Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006104

Physical Location & Seq

Genomic Coordinates Forward (+)

16123426 .. 16128030

Gene Structure 4605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G44540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGGACTCCAATTGCATTCAGTTCCTCCATGACAAGACGATTCTCGTCACCGGTGTTCCCGGTTTCCTCGCCAAAGTGTTTGTGGAGAAAATATTGAGGATTCAACCAAAGGTAAAGAAGCTTTTCCTTCTTTTGAGAGCAGCAGACAATGAATCAGCCATGCAACGGTTTCACAGTGAGGTTTTGGAGAAAGATCTTTTTAGAGTGTTGAAAAACGCTTTAGGTGATGAGAATCTGAAAGCTTTCATAACAGAAAAAGTCGTACCTATTCCCGGTGATATATCCGTTGATAATTTGGGAGTGAAGGGTTCTGATCTCTTACAACATATGTGGAATGAGATTGATATCATTGTCAATGTAGCCGCCACAACGAACTTTGATGAAAGATATGATGTTGGTCTTAGCGTCAACACATTTGGACCGCTCAATGTCCTCAACTTTGCCAAGAAGTGTGTTAAAGGACAGTTGCTTCTTCATGTTTCAACCGCGTATGTGCGCGGAGAGAAGTCTGGACTTTTACATGAGAAAACATTTCACATGGGGGAGACATTGAACGGACATAGAAAATTAGTCATTGAGACCGAAATGGAGCTAATGAAACAAAAACTGAAAGAGCTACAGAAACAAAATTGTTCAGAAGAAGAGATTTCACAGTCTATGAAAGATCTTGGAATGTCAAGGGCAAAGCTTCATGGATGGCCAAACACATATGTGTTTACCAAATCAATGGGAGAGATGCTTCTTGGTAATTATAGAGAAAACCTTCCCATCGTTATCATCCGTCCCACAATGATCACTAGCACTTTTTCAGAACCATTTCCCGGTTGGATCGAAGGGTTAAGAACCATAGACAGTGTGATTGTTGCATATGGCAAAGGAAGGCTTAAATGTTTTCTTGCAGATCCAAACTCAGTCCTTGATCTTATACCTGTGGACATGGTCGCAAACGCAATGGTCACGGCTGCGGCAATACACGCAGGGAAGCTAGGTTCCCAGACCGTGTACCATGTCGGATCATCTTGTAAAAACCCGATCACATTCGAACAGATTCATGATCTCGCGGCTAGCTACTTCACGAAAAACCCTCTTGTTAGACGCGATGGTTCATCTATACTAGTCTCCAAAGGAACTATCTTGTCCACAATGGCTCAGTTCAGTTTCTACATGACCCTTCGTTACAAGCTACCTTTGCAGATGTTGCGATTGATATATGTAATTTATCCTTGGTGGAATGGTAATAAATATAAAGACATTGACCGCAAGATTAAGCTGGCGATGCGGTTGGTCGACCTCTACAGACCTTATGTCTTGTTTAAGGGCATATTTGACGATACGAATACTGAGAAACTGCGGTTGAAAAGAAAGGAGATTAATAAAGAAATGTATGGTTTGTTTGAATTTGATCCAAAGTCTATTGATTGGGAGGATTATATGACGACCATTCATATTCCCGGCCTCATCACCTATGTACTCAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010025 GO:0010166 GO:0010345 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

493

Amino Acids

56.22

Weight (kDa)

9.07

Isoelectric Point (pI)

30.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_4	PF07993	16 - 318	6.1e-77	Male sterility protein
Sterile	PF03015	393 - 493	1.2e-16	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44540 AT3G44540 AT3G44540 AT4G33790 AT4G33790 AT5G22500 AT5G22500
fragaria_vesca	FvH4_3g24571 FvH4_3g24571 FvH4_3g24571 FvH4_3g24571 FvH4_3g24571
malus_domestica	MD03G1141800.v1.1 MD11G1161800.v1.1
prunus_persica	Prupe.6G126900_v2.0.a1
pyrus_communis	pycom03g09660 pycom11g13340
rosa_chinensis	RchiOBHm_Chr5g0044101
rosa_laevigata	RLG00000034241
rosa_multiflora	Rmu_sc0000939.1_g000010
rosa_roxburghii	Rroxscaffold_1G00036930
rosa_rugosa	Rorug05G0210300
rosa_samantha	Rh5AG294500 Rh5BG303200 Rh5CG330200 Rh5DG311900
rosa_wichuraiana	Rw5G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	424
AccI	GTMKAC	1 cut(s)	1287
AccII	CGCG	4 cut(s)	488, 498, 1061, 1098
AciI	CCGC	9 cut(s)	363, 422, 486, 498, 965, 1061, 1258, 1279, 1351
AclWI	GGATC	4 cut(s)	836, 896, 1021, 1397
AcoI	YGGCCR	1 cut(s)	698
AcsI	RAATTY	1 cut(s)	1397
AfaI	GTAC	3 cut(s)	264, 1004, 1470
AfiI	CCNNNNNNNGG	3 cut(s)	165, 272, 821
AgeI	ACCGGT	1 cut(s)	50
AgsI	TTSAA	6 cut(s)	104, 211, 483, 553, 1357, 1397
AhdI	GACNNNNNGTC	1 cut(s)	1304
AhlI	ACTAGT	1 cut(s)	1114
AleI	CACNNNNGTG	1 cut(s)	710
AloI	GAACNNNNNNTCC	2 cut(s)	973, 1005
AluBI	AGCT	9 cut(s)	121, 242, 592, 616, 688, 985, 1068, 1183, 1270
AluI	AGCT	9 cut(s)	121, 242, 592, 616, 688, 985, 1068, 1183, 1270
Alw26I	GTCTC	3 cut(s)	539, 572, 1123
AlwI	GGATC	4 cut(s)	836, 896, 1021, 1397
AoxI	GGCC	2 cut(s)	698, 1453
ApeKI	GCWGC	2 cut(s)	140, 962
ApoI	RAATTY	1 cut(s)	1397
AseI	ATTAAT	1 cut(s)	1371
AsiGI	ACCGGT	1 cut(s)	50
Asp700I	GAANNNNTTC	5 cut(s)	122, 242, 762, 816, 1047
AspLEI	GCGC	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	419
AsuC2I	CCSGG	4 cut(s)	60, 273, 822, 1452
AsuHPI	GGTGA	4 cut(s)	40, 236, 287, 1453
AsuII	TTCGAA	1 cut(s)	1041
AsuNHI	GCTAGC	1 cut(s)	1064
AvaII	GGWCC	1 cut(s)	419
BalI	TGGCCA	1 cut(s)	700
BbvI	GCAGC	2 cut(s)	152, 949
BccI	CCATC	3 cut(s)	690, 776, 1094
BceAI	ACGGC	1 cut(s)	975
BclI	TGATCA	1 cut(s)	792
BcnI	CCSGG	4 cut(s)	60, 273, 822, 1452
BcoDI	GTCTC	3 cut(s)	539, 572, 1123
BcuI	ACTAGT	1 cut(s)	1114
BfaI	CTAG	4 cut(s)	798, 986, 1065, 1115
BfmI	CTRYAG	2 cut(s)	617, 1294
BglII	AGATCT	2 cut(s)	193, 664
BisI	GCNGC	5 cut(s)	141, 363, 963, 966, 1062
BlsI	GCNGC	5 cut(s)	142, 364, 964, 967, 1063
Bme1390I	CCNGG	4 cut(s)	60, 273, 822, 1452
Bme18I	GGWCC	1 cut(s)	419
BmeRI	GACNNNNNGTC	1 cut(s)	1304
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	1 cut(s)	991
BmrFI	CCNGG	4 cut(s)	60, 273, 822, 1452
BmsI	GCATC	2 cut(s)	726, 1266
BmtI	GCTAGC	1 cut(s)	1068
Bpu14I	TTCGAA	1 cut(s)	1041
BpuMI	CCSGG	4 cut(s)	60, 273, 822, 1452
BsaBI	GATNNNNATC	2 cut(s)	231, 344
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	1223
BsaWI	WCCGGW	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 272, 821
Bse118I	RCCGGY	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	957
Bse8I	GATNNNNATC	2 cut(s)	231, 344
BseDI	CCNNGG	1 cut(s)	1223
BseGI	GGATG	2 cut(s)	701, 777
BseJI	GATNNNNATC	2 cut(s)	231, 344
BseLI	CCNNNNNNNGG	3 cut(s)	165, 272, 821
BseMI	GCAATG	1 cut(s)	957
BseMII	CTCAG	3 cut(s)	924, 1163, 1332
BseXI	GCAGC	2 cut(s)	152, 949
Bsh1236I	CGCG	4 cut(s)	488, 498, 1061, 1098
BshFI	GGCC	2 cut(s)	700, 1455
BshTI	ACCGGT	1 cut(s)	50
BsiSI	CCGG	5 cut(s)	51, 60, 273, 822, 1452
BslFI	GGGAC	1 cut(s)	768
BslI	CCNNNNNNNGG	3 cut(s)	165, 272, 821
BsmAI	GTCTC	3 cut(s)	539, 572, 1123
BsmFI	GGGAC	1 cut(s)	768
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	2 cut(s)	700, 1455
Bso31I	GGTCTC	1 cut(s)	572
Bsp119I	TTCGAA	1 cut(s)	1041
BspACI	CCGC	9 cut(s)	363, 422, 486, 498, 965, 1061, 1258, 1279, 1351
BspANI	GGCC	2 cut(s)	700, 1455
BspCNI	CTCAG	3 cut(s)	923, 1162, 1333
BspFNI	CGCG	4 cut(s)	488, 498, 1061, 1098
BspHI	TCATGA	1 cut(s)	1051
BspLI	GGNNCC	1 cut(s)	991
BspOI	GCTAGC	1 cut(s)	1068
BspPI	GGATC	4 cut(s)	836, 896, 1021, 1397
BspT104I	TTCGAA	1 cut(s)	1041
BspTNI	GGTCTC	1 cut(s)	572
BsrBI	CCGCTC	1 cut(s)	424
BsrDI	GCAATG	1 cut(s)	957
BsrFI	RCCGGY	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	1223
BssT1I	CCWWGG	1 cut(s)	1223
Bst4CI	ACNGT	6 cut(s)	168, 176, 465, 654, 854, 1000
Bst6I	CTCTTC	1 cut(s)	636
BstAPI	GCANNNNNTGC	1 cut(s)	1198
BstBI	TTCGAA	1 cut(s)	1041
BstC8I	GCNNGC	2 cut(s)	1066, 1272
BstDEI	CTNAG	4 cut(s)	401, 910, 1149, 1341
BstF5I	GGATG	2 cut(s)	701, 777
BstFNI	CGCG	4 cut(s)	488, 498, 1061, 1098
BstHHI	GCGC	1 cut(s)	498
BstMAI	GTCTC	3 cut(s)	539, 572, 1123
BstMWI	GCNNNNNNNGC	4 cut(s)	974, 1189, 1198, 1276
BstSCI	CCNGG	4 cut(s)	58, 271, 820, 1450
BstSFI	CTRYAG	2 cut(s)	617, 1294
BstUI	CGCG	4 cut(s)	488, 498, 1061, 1098
BstV1I	GCAGC	2 cut(s)	152, 949
BstX2I	RGATCY	3 cut(s)	193, 664, 901
BstXI	CCANNNNNNTGG	1 cut(s)	727
BstYI	RGATCY	3 cut(s)	193, 664, 901
BsuRI	GGCC	2 cut(s)	700, 1455
BtgZI	GCGATG	2 cut(s)	1113, 1289
BtsCI	GGATG	2 cut(s)	701, 777
BtsIMutI	CAGTG	2 cut(s)	181, 859
Cac8I	GCNNGC	2 cut(s)	1066, 1272
CciI	TCATGA	1 cut(s)	1051
CfoI	GCGC	1 cut(s)	498
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	419
CseI	GACGC	2 cut(s)	394, 1104
Csp6I	GTAC	3 cut(s)	263, 1003, 1469
CspAI	ACCGGT	1 cut(s)	50
CspCI	CAANNNNNGTGG	2 cut(s)	311, 346
CviQI	GTAC	3 cut(s)	263, 1003, 1469
DdeI	CTNAG	4 cut(s)	401, 910, 1149, 1341
DriI	GACNNNNNGTC	1 cut(s)	1304
EaeI	YGGCCR	1 cut(s)	698
Eam1104I	CTCTTC	1 cut(s)	636
Eam1105I	GACNNNNNGTC	1 cut(s)	1304
EarI	CTCTTC	1 cut(s)	636
Eco130I	CCWWGG	1 cut(s)	1223
Eco31I	GGTCTC	1 cut(s)	572
Eco32I	GATATC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	419
EcoRV	GATATC	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	1223
ErhI	CCWWGG	1 cut(s)	1223
FalI	AAGNNNNNCTT	2 cut(s)	867, 899
FaqI	GGGAC	1 cut(s)	768
FauNDI	CATATG	3 cut(s)	327, 709, 868
FbaI	TGATCA	1 cut(s)	792
FblI	GTMKAC	1 cut(s)	1287
Fnu4HI	GCNGC	5 cut(s)	141, 363, 963, 966, 1062
FokI	GGATG	2 cut(s)	708, 764
Fsp4HI	GCNGC	5 cut(s)	141, 363, 963, 966, 1062
FspBI	CTAG	4 cut(s)	798, 986, 1065, 1115
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	5 cut(s)	141, 363, 963, 966, 1062
HaeIII	GGCC	2 cut(s)	700, 1455
HapII	CCGG	5 cut(s)	51, 60, 273, 822, 1452
HgaI	GACGC	2 cut(s)	394, 1104
HhaI	GCGC	1 cut(s)	498
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HincII	GTYRAC	2 cut(s)	409, 1288
HindII	GTYRAC	2 cut(s)	409, 1288
HindIII	AAGCTT	3 cut(s)	119, 240, 686
HinfI	GANTC	6 cut(s)	5, 40, 100, 152, 232, 1048
HpaII	CCGG	5 cut(s)	51, 60, 273, 822, 1452
HphI	GGTGA	4 cut(s)	40, 236, 287, 1453
Hpy166II	GTNNAC	6 cut(s)	409, 717, 934, 1003, 1140, 1288
Hpy188I	TCNGA	5 cut(s)	237, 313, 637, 811, 1013
Hpy188III	TCNNGA	3 cut(s)	510, 1052, 1075
Hpy8I	GTNNAC	6 cut(s)	409, 717, 934, 1003, 1140, 1288
HpyAV	CCTTC	6 cut(s)	137, 298, 773, 827, 873, 1181
HpyCH4III	ACNGT	6 cut(s)	168, 176, 465, 654, 854, 1000
HpyCH4V	TGCA	5 cut(s)	15, 163, 866, 899, 1192
HpyF10VI	GCNNNNNNNGC	4 cut(s)	974, 1189, 1198, 1276
HpyF3I	CTNAG	4 cut(s)	401, 910, 1149, 1341
HspAI	GCGC	1 cut(s)	496
Ksp22I	TGATCA	1 cut(s)	792
LmnI	GCTCC	1 cut(s)	589
Lsp1109I	GCAGC	2 cut(s)	152, 949
LweI	GCATC	2 cut(s)	726, 1266
MaeI	CTAG	4 cut(s)	798, 986, 1065, 1115
MaeIII	GTNAC	3 cut(s)	46, 955, 1175
MbiI	CCGCTC	1 cut(s)	424
MboII	GAAGA	3 cut(s)	464, 650, 653
MfeI	CAATTG	1 cut(s)	10
MflI	RGATCY	3 cut(s)	193, 664, 901
MlsI	TGGCCA	1 cut(s)	700
MluCI	AATT	7 cut(s)	10, 292, 566, 628, 748, 1215, 1397
MluNI	TGGCCA	1 cut(s)	700
MmeI	TCCRAC	2 cut(s)	806, 991
MnlI	CCTC	9 cut(s)	35, 77, 90, 172, 443, 1095, 1301, 1417, 1466
Mox20I	TGGCCA	1 cut(s)	700
MroXI	GAANNNNTTC	5 cut(s)	122, 242, 762, 816, 1047
MscI	TGGCCA	1 cut(s)	700
MseI	TTAA	6 cut(s)	456, 839, 885, 1266, 1314, 1371
MslI	CAYNNNNRTG	1 cut(s)	710
Msp20I	TGGCCA	1 cut(s)	700
MspI	CCGG	5 cut(s)	51, 60, 273, 822, 1452
MspR9I	CCNGG	4 cut(s)	60, 273, 822, 1452
MunI	CAATTG	1 cut(s)	10
Mva1269I	GAATGC	1 cut(s)	15
MvnI	CGCG	4 cut(s)	488, 498, 1061, 1098
MwoI	GCNNNNNNNGC	4 cut(s)	974, 1189, 1198, 1276
NciI	CCSGG	4 cut(s)	60, 273, 822, 1452
NdeI	CATATG	3 cut(s)	327, 709, 868
NheI	GCTAGC	1 cut(s)	1064
NlaIV	GGNNCC	1 cut(s)	991
NmuCI	GTSAC	2 cut(s)	46, 955
NspV	TTCGAA	1 cut(s)	1041
OliI	CACNNNNGTG	1 cut(s)	710
PagI	TCATGA	1 cut(s)	1051
PctI	GAATGC	1 cut(s)	15
PdmI	GAANNNNTTC	5 cut(s)	122, 242, 762, 816, 1047
PfeI	GAWTC	5 cut(s)	40, 100, 152, 232, 1048
PflFI	GACNNNGTC	1 cut(s)	938
PinAI	ACCGGT	1 cut(s)	50
PkrI	GCNGC	5 cut(s)	142, 364, 964, 967, 1063
PshBI	ATTAAT	1 cut(s)	1371
PspN4I	GGNNCC	1 cut(s)	991
PspPI	GGNCC	1 cut(s)	419
PsuI	RGATCY	3 cut(s)	193, 664, 901
PsyI	GACNNNGTC	1 cut(s)	938
RsaI	GTAC	3 cut(s)	264, 1004, 1470
RsaNI	GTAC	3 cut(s)	263, 1003, 1469
RseI	CAYNNNNRTG	1 cut(s)	710
SalI	GTCGAC	1 cut(s)	1286
SaqAI	TTAA	6 cut(s)	456, 839, 885, 1266, 1314, 1371
SatI	GCNGC	5 cut(s)	141, 363, 963, 966, 1062
Sau96I	GGNCC	1 cut(s)	419
ScrFI	CCNGG	4 cut(s)	60, 273, 822, 1452
SfaNI	GCATC	2 cut(s)	726, 1266
SfcI	CTRYAG	2 cut(s)	617, 1294
SfuI	TTCGAA	1 cut(s)	1041
SgrAI	CRCCGGYG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	710
SpeI	ACTAGT	1 cut(s)	1114
Sse9I	AATT	7 cut(s)	10, 292, 566, 628, 748, 1215, 1397
SsiI	CCGC	9 cut(s)	363, 422, 486, 498, 965, 1061, 1258, 1279, 1351
SspI	AATATT	1 cut(s)	93
SspMI	CTAG	4 cut(s)	798, 986, 1065, 1115
StyD4I	CCNGG	4 cut(s)	58, 271, 820, 1450
StyI	CCWWGG	1 cut(s)	1223
TaaI	ACNGT	6 cut(s)	168, 176, 465, 654, 854, 1000
TaqI	TCGA	3 cut(s)	831, 1041, 1287
TaqII	GACCGA	1 cut(s)	596
TasI	AATT	7 cut(s)	10, 292, 566, 628, 748, 1215, 1397
TatI	WGTACW	1 cut(s)	1468
TauI	GCSGC	3 cut(s)	365, 968, 1064
TfiI	GAWTC	5 cut(s)	40, 100, 152, 232, 1048
Tru1I	TTAA	6 cut(s)	456, 839, 885, 1266, 1314, 1371
Tru9I	TTAA	6 cut(s)	456, 839, 885, 1266, 1314, 1371
TscAI	CASTG	2 cut(s)	181, 859
TseFI	GTSAC	2 cut(s)	46, 955
TseI	GCWGC	2 cut(s)	140, 962
Tsp45I	GTSAC	2 cut(s)	46, 955
TspGWI	ACGGA	3 cut(s)	274, 570, 770
TspRI	CASTG	2 cut(s)	181, 859
Tth111I	GACNNNGTC	1 cut(s)	938
VpaK11BI	GGWCC	1 cut(s)	419
VspI	ATTAAT	1 cut(s)	1371
XapI	RAATTY	1 cut(s)	1397
XcmI	CCANNNNNNNNNTGG	2 cut(s)	79, 822
XmiI	GTMKAC	1 cut(s)	1287
XmnI	GAANNNNTTC	5 cut(s)	122, 242, 762, 816, 1047
XspI	CTAG	4 cut(s)	798, 986, 1065, 1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.