
Sau3AI	GATC	6 cut(s)	7, 22, 27, 156, 286, 375
Sau96I	GGNCC	2 cut(s)	121, 186
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	7 cut(s)	99, 116, 147, 216, 318, 351, 435
SfaNI	GCATC	1 cut(s)	160
SinI	GGWCC	1 cut(s)	186
Sse9I	AATT	2 cut(s)	203, 412
SsiI	CCGC	1 cut(s)	379
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	2 cut(s)	60, 192
TasI	AATT	2 cut(s)	203, 412
TscAI	CASTG	2 cut(s)	123, 358
TseFI	GTSAC	1 cut(s)	114
TseI	GCWGC	2 cut(s)	308, 316
Tsp45I	GTSAC	1 cut(s)	114
TspDTI	ATGAA	3 cut(s)	177, 245, 289
TspRI	CASTG	2 cut(s)	123, 358
VpaK11BI	GGWCC	1 cut(s)	186
XapI	RAATTY	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.