Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006803

Physical Location & Seq

Genomic Coordinates Forward (+)

630065 .. 634044

Gene Structure 3980 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1006700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGTCTCTGATTTTTTCTATCCCAATTTCGGTGGTGTGGAGAATCACATCTATTATCTCTCACAATGCCTTCTCAAGCTCGGTCACAAGGTGGTGGTCACTCATGCCTACAACAATCGTTCTGGTGTGAGATATATGACAGGTGGTCTGAAAGTGTATTATGTACCATGGAAACCATTTCTCATGCAGAATACTTTTCCCACCTTTTATGGGACACTTCCAATTGTAAGGACTATCCTTATTCGAGAAAAAATATCGCTGGTCCACGGACATCAAGCTTTCTCAACTCTTTGCCATGAGGCTTTGATGCACGCACGCACAATGGGGTACAAAGTCGTATTTACTGATCATTCACTCTATGGTTTTGCTGATGCCGGAAGCATACACATGAACAAGGTATTGCAGTTTACTTTGGCAGAAGTAAGTCAGGCCATTTGTGTTTCTCATACAAGCAAGGAAAACACAGTGCTAAGGTCAGGTTTGCCACCTGAAAAGGTCTTTGTAATACCTAATGCAGTTGACACAGCTATGTTCAAGCCTGCACCCGAACGACTGAGTAGTCATGAAATTGTAATTGTTGTTATAAGTAGATTGGTTTACCGAAAGGGTGCAGATCTACTTGTTGAAGTAATTCCAGAAGTATGCCGTTTATATCCCAATGTTCGTTTCATTGTTGGAGGAGATGGACCTAAACGTGTGAGGTTGGAAGAAATGAGGGAAAAACATTCTCTTCAAGATCGAGTTGAAATGCTAGGTGCCGTGCAACACTCTAAAGTACGATCCGTCCTAATTTCTGGCCATATATTCTTAAACAGTTCTTTAACAGAAGCTTTTTGCATAGCGATCTTAGAGGCTGCCAGTTGTGGATTATTAACAGTCAGTACACGTGTAGGAGGTGTCCCAGAGGTACTTCCAGATGACATGGTTGTACTTGCAAAACCAGATCCTAGTGATATGGTTCAAGCAATAGAGAAGGCAATATCTATACTTCCTACAATCGACCCACAAGAAATGCACAATCGTATGAAGGAACTGTACAATTGGCATGATGTGGCGAAACGGACAGAAATTGTTTATGACCGTGCGTTGAAATGCTCAAATCAAAATCTTTTACAGCGACTCTCACGATACCTCTCGTGTGGAGCTTGGGCTGGAAAGATTTTCTGCTTGGTTATGATCATTGACTTTCTGTTATGGCATCTGTTGCAACTATGGAAGCCTGAAGAGGATATTGAAGAGGTGCCCGATTTCGTTCTGTCCCATGATCAAGATGAAGGGATCTCGCTGGACAATGCGAACCACAGCTCGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000506 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009893 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016254 GO:0016740 GO:0016757 GO:0016758 GO:0017176 GO:0019222 GO:0019538 GO:0019637 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0051704 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Glycos_transf_1 PIGA

Protein Analysis

438

Amino Acids

49.39

Weight (kDa)

6.83

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_4	PF13439	10 - 176	3.7e-27	Glycosyltransferase Family 4
Glyco_trans_4_4	PF13579	11 - 171	9.4e-12	Glycosyl transferase 4-like domain
PIGA	PF08288	35 - 124	3.8e-43	PIGA (GPI anchor biosynthesis)
Glycos_transf_1	PF00534	184 - 329	7.1e-29	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	191 - 327	4.6e-26	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45100 AT3G45100 AT3G45100
fragaria_vesca	FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430
malus_domestica	MD11G1006700.v1.1 MD11G1007700.v1.1
prunus_persica	Prupe.6G004900_v2.0.a1 Prupe.6G143200_v2.0.a1
pyrus_communis	pycom11g00520
rosa_chinensis	RchiOBHm_Chr5g0083231
rosa_laevigata	RLG00000037021
rosa_multiflora	Rmu_ssc0000026.1_g000010
rosa_roxburghii	Rroxscaffold_1G00001260
rosa_rugosa	Rorug05G0483600
rosa_samantha	Rh5AG532900 Rh5BG560100 Rh5CG582800 Rh5DG569400
rosa_wichuraiana	Rw5G050000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
AasI	GACNNNNNNGTC	1 cut(s)	558
AccB1I	GGYRCC	2 cut(s)	755, 1240
AclWI	GGATC	3 cut(s)	774, 938, 1286
AcoI	YGGCCR	1 cut(s)	796
AcuI	CTGAAG	1 cut(s)	1242
AcvI	CACGTG	1 cut(s)	887
AdeI	CACNNNGTG	1 cut(s)	91
AfaI	GTAC	7 cut(s)	165, 329, 777, 883, 909, 930, 1037
AfiI	CCNNNNNNNGG	2 cut(s)	29, 210
AflIII	ACRYGT	3 cut(s)	694, 884, 886
AgsI	TTSAA	7 cut(s)	535, 626, 734, 746, 962, 1090, 1235
AhdI	GACNNNNNGTC	1 cut(s)	144
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AluBI	AGCT	6 cut(s)	79, 278, 527, 830, 1145, 1305
AluI	AGCT	6 cut(s)	79, 278, 527, 830, 1145, 1305
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	3 cut(s)	774, 938, 1286
Ama87I	CYCGRG	1 cut(s)	1306
AoxI	GGCC	2 cut(s)	429, 796
ApeKI	GCWGC	1 cut(s)	854
Asp700I	GAANNNNTTC	1 cut(s)	630
AspS9I	GGNCC	2 cut(s)	262, 686
AvaI	CYCGRG	1 cut(s)	1306
AvaII	GGWCC	2 cut(s)	262, 686
BaeGI	GKGCMC	1 cut(s)	1245
BalI	TGGCCA	1 cut(s)	798
BanI	GGYRCC	2 cut(s)	755, 1240
BarI	GAAGNNNNNNTAC	2 cut(s)	1019, 1051
BauI	CACGAG	1 cut(s)	1135
BbrPI	CACGTG	1 cut(s)	887
BbvI	GCAGC	1 cut(s)	841
BccI	CCATC	1 cut(s)	677
BceAI	ACGGC	2 cut(s)	630, 743
BclI	TGATCA	3 cut(s)	346, 1176, 1264
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	2 cut(s)	752, 948
BglII	AGATCT	1 cut(s)	613
BisI	GCNGC	1 cut(s)	855
BlsI	GCNGC	1 cut(s)	856
Bme18I	GGWCC	2 cut(s)	262, 686
BmeRI	GACNNNNNGTC	1 cut(s)	144
BmeT110I	CYCGRG	1 cut(s)	1306
BmgT120I	GGNCC	2 cut(s)	262, 686
BmiI	GGNNCC	2 cut(s)	757, 1242
BmsI	GCATC	3 cut(s)	297, 361, 1207
Bpu10I	CCTNAGC	1 cut(s)	470
BpuEI	CTTGAG	1 cut(s)	59
BsaAI	YACGTR	1 cut(s)	887
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	167, 265
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 210
Bse1I	ACTGG	1 cut(s)	858
BseDI	CCNNGG	2 cut(s)	167, 265
BseLI	CCNNNNNNNGG	2 cut(s)	29, 210
BseMII	CTCAG	1 cut(s)	545
BseNI	ACTGG	1 cut(s)	858
BseRI	GAGGAG	1 cut(s)	693
BseSI	GKGCMC	1 cut(s)	1245
BseXI	GCAGC	1 cut(s)	841
BsgI	GTGCAG	2 cut(s)	525, 630
BshFI	GGCC	2 cut(s)	431, 798
BshNI	GGYRCC	2 cut(s)	755, 1240
BsiHKCI	CYCGRG	1 cut(s)	1306
BsiSI	CCGG	1 cut(s)	375
BslFI	GGGAC	3 cut(s)	226, 884, 1243
BslI	CCNNNNNNNGG	2 cut(s)	29, 210
BsmAI	GTCTC	1 cut(s)	10
BsmFI	GGGAC	3 cut(s)	226, 884, 1243
BsnI	GGCC	2 cut(s)	431, 798
Bso31I	GGTCTC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	1306
Bsp1286I	GDGCHC	1 cut(s)	1245
Bsp1407I	TGTACA	1 cut(s)	1035
Bsp143I	GATC	9 cut(s)	346, 613, 736, 779, 843, 943, 1176, 1264, 1278
Bsp19I	CCATGG	1 cut(s)	167
BspANI	GGCC	2 cut(s)	431, 798
BspCNI	CTCAG	1 cut(s)	546
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	2 cut(s)	757, 1242
BspPI	GGATC	3 cut(s)	774, 938, 1286
BspT107I	GGYRCC	2 cut(s)	755, 1240
BspTNI	GGTCTC	1 cut(s)	10
BsrGI	TGTACA	1 cut(s)	1035
BsrI	ACTGG	1 cut(s)	858
BssECI	CCNNGG	2 cut(s)	167, 265
BssMI	GATC	9 cut(s)	346, 613, 736, 779, 843, 943, 1176, 1264, 1278
BssSI	CACGAG	1 cut(s)	1135
BssT1I	CCWWGG	1 cut(s)	167
Bst2BI	CACGAG	1 cut(s)	1135
Bst4CI	ACNGT	5 cut(s)	466, 815, 877, 1035, 1082
Bst6I	CTCTTC	3 cut(s)	735, 1218, 1230
BstAPI	GCANNNNNTGC	1 cut(s)	1204
BstAUI	TGTACA	1 cut(s)	1035
BstBAI	YACGTR	1 cut(s)	887
BstC8I	GCNNGC	3 cut(s)	312, 316, 540
BstDEI	CTNAG	3 cut(s)	470, 554, 847
BstDSI	CCRYGG	2 cut(s)	167, 265
BstKTI	GATC	9 cut(s)	349, 616, 739, 782, 846, 946, 1179, 1267, 1281
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	9 cut(s)	346, 613, 736, 779, 843, 943, 1176, 1264, 1278
BstMWI	GCNNNNNNNGC	1 cut(s)	1204
BstSLI	GKGCMC	1 cut(s)	1245
BstV1I	GCAGC	1 cut(s)	841
BstX2I	RGATCY	3 cut(s)	613, 943, 1278
BstYI	RGATCY	3 cut(s)	613, 943, 1278
BsuRI	GGCC	2 cut(s)	431, 798
BtgI	CCRYGG	2 cut(s)	167, 265
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	3 cut(s)	312, 316, 540
CciI	TCATGA	1 cut(s)	562
Cfr13I	GGNCC	2 cut(s)	262, 686
Csp6I	GTAC	7 cut(s)	164, 328, 776, 882, 908, 929, 1036
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	9 cut(s)	104, 168, 184, 296, 388, 563, 922, 1046, 1262
CviQI	GTAC	7 cut(s)	164, 328, 776, 882, 908, 929, 1036
DdeI	CTNAG	3 cut(s)	470, 554, 847
DpnI	GATC	9 cut(s)	348, 615, 738, 781, 845, 945, 1178, 1266, 1280
DpnII	GATC	9 cut(s)	346, 613, 736, 779, 843, 943, 1176, 1264, 1278
DraIII	CACNNNGTG	1 cut(s)	91
DrdI	GACNNNNNNGTC	1 cut(s)	558
DriI	GACNNNNNGTC	1 cut(s)	144
DseDI	GACNNNNNNGTC	1 cut(s)	558
EaeI	YGGCCR	1 cut(s)	796
Eam1104I	CTCTTC	3 cut(s)	735, 1218, 1230
Eam1105I	GACNNNNNGTC	1 cut(s)	144
EarI	CTCTTC	3 cut(s)	735, 1218, 1230
Eco130I	CCWWGG	1 cut(s)	167
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	2 cut(s)	262, 686
Eco57I	CTGAAG	1 cut(s)	1242
Eco72I	CACGTG	1 cut(s)	887
Eco88I	CYCGRG	1 cut(s)	1306
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	9 cut(s)	107, 171, 187, 299, 391, 566, 925, 1049, 1265
FaqI	GGGAC	3 cut(s)	226, 884, 1243
FatI	CATG	9 cut(s)	103, 167, 183, 295, 387, 562, 921, 1045, 1261
FbaI	TGATCA	3 cut(s)	346, 1176, 1264
Fnu4HI	GCNGC	1 cut(s)	855
Fsp4HI	GCNGC	1 cut(s)	855
FspBI	CTAG	2 cut(s)	752, 948
GluI	GCNGC	1 cut(s)	855
HaeIII	GGCC	2 cut(s)	431, 798
HapII	CCGG	1 cut(s)	375
Hin1II	CATG	9 cut(s)	107, 171, 187, 299, 391, 566, 925, 1049, 1265
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	2 cut(s)	276, 828
HinfI	GANTC	2 cut(s)	43, 1119
HpaII	CCGG	1 cut(s)	375
Hpy166II	GTNNAC	5 cut(s)	265, 408, 520, 598, 884
Hpy188I	TCNGA	2 cut(s)	10, 150
Hpy188III	TCNNGA	8 cut(s)	245, 563, 635, 734, 914, 1125, 1268, 1308
Hpy8I	GTNNAC	5 cut(s)	265, 408, 520, 598, 884
HpyAV	CCTTC	4 cut(s)	80, 967, 1021, 1268
HpyCH4III	ACNGT	5 cut(s)	466, 815, 877, 1035, 1082
HpyCH4IV	ACGT	2 cut(s)	694, 886
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1204
HpyF3I	CTNAG	3 cut(s)	470, 554, 847
HpySE526I	ACGT	2 cut(s)	694, 886
Hsp92II	CATG	9 cut(s)	107, 171, 187, 299, 391, 566, 925, 1049, 1265
Ksp22I	TGATCA	3 cut(s)	346, 1176, 1264
Kzo9I	GATC	9 cut(s)	346, 613, 736, 779, 843, 943, 1176, 1264, 1278
LmnI	GCTCC	1 cut(s)	1142
Lsp1109I	GCAGC	1 cut(s)	841
LweI	GCATC	3 cut(s)	297, 361, 1207
MaeI	CTAG	2 cut(s)	752, 948
MaeII	ACGT	2 cut(s)	694, 886
MaeIII	GTNAC	2 cut(s)	83, 97
MalI	GATC	9 cut(s)	348, 615, 738, 781, 845, 945, 1178, 1266, 1280
MboI	GATC	9 cut(s)	346, 613, 736, 779, 843, 943, 1176, 1264, 1278
MboII	GAAGA	4 cut(s)	719, 722, 1235, 1247
MfeI	CAATTG	2 cut(s)	222, 1039
MflI	RGATCY	3 cut(s)	613, 943, 1278
MhlI	GDGCHC	1 cut(s)	1245
MlsI	TGGCCA	1 cut(s)	798
MluCI	AATT	8 cut(s)	25, 222, 567, 573, 630, 789, 1039, 1068
MluNI	TGGCCA	1 cut(s)	798
MlyI	GAGTC	1 cut(s)	1113
MmeI	TCCRAC	2 cut(s)	655, 684
Mox20I	TGGCCA	1 cut(s)	798
MroXI	GAANNNNTTC	1 cut(s)	630
MscI	TGGCCA	1 cut(s)	798
MseI	TTAA	3 cut(s)	809, 821, 872
MslI	CAYNNNNRTG	2 cut(s)	386, 527
Msp20I	TGGCCA	1 cut(s)	798
MspI	CCGG	1 cut(s)	375
MunI	CAATTG	2 cut(s)	222, 1039
MwoI	GCNNNNNNNGC	1 cut(s)	1204
NcoI	CCATGG	1 cut(s)	167
NdeII	GATC	9 cut(s)	346, 613, 736, 779, 843, 943, 1176, 1264, 1278
NlaIII	CATG	9 cut(s)	107, 171, 187, 299, 391, 566, 925, 1049, 1265
NlaIV	GGNNCC	2 cut(s)	757, 1242
NmuCI	GTSAC	2 cut(s)	83, 97
PaeR7I	CTCGAG	1 cut(s)	1306
PagI	TCATGA	1 cut(s)	562
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	856
PleI	GAGTC	1 cut(s)	1113
PmaCI	CACGTG	1 cut(s)	887
PmlI	CACGTG	1 cut(s)	887
PpsI	GAGTC	1 cut(s)	1113
Ppu21I	YACGTR	1 cut(s)	887
PsiI	TTATAA	1 cut(s)	584
PspCI	CACGTG	1 cut(s)	887
PspN4I	GGNNCC	2 cut(s)	757, 1242
PspPI	GGNCC	2 cut(s)	262, 686
PsuI	RGATCY	3 cut(s)	613, 943, 1278
RsaI	GTAC	7 cut(s)	165, 329, 777, 883, 909, 930, 1037
RsaNI	GTAC	7 cut(s)	164, 328, 776, 882, 908, 929, 1036
RseI	CAYNNNNRTG	2 cut(s)	386, 527
SaqAI	TTAA	3 cut(s)	809, 821, 872
SatI	GCNGC	1 cut(s)	855
Sau3AI	GATC	9 cut(s)	346, 613, 736, 779, 843, 943, 1176, 1264, 1278
Sau96I	GGNCC	2 cut(s)	262, 686
SchI	GAGTC	1 cut(s)	1113
SduI	GDGCHC	1 cut(s)	1245
SfaNI	GCATC	3 cut(s)	297, 361, 1207
Sfr274I	CTCGAG	1 cut(s)	1306
SinI	GGWCC	2 cut(s)	262, 686
SlaI	CTCGAG	1 cut(s)	1306
SmiMI	CAYNNNNRTG	2 cut(s)	386, 527
SmlI	CTYRAG	2 cut(s)	74, 1306
SmoI	CTYRAG	2 cut(s)	74, 1306
Sse9I	AATT	8 cut(s)	25, 222, 567, 573, 630, 789, 1039, 1068
SspMI	CTAG	2 cut(s)	752, 948
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	5 cut(s)	466, 815, 877, 1035, 1082
TaiI	ACGT	2 cut(s)	697, 889
TaqI	TCGA	4 cut(s)	244, 739, 999, 1307
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	8 cut(s)	25, 222, 567, 573, 630, 789, 1039, 1068
TatI	WGTACW	3 cut(s)	881, 928, 1035
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	3 cut(s)	809, 821, 872
Tru9I	TTAA	3 cut(s)	809, 821, 872
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	2 cut(s)	83, 97
TseI	GCWGC	1 cut(s)	854
Tsp45I	GTSAC	2 cut(s)	83, 97
TspDTI	ATGAA	5 cut(s)	404, 579, 658, 1040, 1287
TspGWI	ACGGA	3 cut(s)	282, 772, 1075
TspRI	CASTG	1 cut(s)	471
VpaK11BI	GGWCC	2 cut(s)	262, 686
XhoI	CTCGAG	1 cut(s)	1306
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	2 cut(s)	752, 948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.