Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006803

Physical Location & Seq

Genomic Coordinates Reverse (-)

66529450 .. 66530674

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0483600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCACCTACATTACCAGAATCATTGAAGATGCTATGTCAGTGGGGTGAAGACAAATTCAGAGACTGGCGTACCATCAGCTTCCACATTGAACCTGAAGTCTTCGGATATTCTCGCAATACCTTTCTAATGGGATCAGATGTTCAGCGACTTGCAAGCATGAGGGAAGTTAGTGGAACTTGCATTGCTGTGTACCAAAGTGGGTCTGGGAATGGAACTGTTAGGGCCCAACACATTAGAGATAGGCTTGTAACTGCAAAACCAGGACAGATGTTCATGTTGCCATATAACTCGGGTGATCATTGGATGTTGACAATTGTTGATCCGGACCAAGGCACTGCCTATTTTTTGGATCCTCTGAAAAGACGCTTACCCACCGGAGATTGGATGTCTATAGTGGAAACTGCACTAGGTATGTATAATTCTGAAAGGAAGAGGAAAGGCCTAAGTTCAGTTATGTGGAAAAATTTGGCTGGCATTCCTCCCCAACCTAGCAACAAGGAGTGTGGGTACTTTATCATGCGATACATGAGGGATATTATTGAGGATAAAGACCTGTCATTATGTCCTGTAAAGTGGGAGAGGAGAGGTAGCAGCCACTATACCCAAGCAGACATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000506 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009893 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016254 GO:0016740 GO:0016757 GO:0016758 GO:0017176 GO:0019222 GO:0019538 GO:0019637 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0051704 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Glycos_transf_1 PIGA

Protein Analysis

207

Amino Acids

23.76

Weight (kDa)

8.32

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	93 - 185	1.7e-08	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45100 AT3G45100 AT3G45100
fragaria_vesca	FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430
malus_domestica	MD11G1006700.v1.1 MD11G1007700.v1.1
prunus_persica	Prupe.6G004900_v2.0.a1 Prupe.6G143200_v2.0.a1
pyrus_communis	pycom11g00520
rosa_chinensis	RchiOBHm_Chr5g0083231
rosa_laevigata	RLG00000037021
rosa_multiflora	Rmu_ssc0000026.1_g000010
rosa_roxburghii	Rroxscaffold_1G00001260
rosa_rugosa	Rorug05G0483600
rosa_samantha	Rh5AG532900 Rh5BG560100 Rh5CG582800 Rh5DG569400
rosa_wichuraiana	Rw5G050000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccIII	TCCGGA	1 cut(s)	325
AclWI	GGATC	4 cut(s)	142, 317, 347, 360
AcsI	RAATTY	2 cut(s)	56, 466
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	3 cut(s)	73, 194, 512
AfiI	CCNNNNNNNGG	2 cut(s)	332, 384
AgsI	TTSAA	2 cut(s)	28, 92
AjnI	CCWGG	1 cut(s)	262
AloI	GAACNNNNNNTCC	2 cut(s)	126, 158
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	4 cut(s)	142, 317, 347, 360
AlwNI	CAGNNNCTG	1 cut(s)	66
Ama87I	CYCGRG	1 cut(s)	292
Aor13HI	TCCGGA	1 cut(s)	325
AoxI	GGCC	2 cut(s)	225, 442
ApaI	GGGCCC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	594
ApoI	RAATTY	2 cut(s)	56, 466
AspS9I	GGNCC	3 cut(s)	225, 226, 328
AsuHPI	GGTGA	2 cut(s)	59, 308
AvaI	CYCGRG	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	328
BaeGI	GKGCMC	1 cut(s)	229
BaeI	ACNNNNGTAYC	2 cut(s)	55, 88
BamHI	GGATCC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	229
BbsI	GAAGAC	2 cut(s)	57, 94
BbvI	GCAGC	1 cut(s)	606
BccI	CCATC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	264
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	2 cut(s)	410, 492
BfmI	CTRYAG	1 cut(s)	393
BisI	GCNGC	1 cut(s)	595
BlsI	GCNGC	1 cut(s)	596
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	292
BmgT120I	GGNCC	3 cut(s)	225, 226, 328
BmiI	GGNNCC	3 cut(s)	6, 227, 354
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	21
BpiI	GAAGAC	2 cut(s)	57, 94
BsaJI	CCNNGG	1 cut(s)	331
BsaWI	WCCGGW	2 cut(s)	325, 377
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 384
Bse1I	ACTGG	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	183
BseAI	TCCGGA	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	2 cut(s)	312, 393
BseLI	CCNNNNNNNGG	2 cut(s)	332, 384
BseMI	GCAATG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	598
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	606
BsgI	GTGCAG	1 cut(s)	390
BshFI	GGCC	2 cut(s)	227, 444
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	292
BsiSI	CCGG	2 cut(s)	326, 378
BslI	CCNNNNNNNGG	2 cut(s)	332, 384
BsmAI	GTCTC	1 cut(s)	57
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	2 cut(s)	227, 444
BsoBI	CYCGRG	1 cut(s)	292
Bsp120I	GGGCCC	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp13I	TCCGGA	1 cut(s)	325
Bsp143I	GATC	4 cut(s)	134, 298, 322, 352
BspANI	GGCC	2 cut(s)	227, 444
BspEI	TCCGGA	1 cut(s)	325
BspLI	GGNNCC	3 cut(s)	6, 227, 354
BspPI	GGATC	4 cut(s)	142, 317, 347, 360
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	4 cut(s)	134, 298, 322, 352
BssT1I	CCWWGG	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	428
BstC8I	GCNNGC	2 cut(s)	157, 475
BstDEI	CTNAG	1 cut(s)	446
BstF5I	GGATG	2 cut(s)	312, 393
BstKTI	GATC	4 cut(s)	137, 301, 325, 355
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	4 cut(s)	134, 298, 322, 352
BstNI	CCWGG	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	393
BstSLI	GKGCMC	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	606
BstV2I	GAAGAC	2 cut(s)	57, 94
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	227, 444
BtsCI	GGATG	2 cut(s)	312, 393
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	2 cut(s)	47, 336
Cac8I	GCNNGC	2 cut(s)	157, 475
CaiI	CAGNNNCTG	1 cut(s)	66
Cfr13I	GGNCC	3 cut(s)	225, 226, 328
CseI	GACGC	1 cut(s)	375
Csp6I	GTAC	3 cut(s)	72, 193, 511
CspCI	CAANNNNNGTGG	2 cut(s)	487, 522
CviAII	CATG	4 cut(s)	160, 277, 520, 529
CviJI	RGCY	6 cut(s)	81, 227, 247, 444, 473, 597
CviKI_1	RGCY	6 cut(s)	81, 227, 247, 444, 473, 597
CviQI	GTAC	3 cut(s)	72, 193, 511
DdeI	CTNAG	1 cut(s)	446
DpnI	GATC	4 cut(s)	136, 300, 324, 354
DpnII	GATC	4 cut(s)	134, 298, 322, 352
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
Eco130I	CCWWGG	1 cut(s)	331
Eco147I	AGGCCT	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	292
EcoO109I	RGGNCCY	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	4 cut(s)	163, 280, 523, 532
FatI	CATG	4 cut(s)	159, 276, 519, 528
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	595
FokI	GGATG	2 cut(s)	319, 400
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	1 cut(s)	595
FspBI	CTAG	2 cut(s)	410, 492
GluI	GCNGC	1 cut(s)	595
HaeIII	GGCC	2 cut(s)	227, 444
HapII	CCGG	2 cut(s)	326, 378
HgaI	GACGC	1 cut(s)	375
Hin1II	CATG	4 cut(s)	163, 280, 523, 532
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	2 cut(s)	326, 378
HphI	GGTGA	2 cut(s)	59, 308
Hpy166II	GTNNAC	2 cut(s)	193, 312
Hpy188I	TCNGA	5 cut(s)	62, 107, 139, 360, 427
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	2 cut(s)	193, 312
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4V	TGCA	4 cut(s)	155, 183, 257, 407
HpyF3I	CTNAG	1 cut(s)	446
Hsp92II	CATG	4 cut(s)	163, 280, 523, 532
Kpn2I	TCCGGA	1 cut(s)	325
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	134, 298, 322, 352
Lsp1109I	GCAGC	1 cut(s)	606
LweI	GCATC	1 cut(s)	21
MaeI	CTAG	2 cut(s)	410, 492
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	4 cut(s)	136, 300, 324, 354
MboI	GATC	4 cut(s)	134, 298, 322, 352
MboII	GAAGA	4 cut(s)	40, 62, 94, 445
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	4 cut(s)	56, 315, 421, 466
MnlI	CCTC	8 cut(s)	156, 366, 429, 492, 525, 538, 576, 581
MroI	TCCGGA	1 cut(s)	325
MslI	CAYNNNNRTG	1 cut(s)	188
MspI	CCGG	2 cut(s)	326, 378
MspR9I	CCNGG	1 cut(s)	264
MunI	CAATTG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	264
NdeII	GATC	4 cut(s)	134, 298, 322, 352
NlaIII	CATG	4 cut(s)	163, 280, 523, 532
NlaIV	GGNNCC	3 cut(s)	6, 227, 354
PceI	AGGCCT	1 cut(s)	444
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	596
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	3 cut(s)	6, 227, 354
PspOMI	GGGCCC	1 cut(s)	225
PspPI	GGNCC	3 cut(s)	225, 226, 328
PstNI	CAGNNNCTG	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	3 cut(s)	73, 194, 512
RsaNI	GTAC	3 cut(s)	72, 193, 511
RseI	CAYNNNNRTG	1 cut(s)	188
SatI	GCNGC	1 cut(s)	595
Sau3AI	GATC	4 cut(s)	134, 298, 322, 352
Sau96I	GGNCC	3 cut(s)	225, 226, 328
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	8 cut(s)	10, 83, 97, 125, 415, 493, 558, 592
SfaNI	GCATC	1 cut(s)	21
SfcI	CTRYAG	1 cut(s)	393
SinI	GGWCC	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	4 cut(s)	56, 315, 421, 466
SseBI	AGGCCT	1 cut(s)	444
SspMI	CTAG	2 cut(s)	410, 492
StuI	AGGCCT	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	220
TasI	AATT	4 cut(s)	56, 315, 421, 466
TfiI	GAWTC	1 cut(s)	20
TscAI	CASTG	2 cut(s)	47, 343
TseI	GCWGC	1 cut(s)	594
TspDTI	ATGAA	1 cut(s)	265
TspRI	CASTG	2 cut(s)	47, 343
VpaK11BI	GGWCC	1 cut(s)	328
XapI	RAATTY	2 cut(s)	56, 466
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XspI	CTAG	2 cut(s)	410, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.