AT3G45100

PIGA (GPI anchor biosynthesis)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
16504314 .. 16507415
3102 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G45100.2

Sequence Viewer

Length: 1344 bp
ATGGCGGAACCACCAAAGCTTAGGGTTTTAATGGTCTCTGATTTCTTCTTCCCAAACTTTGGTGGTGTCGAGAATCACATCTATTACCTCTCTCAATGCTTGTTAAAGCTCGGTCACAAGGTGGTTGTTATGACACATGCTTATGGGAACCGGTCTGGAGTTAGATACATGACTGGTGGACTCAAAGTCTATTATGTACCTTGGAGACCTTTTGTTATGCAGACTACATTTCCGACGGTTTATGGAACACTTCCCATTGTGAGGACTATACTTAGACGCGAGAAAATCACGGTAGTTCATGGACATCAAGCTTTCTCTACGCTTTGTCATGAAGCTTTAATGCATGCCAGGACAATGGGCTATAAAGTTGTGTTCACAGATCATTCCTTGTACGGTTTTGCTGATGTTGGTAGCATCCATATGAACAAGGTTTTACAGTTTAGTTTAGCAGATATTGATCAGGCGATTTGTGTTTCACACACGAGCAAGGAGAATACGGTTCTAAGGTCTGGATTGTCCCCAGCAAAGGTTTTTATGATACCGAATGCTGTTGATACTGCTATGTTCAAGCCCGCTTCTGTTCGACCCAGTACTGATATTATTACTATAGTTGTCATAAGTAGATTGGTTTATCGAAAAGGTGCGGATTTGCTCGTGGAAGTCATTCCAGAAGTATGCCGTTTATACCCAAATGTTCGTTTTGTAGTTGGAGGGGATGGACCAAAACATGTGCGACTCGAGGAAATGAGAGAGAAGCATTCTCTACAAGATAGAGTCGAAATGCTAGGTGCAGTTCCGCATTCTCGTGTGCGCTCTGTTTTGGTTACCGGTCATATTTTCTTAAACAGTTCTTTAACAGAAGCCTTCTGCATAGCTATATTAGAGGCGGCTAGTTGCGGATTATTAACTGTCAGCACTCGTGTTGGAGGTGTCCCAGAGGTCTTACCAGATGACATGGTTGTACTTGCTGAACCAGATCCGGATGATATGGTACGAGCTATTGAGAAGGCAATATCAATACTTCCAACTATTAACCCCGAGGAGATGCACAATCGAATGAAGAAGCTCTACAGTTGGCAAGATGTTGCTAAAAGAACCGAGATTGTGTATGACCGTGCCTTGAAGTGTTCAAATAGGAGTCTTCTAGAACGTCTAATGCGGTTCCTCTCGTGTGGAGCTTGGGCAGGGAAGCTATTTTGTATGGTTATGATCCTCGATTACTTGCTTTGGCGGTTACTTCAGTTACTGCAGCCTGATGAAGATATCGAGGAGGCACCCGATATCTGTCTTTGCCATCACCGAGGGGTTGAGGTATCTGAGGGTCTAAGGAAGAAGATAAAGTGA

Protein Analysis

447

Amino Acids

50.42

Weight (kDa)

8.66

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_4 PF13439 20 - 187 1.9e-28 Glycosyltransferase Family 4
Glyco_trans_4_4 PF13579 21 - 182 3.4e-13 Glycosyl transferase 4-like domain
PIGA PF08288 46 - 135 1.4e-42 PIGA (GPI anchor biosynthesis)
Glycos_transf_1 PF00534 199 - 340 2.1e-29 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 202 - 338 8.8e-26 Glycosyl transferases group 1
Glyco_trans_1_2 PF13524 228 - 336 4.1e-07 Glycosyl transferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1273
AccB7I CCANNNNNTGG 1 cut(s) 59
AccII CGCG 1 cut(s) 279
AccIII TCCGGA 1 cut(s) 979
AciI CCGC 8 cut(s) 5, 573, 644, 797, 887, 897, 1159, 1231
AclWI GGATC 2 cut(s) 971, 1204
AcuI CTGAAG 1 cut(s) 1223
AdeI CACNNNGTG 1 cut(s) 121
AfaI GTAC 5 cut(s) 198, 392, 592, 963, 993
AfiI CCNNNNNNNGG 3 cut(s) 59, 261, 526
AflIII ACRYGT 1 cut(s) 727
AgeI ACCGGT 2 cut(s) 150, 827
AgsI TTSAA 3 cut(s) 568, 1123, 1131
AhdI GACNNNNNGTC 1 cut(s) 185
AjnI CCWGG 1 cut(s) 347
AluBI AGCT 9 cut(s) 19, 109, 311, 335, 875, 998, 1066, 1178, 1192
AluI AGCT 9 cut(s) 19, 109, 311, 335, 875, 998, 1066, 1178, 1192
Alw26I GTCTC 2 cut(s) 40, 199
AlwI GGATC 2 cut(s) 971, 1204
AlwNI CAGNNNCTG 1 cut(s) 1246
Ama87I CYCGRG 2 cut(s) 737, 1037
Aor13HI TCCGGA 1 cut(s) 979
ApeKI GCWGC 1 cut(s) 1249
AsiGI ACCGGT 2 cut(s) 150, 827
Asp700I GAANNNNTTC 1 cut(s) 663
AspLEI GCGC 1 cut(s) 813
AspS9I GGNCC 1 cut(s) 719
AsuHPI GGTGA 1 cut(s) 1289
AvaI CYCGRG 2 cut(s) 737, 1037
AvaII GGWCC 1 cut(s) 719
BanI GGYRCC 1 cut(s) 1273
BarI GAAGNNNNNNTAC 2 cut(s) 1052, 1084
BauI CACGAG 5 cut(s) 481, 653, 804, 918, 1168
BbsI GAAGAC 1 cut(s) 1133
BbvI GCAGC 1 cut(s) 1261
BccI CCATC 2 cut(s) 710, 1302
BceAI ACGGC 1 cut(s) 663
BciT130I CCWGG 1 cut(s) 349
BclI TGATCA 1 cut(s) 457
BcoDI GTCTC 2 cut(s) 40, 199
BfaI CTAG 3 cut(s) 785, 891, 1145
BfmI CTRYAG 3 cut(s) 606, 1069, 1247
BisI GCNGC 2 cut(s) 888, 1250
BlsI GCNGC 2 cut(s) 889, 1251
BmcAI AGTACT 1 cut(s) 592
Bme1390I CCNGG 1 cut(s) 349
Bme18I GGWCC 1 cut(s) 719
BmeRI GACNNNNNGTC 1 cut(s) 185
BmeT110I CYCGRG 2 cut(s) 737, 1037
BmgT120I GGNCC 1 cut(s) 719
BmiI GGNNCC 4 cut(s) 9, 149, 1163, 1275
BmrFI CCNGG 1 cut(s) 349
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 2 cut(s) 423, 1035
BmuI ACTGGG 1 cut(s) 582
BpiI GAAGAC 1 cut(s) 1133
BpmI CTGGAG 1 cut(s) 177
Bpu10I CCTNAGC 1 cut(s) 20
BsaBI GATNNNNATC 1 cut(s) 456
BsaI GGTCTC 2 cut(s) 40, 199
BsaJI CCNNGG 3 cut(s) 200, 1038, 1300
BsaWI WCCGGW 3 cut(s) 150, 827, 979
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 261, 526
Bse118I RCCGGY 2 cut(s) 150, 827
Bse1I ACTGG 2 cut(s) 178, 588
Bse8I GATNNNNATC 1 cut(s) 456
BseAI TCCGGA 1 cut(s) 979
BseBI CCWGG 1 cut(s) 349
BseDI CCNNGG 3 cut(s) 200, 1038, 1300
BseGI GGATG 3 cut(s) 414, 721, 988
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 3 cut(s) 59, 261, 526
BseMII CTCAG 1 cut(s) 1308
BseNI ACTGG 2 cut(s) 178, 588
BseRI GAGGAG 2 cut(s) 1055, 1283
BseXI GCAGC 1 cut(s) 1261
BseYI CCCAGC 1 cut(s) 520
BsgI GTGCAG 1 cut(s) 810
Bsh1236I CGCG 1 cut(s) 279
BshNI GGYRCC 1 cut(s) 1273
BshTI ACCGGT 2 cut(s) 150, 827
BsiHKCI CYCGRG 2 cut(s) 737, 1037
BsiSI CCGG 3 cut(s) 151, 828, 980
BslFI GGGAC 2 cut(s) 502, 917
BslI CCNNNNNNNGG 3 cut(s) 59, 261, 526
BsmAI GTCTC 2 cut(s) 40, 199
BsmFI GGGAC 2 cut(s) 502, 917
BsmI GAATGC 3 cut(s) 550, 757, 799
Bso31I GGTCTC 2 cut(s) 40, 199
BsoBI CYCGRG 2 cut(s) 737, 1037
Bsp13I TCCGGA 1 cut(s) 979
Bsp143I GATC 4 cut(s) 379, 457, 976, 1209
BspACI CCGC 8 cut(s) 5, 573, 644, 797, 887, 897, 1159, 1231
BspCNI CTCAG 1 cut(s) 1309
BspEI TCCGGA 1 cut(s) 979
BspFNI CGCG 1 cut(s) 279
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 4 cut(s) 9, 149, 1163, 1275
BspMAI CTGCAG 1 cut(s) 1251
BspPI GGATC 2 cut(s) 971, 1204
BspT107I GGYRCC 1 cut(s) 1273
BspTNI GGTCTC 2 cut(s) 40, 199
BsrFI RCCGGY 2 cut(s) 150, 827
BsrI ACTGG 2 cut(s) 178, 588
BssAI RCCGGY 2 cut(s) 150, 827
BssECI CCNNGG 3 cut(s) 200, 1038, 1300
BssMI GATC 4 cut(s) 379, 457, 976, 1209
BssSI CACGAG 5 cut(s) 481, 653, 804, 918, 1168
BssT1I CCWWGG 1 cut(s) 200
Bst2BI CACGAG 5 cut(s) 481, 653, 804, 918, 1168
Bst2UI CCWGG 1 cut(s) 349
Bst4CI ACNGT 9 cut(s) 238, 292, 395, 438, 499, 848, 910, 1073, 1115
BstC8I GCNNGC 2 cut(s) 345, 573
BstDEI CTNAG 5 cut(s) 20, 272, 503, 1317, 1325
BstEII GGTNACC 1 cut(s) 823
BstF5I GGATG 3 cut(s) 414, 721, 988
BstFNI CGCG 1 cut(s) 279
BstHHI GCGC 1 cut(s) 813
BstKTI GATC 4 cut(s) 382, 460, 979, 1212
BstMAI GTCTC 2 cut(s) 40, 199
BstMBI GATC 4 cut(s) 379, 457, 976, 1209
BstNI CCWGG 1 cut(s) 349
BstNSI RCATGY 3 cut(s) 140, 347, 731
BstPI GGTNACC 1 cut(s) 823
BstSCI CCNGG 1 cut(s) 347
BstSFI CTRYAG 3 cut(s) 606, 1069, 1247
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 1261
BstV2I GAAGAC 1 cut(s) 1133
BstX2I RGATCY 1 cut(s) 976
BstXI CCANNNNNNTGG 1 cut(s) 355
BstYI RGATCY 1 cut(s) 976
BtsCI GGATG 3 cut(s) 414, 721, 988
Cac8I GCNNGC 2 cut(s) 345, 573
CaiI CAGNNNCTG 1 cut(s) 1246
CciI TCATGA 1 cut(s) 328
CfoI GCGC 1 cut(s) 813
Cfr10I RCCGGY 2 cut(s) 150, 827
Cfr13I GGNCC 1 cut(s) 719
CseI GACGC 1 cut(s) 285
Csp6I GTAC 5 cut(s) 197, 391, 591, 962, 992
CspAI ACCGGT 2 cut(s) 150, 827
CviAII CATG 7 cut(s) 137, 169, 299, 329, 344, 728, 955
CviQI GTAC 5 cut(s) 197, 391, 591, 962, 992
DdeI CTNAG 5 cut(s) 20, 272, 503, 1317, 1325
DpnI GATC 4 cut(s) 381, 459, 978, 1211
DpnII GATC 4 cut(s) 379, 457, 976, 1209
DraIII CACNNNGTG 1 cut(s) 121
DriI GACNNNNNGTC 1 cut(s) 185
Eam1105I GACNNNNNGTC 1 cut(s) 185
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 200
Eco31I GGTCTC 2 cut(s) 40, 199
Eco32I GATATC 2 cut(s) 1264, 1282
Eco47I GGWCC 1 cut(s) 719
Eco57I CTGAAG 1 cut(s) 1223
Eco88I CYCGRG 2 cut(s) 737, 1037
Eco91I GGTNACC 1 cut(s) 823
EcoO65I GGTNACC 1 cut(s) 823
EcoRII CCWGG 1 cut(s) 347
EcoRV GATATC 2 cut(s) 1264, 1282
EcoT14I CCWWGG 1 cut(s) 200
EcoT22I ATGCAT 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 7 cut(s) 140, 172, 302, 332, 347, 731, 958
FaqI GGGAC 2 cut(s) 502, 917
FatI CATG 7 cut(s) 136, 168, 298, 328, 343, 727, 954
FauI CCCGC 1 cut(s) 580
FauNDI CATATG 1 cut(s) 420
FbaI TGATCA 1 cut(s) 457
Fnu4HI GCNGC 2 cut(s) 888, 1250
FokI GGATG 3 cut(s) 401, 728, 995
Fsp4HI GCNGC 2 cut(s) 888, 1250
FspBI CTAG 3 cut(s) 785, 891, 1145
GlaI GCGC 1 cut(s) 812
GluI GCNGC 2 cut(s) 888, 1250
GsaI CCCAGC 1 cut(s) 524
GsuI CTGGAG 1 cut(s) 177
HapII CCGG 3 cut(s) 151, 828, 980
HgaI GACGC 1 cut(s) 285
HhaI GCGC 1 cut(s) 813
Hin1II CATG 7 cut(s) 140, 172, 302, 332, 347, 731, 958
Hin6I GCGC 1 cut(s) 811
HinP1I GCGC 1 cut(s) 811
HindIII AAGCTT 3 cut(s) 17, 309, 333
HinfI GANTC 5 cut(s) 73, 180, 735, 774, 1138
HpaII CCGG 3 cut(s) 151, 828, 980
HphI GGTGA 1 cut(s) 1289
Hpy166II GTNNAC 2 cut(s) 179, 375
Hpy188I TCNGA 3 cut(s) 40, 234, 1318
Hpy188III TCNNGA 7 cut(s) 70, 156, 329, 510, 668, 980, 1145
Hpy8I GTNNAC 2 cut(s) 179, 375
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 2 cut(s) 874, 1000
HpyCH4III ACNGT 9 cut(s) 238, 292, 395, 438, 499, 848, 910, 1073, 1115
HpyCH4IV ACGT 1 cut(s) 1150
HpyCH4V TGCA 6 cut(s) 220, 343, 791, 870, 1048, 1249
HpyF3I CTNAG 5 cut(s) 20, 272, 503, 1317, 1325
HpySE526I ACGT 1 cut(s) 1150
Hsp92II CATG 7 cut(s) 140, 172, 302, 332, 347, 731, 958
HspAI GCGC 1 cut(s) 811
Kpn2I TCCGGA 1 cut(s) 979
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 4 cut(s) 379, 457, 976, 1209
LmnI GCTCC 1 cut(s) 1175
Lsp1109I GCAGC 1 cut(s) 1261
LweI GCATC 2 cut(s) 423, 1035
MaeI CTAG 3 cut(s) 785, 891, 1145
MaeII ACGT 1 cut(s) 1150
MaeIII GTNAC 4 cut(s) 113, 823, 1233, 1242
MalI GATC 4 cut(s) 381, 459, 978, 1211
MboI GATC 4 cut(s) 379, 457, 976, 1209
MboII GAAGA 6 cut(s) 37, 40, 1072, 1133, 1271, 1342
MflI RGATCY 1 cut(s) 976
MlyI GAGTC 4 cut(s) 174, 729, 783, 1147
MmeI TCCRAC 4 cut(s) 257, 688, 904, 1049
Mph1103I ATGCAT 1 cut(s) 345
MroI TCCGGA 1 cut(s) 979
MroXI GAANNNNTTC 1 cut(s) 663
MseI TTAA 7 cut(s) 29, 104, 338, 842, 854, 905, 1032
MslI CAYNNNNRTG 3 cut(s) 141, 419, 804
MspI CCGG 3 cut(s) 151, 828, 980
MspR9I CCNGG 1 cut(s) 349
Mva1269I GAATGC 3 cut(s) 550, 757, 799
MvaI CCWGG 1 cut(s) 349
MvnI CGCG 1 cut(s) 279
NdeI CATATG 1 cut(s) 420
NdeII GATC 4 cut(s) 379, 457, 976, 1209
NlaIII CATG 7 cut(s) 140, 172, 302, 332, 347, 731, 958
NlaIV GGNNCC 4 cut(s) 9, 149, 1163, 1275
NmuCI GTSAC 1 cut(s) 113
NsiI ATGCAT 1 cut(s) 345
NspI RCATGY 3 cut(s) 140, 347, 731
PaeI GCATGC 1 cut(s) 347
PaeR7I CTCGAG 1 cut(s) 737
PagI TCATGA 1 cut(s) 328
PciI ACATGT 1 cut(s) 727
PctI GAATGC 3 cut(s) 550, 757, 799
PdmI GAANNNNTTC 1 cut(s) 663
PfeI GAWTC 1 cut(s) 73
PflMI CCANNNNNTGG 1 cut(s) 59
PinAI ACCGGT 2 cut(s) 150, 827
PkrI GCNGC 2 cut(s) 889, 1251
PleI GAGTC 4 cut(s) 174, 729, 782, 1146
PpsI GAGTC 4 cut(s) 174, 729, 782, 1146
PscI ACATGT 1 cut(s) 727
Psp6I CCWGG 1 cut(s) 347
PspEI GGTNACC 1 cut(s) 823
PspFI CCCAGC 1 cut(s) 520
PspGI CCWGG 1 cut(s) 347
PspN4I GGNNCC 4 cut(s) 9, 149, 1163, 1275
PspPI GGNCC 1 cut(s) 719
PspXI VCTCGAGB 1 cut(s) 737
PstI CTGCAG 1 cut(s) 1251
PstNI CAGNNNCTG 1 cut(s) 1246
PsuI RGATCY 1 cut(s) 976
RsaI GTAC 5 cut(s) 198, 392, 592, 963, 993
RsaNI GTAC 5 cut(s) 197, 391, 591, 962, 992
RseI CAYNNNNRTG 3 cut(s) 141, 419, 804
SaqAI TTAA 7 cut(s) 29, 104, 338, 842, 854, 905, 1032
SatI GCNGC 2 cut(s) 888, 1250
Sau3AI GATC 4 cut(s) 379, 457, 976, 1209
Sau96I GGNCC 1 cut(s) 719
ScaI AGTACT 1 cut(s) 592
SchI GAGTC 4 cut(s) 174, 729, 783, 1147
ScrFI CCNGG 1 cut(s) 349
SfaNI GCATC 2 cut(s) 423, 1035
SfcI CTRYAG 3 cut(s) 606, 1069, 1247
Sfr274I CTCGAG 1 cut(s) 737
SinI GGWCC 1 cut(s) 719
SlaI CTCGAG 1 cut(s) 737
SmiMI CAYNNNNRTG 3 cut(s) 141, 419, 804
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
SphI GCATGC 1 cut(s) 347
SsiI CCGC 8 cut(s) 5, 573, 644, 797, 887, 897, 1159, 1231
SspMI CTAG 3 cut(s) 785, 891, 1145
StyD4I CCNGG 1 cut(s) 347
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 9 cut(s) 238, 292, 395, 438, 499, 848, 910, 1073, 1115
TaiI ACGT 1 cut(s) 1153
TaqI TCGA 8 cut(s) 69, 583, 634, 738, 777, 1054, 1215, 1266
TaqII GACCGA 1 cut(s) 101
TatI WGTACW 2 cut(s) 590, 961
TauI GCSGC 1 cut(s) 890
TfiI GAWTC 1 cut(s) 73
Tru1I TTAA 7 cut(s) 29, 104, 338, 842, 854, 905, 1032
Tru9I TTAA 7 cut(s) 29, 104, 338, 842, 854, 905, 1032
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 1 cut(s) 1249
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 5 cut(s) 287, 345, 437, 1073, 1272
Van91I CCANNNNNTGG 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 719
XbaI TCTAGA 1 cut(s) 1144
XceI RCATGY 3 cut(s) 140, 347, 731
XhoI CTCGAG 1 cut(s) 737
XmnI GAANNNNTTC 1 cut(s) 663
XspI CTAG 3 cut(s) 785, 891, 1145
ZrmI AGTACT 1 cut(s) 592
Zsp2I ATGCAT 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.