Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006992

Physical Location & Seq

Genomic Coordinates Forward (+)

23073340 .. 23075382

Gene Structure 2043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0246300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCACCAAAAGCGAGAGTTCCCCGAAAGACCCGAAACCCAGATCTGGTCCGTGGAGTGGGTAAGTACTCCAGGTCCAAGATGTACCACAAGCGCGGTCTCTGGGCCATCAAGGCCAAAAATGGCGGTGCCTTCCCACGTCACGACGCCAAGCCGGCGGCTGAGGCTCCGTCGGTGAAGCCTCCCAAGTTCTACCCTGCTGAGGACGTCAAGAAGCCCCTGGTCAACAAGCACAAGCCCAAGCCCACCAAGCTCAGGGCGAGTATTACACCCGGGACTGTGTTGATTATACTGGCTGGAAGGTTTAAGGGGAAGAGAGTTGTTTTCCTTAAGCAGCTTTCATCTGGGTTGCTTCTTGTTACTGGGCCATTCAAGATTAATGGTGTTCCTTTGAGACGTGTGAATCAGTCCTACGTGATTGGCACTTCCACCAAGGTCGATATTTCTGGGGTTAATGTGGAAAAATTTGATGACAAGTATTTCGGAAAGGCCGTGGAAAAGAAGAAGAAGAAGGGGGAGGGAGAGTTTTTTGAGGCAGAGAAAGAGGACAAGAAAGTGTTCCCACAAGAGAGGAAAGATGATCAGAAGAGTGTGGATGCTTCGTTGATAAAGTCCATTGAGGCTGTCCCAGACTTGAAGACATACTTAGCTGCAAGATTCTCTCTTAGGTCTGGCATGAAGCCTCATGAGCTTGTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005513 GO:0008150 GO:0009593 GO:0010035 GO:0010038 GO:0010099 GO:0042221 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051592 GO:0051606 GO:0065007 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

233

Amino Acids

26.04

Weight (kDa)

10.26

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6e_N	PF03868	3 - 61	1.8e-16	Ribosomal protein L6, N-terminal domain
Ribosomal_L6e	PF01159	126 - 233	5e-41	Ribosomal protein L6e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43810
fragaria_vesca	FvH4_1g30270
prunus_persica	Prupe.4G269100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0491111 RchiOBHm_Chr3g0495081 RchiOBHm_Chr3g0495111
rosa_multiflora	Rmu_sc0000340.1_g000030 Rmu_sc0005038.1_g000030 Rmu_ssc0000058.1_g000018
rosa_roxburghii	Rroxscaffold_6G00393160
rosa_rugosa	Rorug03G0246300 Rorug03G0269900 Rorug03G0270800
rosa_samantha	Rh3AG296500 Rh3AG318900 Rh3AG319100 Rh3CG329800 Rh3CG350900 Rh3DG330300 Rh3DG353100 Rh3DG353400
rosa_wichuraiana	Rw3G026170 Rw3G027800 Rw3G027850 Rw3G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccB1I	GGYRCC	2 cut(s)	4, 128
AccII	CGCG	1 cut(s)	96
AciI	CCGC	3 cut(s)	96, 126, 158
AcsI	RAATTY	1 cut(s)	464
AcyI	GRCGYC	2 cut(s)	147, 207
AfaI	GTAC	2 cut(s)	68, 86
AfiI	CCNNNNNNNGG	4 cut(s)	46, 58, 202, 255
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	2 cut(s)	373, 637
AjiI	CACGTC	2 cut(s)	140, 398
AjnI	CCWGG	2 cut(s)	71, 219
AluBI	AGCT	4 cut(s)	253, 337, 650, 691
AluI	AGCT	4 cut(s)	253, 337, 650, 691
Alw26I	GTCTC	2 cut(s)	104, 388
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	4 cut(s)	105, 114, 365, 489
ApeKI	GCWGC	2 cut(s)	334, 650
ApoI	RAATTY	1 cut(s)	464
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AseI	ATTAAT	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	4 cut(s)	49, 75, 105, 365
AsuC2I	CCSGG	2 cut(s)	273, 274
AsuHPI	GGTGA	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	49, 75
BanI	GGYRCC	2 cut(s)	4, 128
BbsI	GAAGAC	1 cut(s)	644
BbvCI	CCTCAGC	2 cut(s)	162, 201
BbvI	GCAGC	2 cut(s)	346, 637
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	476
BciT130I	CCWGG	2 cut(s)	73, 221
BclI	TGATCA	1 cut(s)	580
BcnI	CCSGG	2 cut(s)	273, 274
BcoDI	GTCTC	2 cut(s)	104, 388
BfrI	CTTAAG	1 cut(s)	329
BglI	GCCNNNNNGGC	2 cut(s)	113, 155
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	3 cut(s)	159, 335, 651
BlsI	GCNGC	3 cut(s)	160, 336, 652
BmcAI	AGTACT	1 cut(s)	68
Bme1390I	CCNGG	4 cut(s)	73, 221, 273, 274
Bme18I	GGWCC	2 cut(s)	49, 75
BmeT110I	CYCGRG	1 cut(s)	272
BmgBI	CACGTC	2 cut(s)	140, 398
BmgT120I	GGNCC	4 cut(s)	49, 75, 105, 365
BmiI	GGNNCC	3 cut(s)	6, 130, 168
BmrFI	CCNGG	4 cut(s)	73, 221, 273, 274
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	1 cut(s)	586
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	644
BpmI	CTGGAG	1 cut(s)	55
Bpu10I	CCTNAGC	3 cut(s)	162, 201, 254
BpuMI	CCSGG	2 cut(s)	273, 274
BsaAI	YACGTR	1 cut(s)	415
BsaHI	GRCGYC	2 cut(s)	147, 207
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	5 cut(s)	52, 219, 272, 432, 492
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 58, 202, 255
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	2 cut(s)	297, 367
BseBI	CCWGG	2 cut(s)	73, 221
BseDI	CCNNGG	5 cut(s)	52, 219, 272, 432, 492
BseGI	GGATG	1 cut(s)	601
BseLI	CCNNNNNNNGG	4 cut(s)	46, 58, 202, 255
BseMII	CTCAG	3 cut(s)	153, 192, 268
BseNI	ACTGG	2 cut(s)	297, 367
BseXI	GCAGC	2 cut(s)	346, 637
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	4 cut(s)	107, 116, 367, 491
BshNI	GGYRCC	2 cut(s)	4, 128
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	2 cut(s)	155, 273
BslFI	GGGAC	2 cut(s)	289, 611
BslI	CCNNNNNNNGG	4 cut(s)	46, 58, 202, 255
BsmAI	GTCTC	2 cut(s)	104, 388
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	2 cut(s)	289, 611
BsnI	GGCC	4 cut(s)	107, 116, 367, 491
Bso31I	GGTCTC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	272
Bsp143I	GATC	2 cut(s)	43, 580
BspACI	CCGC	3 cut(s)	96, 126, 158
BspANI	GGCC	4 cut(s)	107, 116, 367, 491
BspCNI	CTCAG	3 cut(s)	154, 193, 267
BspFNI	CGCG	1 cut(s)	96
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	3 cut(s)	6, 130, 168
BspT107I	GGYRCC	2 cut(s)	4, 128
BspTI	CTTAAG	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	297, 367
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	5 cut(s)	52, 219, 272, 432, 492
BssMI	GATC	2 cut(s)	43, 580
BssNI	GRCGYC	2 cut(s)	147, 207
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	2 cut(s)	73, 221
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	2 cut(s)	308, 581
BstACI	GRCGYC	2 cut(s)	147, 207
BstAFI	CTTAAG	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	415
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	5 cut(s)	162, 201, 254, 646, 665
BstDSI	CCRYGG	2 cut(s)	52, 492
BstF5I	GGATG	1 cut(s)	601
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	2 cut(s)	46, 583
BstMAI	GTCTC	2 cut(s)	104, 388
BstMBI	GATC	2 cut(s)	43, 580
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 113, 155, 164, 250, 688
BstNI	CCWGG	2 cut(s)	73, 221
BstSCI	CCNGG	4 cut(s)	71, 219, 271, 272
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	346, 637
BstV2I	GAAGAC	1 cut(s)	644
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	4 cut(s)	107, 116, 367, 491
BtgI	CCRYGG	2 cut(s)	52, 492
BtrI	CACGTC	2 cut(s)	140, 398
BtsCI	GGATG	1 cut(s)	601
Cac8I	GCNNGC	1 cut(s)	156
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	1 cut(s)	96
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	4 cut(s)	49, 75, 105, 365
Cfr9I	CCCGGG	1 cut(s)	272
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	2 cut(s)	67, 85
CviAII	CATG	2 cut(s)	676, 686
CviQI	GTAC	2 cut(s)	67, 85
DdeI	CTNAG	5 cut(s)	162, 201, 254, 646, 665
DpnI	GATC	2 cut(s)	45, 582
DpnII	GATC	2 cut(s)	43, 580
Eam1104I	CTCTTC	2 cut(s)	308, 581
EarI	CTCTTC	2 cut(s)	308, 581
Eco130I	CCWWGG	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	2 cut(s)	49, 75
Eco88I	CYCGRG	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	71, 219
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	2 cut(s)	679, 689
FaiI	YATR	4 cut(s)	290, 643, 677, 687
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FaqI	GGGAC	2 cut(s)	289, 611
FatI	CATG	2 cut(s)	675, 685
FbaI	TGATCA	1 cut(s)	580
Fnu4HI	GCNGC	3 cut(s)	159, 335, 651
FokI	GGATG	1 cut(s)	608
Fsp4HI	GCNGC	3 cut(s)	159, 335, 651
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	3 cut(s)	159, 335, 651
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	4 cut(s)	107, 116, 367, 491
HapII	CCGG	2 cut(s)	155, 273
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	96
Hin1I	GRCGYC	2 cut(s)	147, 207
Hin1II	CATG	2 cut(s)	679, 689
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	403, 657
HpaII	CCGG	2 cut(s)	155, 273
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	485, 585
Hpy188III	TCNNGA	4 cut(s)	143, 211, 373, 686
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	2 cut(s)	149, 175
HpyAV	CCTTC	3 cut(s)	142, 294, 505
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	4 cut(s)	139, 207, 397, 414
HpyCH4V	TGCA	1 cut(s)	653
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 113, 155, 164, 250, 688
HpyF3I	CTNAG	5 cut(s)	162, 201, 254, 646, 665
HpySE526I	ACGT	4 cut(s)	139, 207, 397, 414
Hsp92I	GRCGYC	2 cut(s)	147, 207
Hsp92II	CATG	2 cut(s)	679, 689
HspAI	GCGC	1 cut(s)	94
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	2 cut(s)	43, 580
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	2 cut(s)	346, 637
LweI	GCATC	1 cut(s)	586
MaeII	ACGT	4 cut(s)	139, 207, 397, 414
MaeIII	GTNAC	2 cut(s)	140, 358
MalI	GATC	2 cut(s)	45, 582
MboI	GATC	2 cut(s)	43, 580
MboII	GAAGA	6 cut(s)	325, 514, 517, 520, 598, 649
MflI	RGATCY	1 cut(s)	43
MluCI	AATT	1 cut(s)	464
MnlI	CCTC	9 cut(s)	157, 192, 196, 511, 526, 538, 564, 613, 693
MroNI	GCCGGC	1 cut(s)	154
MroXI	GAANNNNTTC	1 cut(s)	557
MseI	TTAA	4 cut(s)	306, 330, 378, 453
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	2 cut(s)	155, 273
MspR9I	CCNGG	4 cut(s)	73, 221, 273, 274
MvaI	CCWGG	2 cut(s)	73, 221
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	6 cut(s)	11, 113, 155, 164, 250, 688
NaeI	GCCGGC	1 cut(s)	156
NciI	CCSGG	2 cut(s)	273, 274
NdeII	GATC	2 cut(s)	43, 580
NgoMIV	GCCGGC	1 cut(s)	154
NlaIII	CATG	2 cut(s)	679, 689
NlaIV	GGNNCC	3 cut(s)	6, 130, 168
NmuCI	GTSAC	1 cut(s)	140
PagI	TCATGA	1 cut(s)	685
PcsI	WCGNNNNNNNCGW	1 cut(s)	489
PdiI	GCCGGC	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	557
PfeI	GAWTC	2 cut(s)	403, 657
PkrI	GCNGC	3 cut(s)	160, 336, 652
Ppu21I	YACGTR	1 cut(s)	415
PshBI	ATTAAT	1 cut(s)	378
Psp6I	CCWGG	2 cut(s)	71, 219
PspGI	CCWGG	2 cut(s)	71, 219
PspN4I	GGNNCC	3 cut(s)	6, 130, 168
PspPI	GGNCC	4 cut(s)	49, 75, 105, 365
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	2 cut(s)	68, 86
RsaNI	GTAC	2 cut(s)	67, 85
SaqAI	TTAA	4 cut(s)	306, 330, 378, 453
SatI	GCNGC	3 cut(s)	159, 335, 651
Sau3AI	GATC	2 cut(s)	43, 580
Sau96I	GGNCC	4 cut(s)	49, 75, 105, 365
ScaI	AGTACT	1 cut(s)	68
ScrFI	CCNGG	4 cut(s)	73, 221, 273, 274
SfaNI	GCATC	1 cut(s)	586
SfiI	GGCCNNNNNGGCC	1 cut(s)	113
SinI	GGWCC	2 cut(s)	49, 75
SmaI	CCCGGG	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	1 cut(s)	464
SsiI	CCGC	3 cut(s)	96, 126, 158
StyD4I	CCNGG	4 cut(s)	71, 219, 271, 272
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	4 cut(s)	142, 210, 400, 417
TaqI	TCGA	1 cut(s)	438
TasI	AATT	1 cut(s)	464
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	2 cut(s)	403, 657
Tru1I	TTAA	4 cut(s)	306, 330, 378, 453
Tru9I	TTAA	4 cut(s)	306, 330, 378, 453
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	2 cut(s)	334, 650
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	330, 692
TspGWI	ACGGA	2 cut(s)	41, 159
TspMI	CCCGGG	1 cut(s)	272
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	49, 75
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	1 cut(s)	464
XmaI	CCCGGG	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	557
ZraI	GACGTC	1 cut(s)	208
ZrmI	AGTACT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.